Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:02:29 (554579): wrapper (7.7.26015): starting
09:02:29 (554579): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 09:02:29] Arguments: --nthreads 8
[2025-11-25 09:02:29] Threads: 8
[2025-11-25 09:02:29] Checking for CVMFS
[2025-11-25 09:02:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:02:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:02:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:02:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:02:29] 2.13.2.0 6969 35366 245528 153284 0 567 33110099 40960001 27958 16776704 0 99570861 99.622 88690518 36014 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 09:02:29] CVMFS is ok
[2025-11-25 09:02:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 09:02:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 09:02:29] Further information can be found at the LHC@home message board.
[2025-11-25 09:02:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:02:29] Checking for apptainer binary...
[2025-11-25 09:02:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:02:29] Running /usr/bin/apptainer --version
[2025-11-25 09:02:29] apptainer version 1.4.4-1.el9
[2025-11-25 09:02:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:02:30] c-212-14.aglt2.org
[2025-11-25 09:02:30] apptainer works
[2025-11-25 09:02:30] Set ATHENA_PROC_NUMBER=8
[2025-11-25 09:02:30] Set ATHENA_CORE_NUMBER=8
[2025-11-25 09:02:30] Starting ATLAS job with PandaID=6895882306
[2025-11-25 09:02:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:41:42]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:41:42] 2025-11-26 03:41:03,978 | INFO     | this job has now completed (state=finished)
[2025-11-25 22:41:42] 2025-11-26 03:41:03,978 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-25 22:41:42] 2025-11-26 03:41:03,978 | INFO     | log transfer has been attempted: DONE
[2025-11-25 22:41:42] 2025-11-26 03:41:03,978 | INFO     | job 6895882306 has finished - writing final server update
[2025-11-25 22:41:42] 2025-11-26 03:41:03,979 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 22:41:42] 2025-11-26 03:41:03,979 | INFO     | executing command: lscpu
[2025-11-25 22:41:42] 2025-11-26 03:41:04,045 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 22:41:42] 2025-11-26 03:41:05,069 | INFO     | time since job start (49086s) is within the limit (172800.0s)
[2025-11-25 22:41:42] 2025-11-26 03:41:05,300 | INFO     | monitor loop #3205: job 0:6895882306 is in state 'finished'
[2025-11-25 22:41:42] 2025-11-26 03:41:05,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:41:42] 2025-11-26 03:41:07,075 | INFO     | time since job start (49088s) is within the limit (172800.0s)
[2025-11-25 22:41:42] 2025-11-26 03:41:07,802 | INFO     | monitor loop #3206: job 0:6895882306 is in state 'finished'
[2025-11-25 22:41:42] 2025-11-26 03:41:07,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:41:42] 2025-11-26 03:41:09,080 | INFO     | time since job start (49090s) is within the limit (172800.0s)
[2025-11-25 22:41:42] 2025-11-26 03:41:10,011 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 22:41:42] 2025-11-26 03:41:10,018 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3124.826541666667
[2025-11-25 22:41:42] 2025-11-26 03:41:10,035 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895882306/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 22:41:42] 2025-11-26 03:41:10,037 | INFO     | extracted standard info from prmon json
[2025-11-25 22:41:42] 2025-11-26 03:41:10,038 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 22:41:42] 2025-11-26 03:41:10,038 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 22:41:42] 2025-11-26 03:41:10,052 | INFO     | fitting pss+swap vs Time
[2025-11-25 22:41:42] 2025-11-26 03:41:10,054 | INFO     | sum of square deviations: 161172040205.72586
[2025-11-25 22:41:42] 2025-11-26 03:41:10,069 | INFO     | sum of deviations: 1157451223646.7036
[2025-11-25 22:41:42] 2025-11-26 03:41:10,069 | INFO     | mean x: 1764103912.2064676
[2025-11-25 22:41:42] 2025-11-26 03:41:10,069 | INFO     | mean y: 2826157.1343283583
[2025-11-25 22:41:42] 2025-11-26 03:41:10,069 | INFO     | intersect: -12666022789.723967
[2025-11-25 22:41:42] 2025-11-26 03:41:10,070 | INFO     | chi2: 14.181098179730474
[2025-11-25 22:41:42] 2025-11-26 03:41:10,071 | INFO     | sum of square deviations: 158184477046.07513
[2025-11-25 22:41:42] 2025-11-26 03:41:10,084 | INFO     | sum of deviations: 1431487147133.7844
[2025-11-25 22:41:42] 2025-11-26 03:41:10,084 | INFO     | mean x: 1764103759.7171464
[2025-11-25 22:41:42] 2025-11-26 03:41:10,084 | INFO     | mean y: 2840147.906132666
[2025-11-25 22:41:42] 2025-11-26 03:41:10,085 | INFO     | intersect: -15961380269.941362
[2025-11-25 22:41:42] 2025-11-26 03:41:10,085 | INFO     | chi2: 10.747077282441673
[2025-11-25 22:41:42] 2025-11-26 03:41:10,085 | INFO     | current chi2=10.747077282441673 (change=24.215479321602643 %)
[2025-11-25 22:41:42] 2025-11-26 03:41:10,086 | INFO     | right removable region: 798
[2025-11-25 22:41:42] 2025-11-26 03:41:10,086 | INFO     | sum of square deviations: 158183640126.0751
[2025-11-25 22:41:42] 2025-11-26 03:41:10,103 | INFO     | sum of deviations: 875293005850.0615
[2025-11-25 22:41:42] 2025-11-26 03:41:10,104 | INFO     | mean x: 1764104064.7171464
[2025-11-25 22:41:42] 2025-11-26 03:41:10,104 | INFO     | mean y: 2840551.535669587
[2025-11-25 22:41:42] 2025-11-26 03:41:10,104 | INFO     | intersect: -9758648994.462273
[2025-11-25 22:41:42] 2025-11-26 03:41:10,105 | INFO     | chi2: 10.906443001401973
[2025-11-25 22:41:42] 2025-11-26 03:41:10,105 | INFO     | current chi2=10.906443001401973 (change=23.091689633804787 %)
[2025-11-25 22:41:42] 2025-11-26 03:41:10,105 | INFO     | left removable region: 10
[2025-11-25 22:41:42] 2025-11-26 03:41:10,106 | INFO     | sum of square deviations: 151740652282.18768
[2025-11-25 22:41:42] 2025-11-26 03:41:10,119 | INFO     | sum of deviations: 964316494269.3125
[2025-11-25 22:41:42] 2025-11-26 03:41:10,119 | INFO     | mean x: 1764104034.2411168
[2025-11-25 22:41:42] 2025-11-26 03:41:10,119 | INFO     | mean y: 2870184.5088832485
[2025-11-25 22:41:42] 2025-11-26 03:41:10,119 | INFO     | intersect: -11208065001.548952
[2025-11-25 22:41:42] 2025-11-26 03:41:10,120 | INFO     | chi2: 4.442892635905567
[2025-11-25 22:41:42] 2025-11-26 03:41:10,120 | INFO     | current memory leak: 6.36 B/s (using 788 data points, chi2=4.44)
[2025-11-25 22:41:42] 2025-11-26 03:41:10,121 | INFO     | could have reported an average CPU frequency of 3107 MHz (30 samples)
[2025-11-25 22:41:42] 2025-11-26 03:41:10,121 | INFO     | ..............................
[2025-11-25 22:41:42] 2025-11-26 03:41:10,121 | INFO     | . Timing measurements:
[2025-11-25 22:41:42] 2025-11-26 03:41:10,121 | INFO     | . get job = 0 s
[2025-11-25 22:41:42] 2025-11-26 03:41:10,121 | INFO     | . initial setup = 5 s
[2025-11-25 22:41:42] 2025-11-26 03:41:10,121 | INFO     | . payload setup = 13 s
[2025-11-25 22:41:42] 2025-11-26 03:41:10,122 | INFO     | . stage-in = 0 s
[2025-11-25 22:41:42] 2025-11-26 03:41:10,122 | INFO     | . payload execution = 49044 s
[2025-11-25 22:41:42] 2025-11-26 03:41:10,122 | INFO     | . stage-out = 3 s
[2025-11-25 22:41:42] 2025-11-26 03:41:10,122 | INFO     | . log creation = 0 s
[2025-11-25 22:41:42] 2025-11-26 03:41:10,122 | INFO     | ..............................
[2025-11-25 22:41:42] 2025-11-26 03:41:10,202 | INFO     | 
[2025-11-25 22:41:42] 2025-11-26 03:41:10,202 | INFO     | job summary report
[2025-11-25 22:41:42] 2025-11-26 03:41:10,202 | INFO     | --------------------------------------------------
[2025-11-25 22:41:42] 2025-11-26 03:41:10,202 | INFO     | PanDA job id: 6895882306
[2025-11-25 22:41:42] 2025-11-26 03:41:10,202 | INFO     | task id: 47556149
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | errors: (none)
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | pilot state: finished 
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | transexitcode: 0
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | exeerrorcode: 0
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | exeerrordiag: 
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | exitcode: 0
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | exitmsg: OK
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | cpuconsumptiontime: 200046 s
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | nevents: 1000
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | neventsw: 0
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | pid: 565025
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | pgrp: 565025
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | corecount: 8
[2025-11-25 22:41:42] 2025-11-26 03:41:10,203 | INFO     | event service: False
[2025-11-25 22:41:42] 2025-11-26 03:41:10,204 | INFO     | sizes: {0: 2284143, 1: 2284342, 9: 2284604, 12: 2284632, 49060: 2333131, 49064: 2342153, 49067: 2342337, 49073: 2342583}
[2025-11-25 22:41:42] 2025-11-26 03:41:10,204 | INFO     | --------------------------------------------------
[2025-11-25 22:41:42] 2025-11-26 03:41:10,204 | INFO     | 
[2025-11-25 22:41:42] 2025-11-26 03:41:10,204 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 22:41:42] 2025-11-26 03:41:10,259 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,259 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,259 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,259 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,259 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,259 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,259 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,259 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,260 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 22:41:42] 2025-11-26 03:41:10,261 | INFO     | job 6895882306 has completed (purged errors)
[2025-11-25 22:41:42] 2025-11-26 03:41:10,261 | INFO     | overall cleanup function is called
[2025-11-25 22:41:42] 2025-11-26 03:41:11,279 | INFO     | --- collectZombieJob: --- 10, [565025]
[2025-11-25 22:41:42] 2025-11-26 03:41:11,279 | INFO     | zombie collector waiting for pid 565025
[2025-11-25 22:41:42] 2025-11-26 03:41:11,279 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 22:41:42] 2025-11-26 03:41:11,279 | INFO     | collected zombie processes
[2025-11-25 22:41:42] 2025-11-26 03:41:11,279 | INFO     | will attempt to kill all subprocesses of pid=565025
[2025-11-25 22:41:42] 2025-11-26 03:41:11,685 | INFO     | process IDs to be killed: [565025] (in reverse order)
[2025-11-25 22:41:42] 2025-11-26 03:41:11,816 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 22:41:42] 2025-11-26 03:41:11,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 22:41:42] 2025-11-26 03:41:11,839 | INFO     | did not find any defunct processes belonging to 565025
[2025-11-25 22:41:42] 2025-11-26 03:41:11,856 | INFO     | did not find any defunct processes belonging to 565025
[2025-11-25 22:41:42] 2025-11-26 03:41:11,868 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:41:42] 2025-11-26 03:41:11,868 | INFO     | ready for new job
[2025-11-25 22:41:42] 2025-11-26 03:41:11,868 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:41:42] 2025-11-26 03:41:11,871 | INFO     | ***************************************
[2025-11-25 22:41:42] 2025-11-26 03:41:11,875 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:41:42] 2025-11-26 03:41:11,875 | INFO     | ***************************************
[2025-11-25 22:41:42] 2025-11-26 03:41:11,876 | INFO     | 
[2025-11-25 22:41:42] 2025-11-26 03:41:11,884 | INFO     | architecture information:
[2025-11-25 22:41:42] 2025-11-26 03:41:11,889 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:41:42] 2025-11-26 03:41:11,928 | INFO     | cat /etc/os-release:
[2025-11-25 22:41:42] NAME="CentOS Linux"
[2025-11-25 22:41:42] VERSION="7 (Core)"
[2025-11-25 22:41:42] ID="centos"
[2025-11-25 22:41:42] ID_LIKE="rhel fedora"
[2025-11-25 22:41:42] VERSION_ID="7"
[2025-11-25 22:41:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:41:42] ANSI_COLOR="0;31"
[2025-11-25 22:41:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:41:42] HOME_URL="https://www.centos.org/"
[2025-11-25 22:41:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:41:42] 
[2025-11-25 22:41:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:41:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:41:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:41:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:41:42] 
[2025-11-25 22:41:42] 2025-11-26 03:41:11,932 | INFO     | ***************************************
[2025-11-25 22:41:42] 2025-11-26 03:41:12,440 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 22:41:42] 2025-11-26 03:41:12,461 | INFO     | sufficient remaining disk space (120891375616 B)
[2025-11-25 22:41:42] 2025-11-26 03:41:12,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:41:42] 2025-11-26 03:41:12,461 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:41:42] 2025-11-26 03:41:12,461 | INFO     | update_server=False
[2025-11-25 22:41:42] 2025-11-26 03:41:12,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:41:42] 2025-11-26 03:41:12,467 | INFO     | all job control threads have been joined
[2025-11-25 22:41:42] 2025-11-26 03:41:12,647 | INFO     | all payload control threads have been joined
[2025-11-25 22:41:42] 2025-11-26 03:41:12,817 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 22:41:42] 2025-11-26 03:41:12,818 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 22:41:42] 2025-11-26 03:41:12,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:41:42] 2025-11-26 03:41:12,818 | INFO     | will abort loop
[2025-11-25 22:41:42] 2025-11-26 03:41:12,828 | INFO     | all data control threads have been joined
[2025-11-25 22:41:42] 2025-11-26 03:41:13,468 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:13,474 | INFO     | [job] control thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:13,478 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:13,541 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:13,652 | INFO     | [payload] control thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:13,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:41:42] 2025-11-26 03:41:13,816 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:13,822 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:13,833 | INFO     | [data] control thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:14,041 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:14,165 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:14,221 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:14,464 | INFO     | [job] validate thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:14,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:41:42] 2025-11-26 03:41:15,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:41:42] 2025-11-26 03:41:15,805 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:16,218 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:18,496 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:23,003 | INFO     | job.realtimelogging is not enabled
[2025-11-25 22:41:42] 2025-11-26 03:41:24,009 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:41:42] 2025-11-26 03:41:24,010 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:41:42] 2025-11-26 03:41:25,230 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140412593174336)>', '<ExcThread(monitor, started 140411792250624)>']
[2025-11-25 22:41:42] 2025-11-26 03:41:30,256 | INFO     | all workflow threads have been joined
[2025-11-25 22:41:42] 2025-11-26 03:41:30,258 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:41:42] 2025-11-26 03:41:30,258 | INFO     | traces error code: 0
[2025-11-25 22:41:42] 2025-11-26 03:41:30,258 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:41:42] 2025-11-26 03:41:42,561 | INFO     | PID=558261 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 22:41:42] 2025-11-26 03:41:42,561 | INFO     | .. there are 24 such processes running
[2025-11-25 22:41:42] 2025-11-26 03:41:42,561 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:41:42] 2025-11-26 03:41:42,561 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:41:42] 2025-11-26 03:41:42,561 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:41:42] 2025-11-26 03:41:42,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:41:42] 2025-11-26 03:41:42,561 | INFO     | [monitor] control thread has ended
[2025-11-25 22:41:42] 2025-11-26 03:41:42,674 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:41:42] 2025-11-26 03:41:42,677 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:41:42] 2025-11-26 03:41:42,680 [wrapper] pilotpid: 558261
[2025-11-25 22:41:42] 2025-11-26 03:41:42,682 [wrapper] Pilot exit status: 0
[2025-11-25 22:41:42] 2025-11-26 03:41:42,693 [wrapper] pandaids: 6895882306
[2025-11-25 22:41:42] 2025-11-26 03:41:42,788 [wrapper] cleanup supervisor_pilot 3048769 558262
[2025-11-25 22:41:42] 2025-11-26 03:41:42,791 [wrapper] Test setup, not cleaning
[2025-11-25 22:41:42] 2025-11-26 03:41:42,793 [wrapper] apfmon messages muted
[2025-11-25 22:41:42] 2025-11-26 03:41:42,796 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:41:42] 2025-11-26 03:41:42,799 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:41:42]  *** Error codes and diagnostics ***
[2025-11-25 22:41:42]     "exeErrorCode": 0,
[2025-11-25 22:41:42]     "exeErrorDiag": "",
[2025-11-25 22:41:42]     "pilotErrorCode": 0,
[2025-11-25 22:41:42]     "pilotErrorDiag": "",
[2025-11-25 22:41:42]  *** Listing of results directory ***
[2025-11-25 22:41:42] total 1289176
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:27 queuedata.json
[2025-11-25 22:41:42] -rwx------. 1 boincer umatlas     36292 Nov 24 11:29 runpilot2-wrapper.sh
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas       100 Nov 25 09:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:41:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 09:02 run_atlas
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas       105 Nov 25 09:02 job.xml
[2025-11-25 22:41:42] -rw-r--r--. 2 boincer umatlas 409697351 Nov 25 09:02 EVNT.47483658._001384.pool.root.1
[2025-11-25 22:41:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 09:02 start_atlas.sh
[2025-11-25 22:41:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 09:02 shared
[2025-11-25 22:41:42] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 09:02 input.tar.gz
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas         0 Nov 25 09:02 boinc_lockfile
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 09:02 pandaJob.out
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas        57 Nov 25 09:02 setup.sh.local
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas    991909 Nov 25 09:02 agis_schedconf.cvmfs.json
[2025-11-25 22:41:42] drwx------. 5 boincer umatlas      4096 Nov 25 09:02 pilot3
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas       532 Nov 25 22:19 boinc_task_state.xml
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas      6949 Nov 25 22:38 init_data.xml
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas 889350648 Nov 25 22:40 HITS.47556149._003702.pool.root.1
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas        95 Nov 25 22:40 pilot_heartbeat.json
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas      1064 Nov 25 22:40 memory_monitor_summary.json
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas   1516240 Nov 25 22:40 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas   2018055 Nov 25 22:41 log.47556149._003702.job.log.tgz.1
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas      8609 Nov 25 22:41 heartbeat.json
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas        29 Nov 25 22:41 wrapper_checkpoint.txt
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 22:41 boinc_mmap_file
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas       822 Nov 25 22:41 pilotlog.txt
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas   6558251 Nov 25 22:41 log.47556149._003702.job.log.1
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas       353 Nov 25 22:41 output.list
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas       620 Nov 25 22:41 runtime_log
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas   8591360 Nov 25 22:41 result.tar.gz
[2025-11-25 22:41:42] -rw-------. 1 boincer umatlas       665 Nov 25 22:41 t31LDmBcoh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNlLKDmtrefOn.diag
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 22:41 runtime_log.err
[2025-11-25 22:41:42] -rw-r--r--. 1 boincer umatlas     21697 Nov 25 22:41 stderr.txt
[2025-11-25 22:41:43] HITS file was successfully produced:
[2025-11-25 22:41:43] -rw-------. 1 boincer umatlas 889350648 Nov 25 22:40 shared/HITS.pool.root.1
[2025-11-25 22:41:43]  *** Contents of shared directory: ***
[2025-11-25 22:41:43] total 1277600
[2025-11-25 22:41:43] -rw-r--r--. 2 boincer umatlas 409697351 Nov 25 09:02 ATLAS.root_0
[2025-11-25 22:41:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 09:02 start_atlas.sh
[2025-11-25 22:41:43] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 09:02 input.tar.gz
[2025-11-25 22:41:43] -rw-------. 1 boincer umatlas 889350648 Nov 25 22:40 HITS.pool.root.1
[2025-11-25 22:41:43] -rw-------. 1 boincer umatlas   8591360 Nov 25 22:41 result.tar.gz
22:41:44 (554579): run_atlas exited; CPU time 200016.307519
22:41:44 (554579): called boinc_finish(0)

</stderr_txt>
]]>

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