Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:31:13 (26600): wrapper (7.7.26015): starting
01:31:13 (26600): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 01:31:13] Arguments: --nthreads 8
[2025-11-28 01:31:13] Threads: 8
[2025-11-28 01:31:13] Checking for CVMFS
[2025-11-28 01:31:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 01:31:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 01:31:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 01:31:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 01:31:17] 2.11.2.0 20077 287537 140876 153391 3 84 21131726 25165824 1294 130560 10 137256689 99.874 77274405 2612 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 01:31:17] CVMFS is ok
[2025-11-28 01:31:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 01:31:17] Checking for apptainer binary...
[2025-11-28 01:31:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 01:31:17] Running /usr/bin/apptainer --version
[2025-11-28 01:31:17] apptainer version 1.3.2-1.el7
[2025-11-28 01:31:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 01:31:29] cg-vwn315.simple-grid.lan
[2025-11-28 01:31:29] apptainer works
[2025-11-28 01:31:29] Set ATHENA_PROC_NUMBER=8
[2025-11-28 01:31:29] Set ATHENA_CORE_NUMBER=8
[2025-11-28 01:31:29] Starting ATLAS job with PandaID=6895816669
[2025-11-28 01:31:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 01:09:09]  *** The last 200 lines of the pilot log: ***
[2025-11-29 01:09:09] 2025-11-29 00:08:22,550 | INFO     | time since job start (84781s) is within the limit (172800.0s)
[2025-11-29 01:09:09] 2025-11-29 00:08:22,764 | INFO     | monitor loop #5736: job 0:6895816669 is in state 'finished'
[2025-11-29 01:09:09] 2025-11-29 00:08:22,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 01:09:09] 2025-11-29 00:08:24,557 | INFO     | time since job start (84783s) is within the limit (172800.0s)
[2025-11-29 01:09:09] 2025-11-29 00:08:25,276 | INFO     | monitor loop #5737: job 0:6895816669 is in state 'finished'
[2025-11-29 01:09:09] 2025-11-29 00:08:25,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 01:09:09] 2025-11-29 00:08:26,566 | INFO     | time since job start (84785s) is within the limit (172800.0s)
[2025-11-29 01:09:09] 2025-11-29 00:08:27,794 | INFO     | monitor loop #5738: job 0:6895816669 is in state 'finished'
[2025-11-29 01:09:09] 2025-11-29 00:08:27,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 01:09:09] 2025-11-29 00:08:28,573 | INFO     | time since job start (84787s) is within the limit (172800.0s)
[2025-11-29 01:09:09] 2025-11-29 00:08:29,811 | INFO     | PID=30353 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 01:09:09] 2025-11-29 00:08:29,812 | INFO     | .. there are 9 such processes running
[2025-11-29 01:09:09] 2025-11-29 00:08:30,303 | INFO     | monitor loop #5739: job 0:6895816669 is in state 'finished'
[2025-11-29 01:09:09] 2025-11-29 00:08:30,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 01:09:09] 2025-11-29 00:08:30,817 | INFO     | time since job start (84789s) is within the limit (172800.0s)
[2025-11-29 01:09:09] 2025-11-29 00:08:32,275 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 01:09:09] 2025-11-29 00:08:32,276 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-29 01:09:09] 2025-11-29 00:08:32,277 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6895816669/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 01:09:09] 2025-11-29 00:08:32,278 | INFO     | extracted standard info from prmon json
[2025-11-29 01:09:09] 2025-11-29 00:08:32,278 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 01:09:09] 2025-11-29 00:08:32,278 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 01:09:09] 2025-11-29 00:08:32,308 | INFO     | fitting pss+swap vs Time
[2025-11-29 01:09:09] 2025-11-29 00:08:32,310 | INFO     | sum of square deviations: 814920337157.1316
[2025-11-29 01:09:09] 2025-11-29 00:08:32,382 | INFO     | sum of deviations: 2861693717569.1743
[2025-11-29 01:09:09] 2025-11-29 00:08:32,388 | INFO     | mean x: 1764332721.6072464
[2025-11-29 01:09:09] 2025-11-29 00:08:32,388 | INFO     | mean y: 2850158.961594203
[2025-11-29 01:09:09] 2025-11-29 00:08:32,388 | INFO     | intersect: -6192822761.337171
[2025-11-29 01:09:09] 2025-11-29 00:08:32,390 | INFO     | chi2: 20.811716574315856
[2025-11-29 01:09:09] 2025-11-29 00:08:32,392 | INFO     | sum of square deviations: 806095019105.9744
[2025-11-29 01:09:09] 2025-11-29 00:08:32,454 | INFO     | sum of deviations: 3321975086673.4097
[2025-11-29 01:09:09] 2025-11-29 00:08:32,454 | INFO     | mean x: 1764332569.1112728
[2025-11-29 01:09:09] 2025-11-29 00:08:32,454 | INFO     | mean y: 2858111.664
[2025-11-29 01:09:09] 2025-11-29 00:08:32,454 | INFO     | intersect: -7268082286.521996
[2025-11-29 01:09:09] 2025-11-29 00:08:32,456 | INFO     | chi2: 17.546694912090402
[2025-11-29 01:09:09] 2025-11-29 00:08:32,456 | INFO     | current chi2=17.546694912090402 (change=15.68838231371496 %)
[2025-11-29 01:09:09] 2025-11-29 00:08:32,456 | INFO     | right removable region: 1374
[2025-11-29 01:09:09] 2025-11-29 00:08:32,458 | INFO     | sum of square deviations: 806094087025.9739
[2025-11-29 01:09:09] 2025-11-29 00:08:32,514 | INFO     | sum of deviations: 2272671033334.236
[2025-11-29 01:09:09] 2025-11-29 00:08:32,515 | INFO     | mean x: 1764332874.1112728
[2025-11-29 01:09:09] 2025-11-29 00:08:32,515 | INFO     | mean y: 2860335.9461818184
[2025-11-29 01:09:09] 2025-11-29 00:08:32,515 | INFO     | intersect: -4971432715.806257
[2025-11-29 01:09:09] 2025-11-29 00:08:32,517 | INFO     | chi2: 16.027357659696815
[2025-11-29 01:09:09] 2025-11-29 00:08:32,517 | INFO     | current chi2=16.027357659696815 (change=22.988776046102373 %)
[2025-11-29 01:09:09] 2025-11-29 00:08:32,517 | INFO     | left removable region: 10
[2025-11-29 01:09:09] 2025-11-29 00:08:32,519 | INFO     | sum of square deviations: 786902248285.2809
[2025-11-29 01:09:09] 2025-11-29 00:08:32,574 | INFO     | sum of deviations: 2387375806827.7485
[2025-11-29 01:09:09] 2025-11-29 00:08:32,574 | INFO     | mean x: 1764332843.6202345
[2025-11-29 01:09:09] 2025-11-29 00:08:32,574 | INFO     | mean y: 2877902.096041056
[2025-11-29 01:09:09] 2025-11-29 00:08:32,574 | INFO     | intersect: -5349915987.143812
[2025-11-29 01:09:09] 2025-11-29 00:08:32,576 | INFO     | chi2: 9.30674155157275
[2025-11-29 01:09:09] 2025-11-29 00:08:32,576 | INFO     | current memory leak: 3.03 B/s (using 1364 data points, chi2=9.31)
[2025-11-29 01:09:09] 2025-11-29 00:08:32,578 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-29 01:09:09] 2025-11-29 00:08:32,578 | INFO     | ..............................
[2025-11-29 01:09:09] 2025-11-29 00:08:32,579 | INFO     | . Timing measurements:
[2025-11-29 01:09:09] 2025-11-29 00:08:32,579 | INFO     | . get job = 0 s
[2025-11-29 01:09:09] 2025-11-29 00:08:32,579 | INFO     | . initial setup = 11 s
[2025-11-29 01:09:09] 2025-11-29 00:08:32,579 | INFO     | . payload setup = 182 s
[2025-11-29 01:09:09] 2025-11-29 00:08:32,579 | INFO     | . stage-in = 0 s
[2025-11-29 01:09:09] 2025-11-29 00:08:32,579 | INFO     | . payload execution = 84314 s
[2025-11-29 01:09:09] 2025-11-29 00:08:32,579 | INFO     | . stage-out = 4 s
[2025-11-29 01:09:09] 2025-11-29 00:08:32,579 | INFO     | . log creation = 1 s
[2025-11-29 01:09:09] 2025-11-29 00:08:32,579 | INFO     | ..............................
[2025-11-29 01:09:09] 2025-11-29 00:08:32,823 | INFO     | time since job start (84791s) is within the limit (172800.0s)
[2025-11-29 01:09:09] 2025-11-29 00:08:32,915 | INFO     | 
[2025-11-29 01:09:09] 2025-11-29 00:08:32,915 | INFO     | job summary report
[2025-11-29 01:09:09] 2025-11-29 00:08:32,915 | INFO     | --------------------------------------------------
[2025-11-29 01:09:09] 2025-11-29 00:08:32,915 | INFO     | PanDA job id: 6895816669
[2025-11-29 01:09:09] 2025-11-29 00:08:32,915 | INFO     | task id: 47556149
[2025-11-29 01:09:09] 2025-11-29 00:08:32,915 | INFO     | errors: (none)
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | pilot state: finished 
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | transexitcode: 0
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | exeerrorcode: 0
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | exeerrordiag: 
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | exitcode: 0
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | exitmsg: OK
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | cpuconsumptiontime: 319272 s
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | nevents: 1000
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | neventsw: 0
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | pid: 4570
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | pgrp: 4570
[2025-11-29 01:09:09] 2025-11-29 00:08:32,916 | INFO     | corecount: 8
[2025-11-29 01:09:09] 2025-11-29 00:08:32,917 | INFO     | event service: False
[2025-11-29 01:09:09] 2025-11-29 00:08:32,917 | INFO     | sizes: {0: 2283487, 1: 2284173, 2: 2284372, 13: 2284372, 23: 2284428, 34: 2284456, 45: 2284612, 56: 2284640, 66: 2284668, 77: 2284696, 88: 2284752, 92: 2285322, 99
[2025-11-29 01:09:09] 2025-11-29 00:08:32,917 | INFO     | --------------------------------------------------
[2025-11-29 01:09:09] 2025-11-29 00:08:32,917 | INFO     | 
[2025-11-29 01:09:09] 2025-11-29 00:08:32,917 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-11-29 01:09:09] 2025-11-29 00:08:33,484 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,486 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 01:09:09] 2025-11-29 00:08:33,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 01:09:09] 2025-11-29 00:08:33,486 | INFO     | job 6895816669 has completed (purged errors)
[2025-11-29 01:09:09] 2025-11-29 00:08:33,486 | INFO     | overall cleanup function is called
[2025-11-29 01:09:09] 2025-11-29 00:08:34,506 | INFO     | --- collectZombieJob: --- 10, [4570]
[2025-11-29 01:09:09] 2025-11-29 00:08:34,506 | INFO     | zombie collector waiting for pid 4570
[2025-11-29 01:09:09] 2025-11-29 00:08:34,507 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 01:09:09] 2025-11-29 00:08:34,507 | INFO     | collected zombie processes
[2025-11-29 01:09:09] 2025-11-29 00:08:34,507 | INFO     | will attempt to kill all subprocesses of pid=4570
[2025-11-29 01:09:09] 2025-11-29 00:08:34,632 | INFO     | process IDs to be killed: [4570] (in reverse order)
[2025-11-29 01:09:09] 2025-11-29 00:08:35,666 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 01:09:09] 2025-11-29 00:08:35,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 01:09:09] 2025-11-29 00:08:35,669 | INFO     | did not find any defunct processes belonging to 4570
[2025-11-29 01:09:09] 2025-11-29 00:08:35,671 | INFO     | did not find any defunct processes belonging to 4570
[2025-11-29 01:09:09] 2025-11-29 00:08:35,679 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 01:09:09] 2025-11-29 00:08:35,679 | INFO     | ready for new job
[2025-11-29 01:09:09] 2025-11-29 00:08:35,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 01:09:09] 2025-11-29 00:08:35,684 | INFO     | ***************************************
[2025-11-29 01:09:09] 2025-11-29 00:08:35,685 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 01:09:09] 2025-11-29 00:08:35,685 | INFO     | ***************************************
[2025-11-29 01:09:09] 2025-11-29 00:08:35,685 | INFO     | 
[2025-11-29 01:09:09] 2025-11-29 00:08:35,685 | INFO     | pilot is running in a VM
[2025-11-29 01:09:09] 2025-11-29 00:08:35,685 | INFO     | architecture information:
[2025-11-29 01:09:09] 2025-11-29 00:08:35,694 | INFO     | executing command: cat /etc/os-release
[2025-11-29 01:09:09] 2025-11-29 00:08:35,940 | INFO     | cat /etc/os-release:
[2025-11-29 01:09:09] NAME="CentOS Linux"
[2025-11-29 01:09:09] VERSION="7 (Core)"
[2025-11-29 01:09:09] ID="centos"
[2025-11-29 01:09:09] ID_LIKE="rhel fedora"
[2025-11-29 01:09:09] VERSION_ID="7"
[2025-11-29 01:09:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 01:09:09] ANSI_COLOR="0;31"
[2025-11-29 01:09:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 01:09:09] HOME_URL="https://www.centos.org/"
[2025-11-29 01:09:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 01:09:09] 
[2025-11-29 01:09:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 01:09:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 01:09:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 01:09:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 01:09:09] 
[2025-11-29 01:09:09] 2025-11-29 00:08:35,941 | INFO     | ***************************************
[2025-11-29 01:09:09] 2025-11-29 00:08:36,444 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-11-29 01:09:09] 2025-11-29 00:08:36,669 | INFO     | sufficient remaining disk space (495559114752 B)
[2025-11-29 01:09:09] 2025-11-29 00:08:36,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 01:09:09] 2025-11-29 00:08:36,669 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 01:09:09] 2025-11-29 00:08:36,669 | INFO     | update_server=False
[2025-11-29 01:09:09] 2025-11-29 00:08:36,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 01:09:09] 2025-11-29 00:08:36,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 01:09:09] 2025-11-29 00:08:36,670 | INFO     | aborting loop
[2025-11-29 01:09:09] 2025-11-29 00:08:36,717 | INFO     | all job control threads have been joined
[2025-11-29 01:09:09] 2025-11-29 00:08:36,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 01:09:09] 2025-11-29 00:08:36,984 | INFO     | all data control threads have been joined
[2025-11-29 01:09:09] 2025-11-29 00:08:37,433 | INFO     | all payload control threads have been joined
[2025-11-29 01:09:09] 2025-11-29 00:08:37,675 | INFO     | [job] retrieve thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:37,676 | INFO     | [job] job monitor thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:37,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 01:09:09] 2025-11-29 00:08:37,723 | INFO     | [job] control thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:37,891 | INFO     | [job] validate thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:37,949 | INFO     | [data] copytool_in thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:37,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 01:09:09] 2025-11-29 00:08:37,990 | INFO     | [data] control thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:38,439 | INFO     | [payload] control thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:38,459 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:38,545 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:38,630 | INFO     | [payload] validate_post thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:38,717 | INFO     | [job] queue monitor thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:39,026 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:39,027 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:39,178 | INFO     | [payload] failed_post thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:39,977 | INFO     | [data] copytool_out thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:40,955 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 01:09:09] 2025-11-29 00:08:48,255 | INFO     | [monitor] cgroup control has ended
[2025-11-29 01:09:09] 2025-11-29 00:08:49,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809488688960)>', '<ExcThread(monitor, started 139809188189952)>']
[2025-11-29 01:09:09] 2025-11-29 00:08:54,074 | INFO     | all workflow threads have been joined
[2025-11-29 01:09:09] 2025-11-29 00:08:54,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 01:09:09] 2025-11-29 00:08:54,075 | INFO     | traces error code: 0
[2025-11-29 01:09:09] 2025-11-29 00:08:54,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 01:09:09] 2025-11-29 00:09:05,966 | INFO     | PID=30353 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 01:09:09] 2025-11-29 00:09:05,966 | INFO     | .. there are 9 such processes running
[2025-11-29 01:09:09] 2025-11-29 00:09:05,966 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 01:09:09] 2025-11-29 00:09:05,966 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 01:09:09] 2025-11-29 00:09:05,967 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 01:09:09] 2025-11-29 00:09:05,967 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 01:09:09] 2025-11-29 00:09:05,967 | INFO     | [monitor] control thread has ended
[2025-11-29 01:09:09] 2025-11-29 00:09:06,260 [wrapper] ==== pilot stdout END ====
[2025-11-29 01:09:09] 2025-11-29 00:09:06,287 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 01:09:09] 2025-11-29 00:09:06,371 [wrapper] pilotpid: 30353
[2025-11-29 01:09:09] 2025-11-29 00:09:06,451 [wrapper] Pilot exit status: 0
[2025-11-29 01:09:09] 2025-11-29 00:09:06,902 [wrapper] pandaids: 6895816669
[2025-11-29 01:09:09] 2025-11-29 00:09:07,480 [wrapper] cleanup supervisor_pilot  4439 30354
[2025-11-29 01:09:09] 2025-11-29 00:09:07,547 [wrapper] Test setup, not cleaning
[2025-11-29 01:09:09] 2025-11-29 00:09:07,603 [wrapper] apfmon messages muted
[2025-11-29 01:09:09] 2025-11-29 00:09:07,678 [wrapper] ==== wrapper stdout END ====
[2025-11-29 01:09:09] 2025-11-29 00:09:07,758 [wrapper] ==== wrapper stderr END ====
[2025-11-29 01:09:09]  *** Error codes and diagnostics ***
[2025-11-29 01:09:09]     "exeErrorCode": 0,
[2025-11-29 01:09:09]     "exeErrorDiag": "",
[2025-11-29 01:09:09]     "pilotErrorCode": 0,
[2025-11-29 01:09:09]     "pilotErrorDiag": "",
[2025-11-29 01:09:09]  *** Listing of results directory ***
[2025-11-29 01:09:09] total 1335788
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc    576529 Nov 24 16:13 pilot3.tar.gz
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc      5112 Nov 24 17:01 queuedata.json
[2025-11-29 01:09:09] -rwx------. 1 boinc boinc     36292 Nov 24 17:03 runpilot2-wrapper.sh
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc       100 Nov 28 01:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 01:09:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 01:31 run_atlas
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc       105 Nov 28 01:31 job.xml
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc      6391 Nov 28 01:31 init_data.xml
[2025-11-29 01:09:09] -rw-r--r--. 2 boinc boinc 409619235 Nov 28 01:31 EVNT.47483658._001375.pool.root.1
[2025-11-29 01:09:09] -rw-r--r--. 2 boinc boinc     15847 Nov 28 01:31 start_atlas.sh
[2025-11-29 01:09:09] drwxrwx--x. 2 boinc boinc        68 Nov 28 01:31 shared
[2025-11-29 01:09:09] -rw-r--r--. 2 boinc boinc    590108 Nov 28 01:31 input.tar.gz
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc         0 Nov 28 01:31 boinc_lockfile
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc      2786 Nov 28 01:31 pandaJob.out
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc    991826 Nov 28 01:35 agis_schedconf.cvmfs.json
[2025-11-29 01:09:09] drwx------. 5 boinc boinc      4096 Nov 28 01:35 pilot3
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc       533 Nov 29 00:44 boinc_task_state.xml
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc 926800519 Nov 29 01:05 HITS.47556149._003615.pool.root.1
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc      1031 Nov 29 01:06 memory_monitor_summary.json
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc   1516240 Nov 29 01:06 agis_ddmendpoints.agis.ALL.json
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc   2462614 Nov 29 01:06 log.47556149._003615.job.log.tgz.1
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc        95 Nov 29 01:08 pilot_heartbeat.json
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc      8626 Nov 29 01:08 heartbeat.json
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc        29 Nov 29 01:08 wrapper_checkpoint.txt
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc      8192 Nov 29 01:08 boinc_mmap_file
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc       820 Nov 29 01:09 pilotlog.txt
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc  11297794 Nov 29 01:09 log.47556149._003615.job.log.1
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc       353 Nov 29 01:09 output.list
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc       620 Nov 29 01:09 runtime_log
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc  13783040 Nov 29 01:09 result.tar.gz
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc      8833 Nov 29 01:09 runtime_log.err
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc       662 Nov 29 01:09 ReKODmGDoh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmm6IKDmurPqKo.diag
[2025-11-29 01:09:09] -rw-r--r--. 1 boinc boinc     21495 Nov 29 01:09 stderr.txt
[2025-11-29 01:09:09] HITS file was successfully produced:
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc 926800519 Nov 29 01:05 shared/HITS.pool.root.1
[2025-11-29 01:09:09]  *** Contents of shared directory: ***
[2025-11-29 01:09:09] total 1319156
[2025-11-29 01:09:09] -rw-r--r--. 2 boinc boinc 409619235 Nov 28 01:31 ATLAS.root_0
[2025-11-29 01:09:09] -rw-r--r--. 2 boinc boinc     15847 Nov 28 01:31 start_atlas.sh
[2025-11-29 01:09:09] -rw-r--r--. 2 boinc boinc    590108 Nov 28 01:31 input.tar.gz
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc 926800519 Nov 29 01:05 HITS.pool.root.1
[2025-11-29 01:09:09] -rw-------. 1 boinc boinc  13783040 Nov 29 01:09 result.tar.gz
01:09:11 (26600): run_atlas exited; CPU time 319826.715550
01:09:11 (26600): called boinc_finish(0)

</stderr_txt>
]]>

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