Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:41:02 (869177): wrapper (7.7.26015): starting
14:41:02 (869177): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 14:41:02] Arguments: --nthreads 3
[2025-11-25 14:41:02] Threads: 3
[2025-11-25 14:41:02] Checking for CVMFS
[2025-11-25 14:41:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:41:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:41:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:41:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:41:03] 2.9.2.0 411005 99 60612 153284 0 88 35199190 36864000 0 130560 0 1377277 100.000 3960 6910 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 14:41:03] CVMFS is ok
[2025-11-25 14:41:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 14:41:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 14:41:03] Further information can be found at the LHC@home message board.
[2025-11-25 14:41:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:41:03] Checking for apptainer binary...
[2025-11-25 14:41:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:41:03] Running /usr/bin/apptainer --version
[2025-11-25 14:41:03] apptainer version 1.4.1-1.1
[2025-11-25 14:41:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:41:03] thA335
[2025-11-25 14:41:03] apptainer works
[2025-11-25 14:41:03] Set ATHENA_PROC_NUMBER=3
[2025-11-25 14:41:03] Set ATHENA_CORE_NUMBER=3
[2025-11-25 14:41:03] Starting ATLAS job with PandaID=6895816617
[2025-11-25 14:41:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:45:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:45:20] 2025-11-25 13:44:31,991 | INFO     | update_server=False
[2025-11-25 14:45:20] 2025-11-25 13:44:31,991 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:45:20] 2025-11-25 13:44:31,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:45:20] 2025-11-25 13:44:31,992 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:45:20] 2025-11-25 13:44:31,992 | INFO     | aborting loop
[2025-11-25 14:45:20] 2025-11-25 13:44:32,731 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:45:20] 2025-11-25 13:44:32,830 | INFO     | all job control threads have been joined
[2025-11-25 14:45:20] 2025-11-25 13:44:32,975 | INFO     | all data control threads have been joined
[2025-11-25 14:45:20] 2025-11-25 13:44:32,995 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:32,997 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:32,997 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:33,026 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:33,390 | INFO     | all payload control threads have been joined
[2025-11-25 14:45:20] 2025-11-25 13:44:33,463 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:33,836 | INFO     | [job] control thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:33,876 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:33,981 | INFO     | [data] control thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:34,131 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:34,282 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:34,296 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:34,391 | INFO     | [job] validate thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:34,395 | INFO     | [payload] control thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:34,492 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:34,736 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:44:35,037 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:45:20] 2025-11-25 13:44:39,044 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:45:20] 2025-11-25 13:45:02,141 | INFO     | PID=872902 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 14:45:20] 2025-11-25 13:45:02,141 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:45:20] 2025-11-25 13:45:02,141 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:45:20] 2025-11-25 13:45:02,141 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:45:20] 2025-11-25 13:45:13,131 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:45:20] 2025-11-25 13:45:14,898 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665499240256)>', '<ExcThread(monitor, started 140664876562176)>']
[2025-11-25 14:45:20] 2025-11-25 13:45:15,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:45:20] 2025-11-25 13:45:15,212 | INFO     | [monitor] control thread has ended
[2025-11-25 14:45:20] 2025-11-25 13:45:19,924 | INFO     | all workflow threads have been joined
[2025-11-25 14:45:20] 2025-11-25 13:45:19,924 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:45:20] 2025-11-25 13:45:19,925 | INFO     | traces error code: 0
[2025-11-25 14:45:20] 2025-11-25 13:45:19,925 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:45:20] 2025-11-25 13:45:19,972 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:45:20] 2025-11-25 13:45:19,975 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:45:20] 2025-11-25 13:45:19,978 [wrapper] pilotpid: 872902
[2025-11-25 14:45:20] 2025-11-25 13:45:19,982 [wrapper] Pilot exit status: 0
[2025-11-25 14:45:20] 2025-11-25 13:45:19,988 [wrapper] pandaids: 6895816617
[2025-11-25 14:45:20] 2025-11-25 13:45:20,005 [wrapper] cleanup supervisor_pilot  872908 872903
[2025-11-25 14:45:20] 2025-11-25 13:45:20,008 [wrapper] Test setup, not cleaning
[2025-11-25 14:45:20] 2025-11-25 13:45:20,011 [wrapper] apfmon messages muted
[2025-11-25 14:45:20] 2025-11-25 13:45:20,014 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:45:20] 2025-11-25 13:45:20,016 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:45:20]  *** Error codes and diagnostics ***
[2025-11-25 14:45:20]     "exeErrorCode": 65,
[2025-11-25 14:45:20]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 14:45:20]     "pilotErrorCode": 1305,
[2025-11-25 14:45:20]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 14:45:20]  *** Listing of results directory ***
[2025-11-25 14:45:20] total 405960
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc    576529 Nov 24 16:13 pilot3.tar.gz
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc      5112 Nov 24 16:57 queuedata.json
[2025-11-25 14:45:20] -rwx------ 1 boinc boinc     36292 Nov 24 16:58 runpilot2-wrapper.sh
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc       100 Nov 25 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:45:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 14:41 run_atlas
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc       105 Nov 25 14:41 job.xml
[2025-11-25 14:45:20] -rw-r--r-- 2 boinc boinc 411502085 Nov 25 14:41 EVNT.47483658._002051.pool.root.1
[2025-11-25 14:45:20] -rw-r--r-- 2 boinc boinc    590101 Nov 25 14:41 input.tar.gz
[2025-11-25 14:45:20] -rw-r--r-- 2 boinc boinc     15847 Nov 25 14:41 start_atlas.sh
[2025-11-25 14:45:20] drwxrwx--x 2 boinc boinc      4096 Nov 25 14:41 shared
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc         0 Nov 25 14:41 boinc_setup_complete
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc      6196 Nov 25 14:41 init_data.xml
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc         0 Nov 25 14:41 boinc_lockfile
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc      2785 Nov 25 14:41 pandaJob.out
[2025-11-25 14:45:20] -rw------- 1 boinc boinc    991909 Nov 25 14:41 agis_schedconf.cvmfs.json
[2025-11-25 14:45:20] -rw------- 1 boinc boinc   1516240 Nov 25 14:41 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:45:20] drwx------ 5 boinc boinc      4096 Nov 25 14:41 pilot3
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc       522 Nov 25 14:42 boinc_task_state.xml
[2025-11-25 14:45:20] -rw------- 1 boinc boinc       961 Nov 25 14:42 memory_monitor_summary.json
[2025-11-25 14:45:20] -rw------- 1 boinc boinc     55853 Nov 25 14:42 log.47556161._000350.job.log.tgz.1
[2025-11-25 14:45:20] -rw------- 1 boinc boinc        95 Nov 25 14:44 pilot_heartbeat.json
[2025-11-25 14:45:20] -rw------- 1 boinc boinc      8403 Nov 25 14:44 heartbeat.json
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc      8192 Nov 25 14:45 boinc_mmap_file
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc        22 Nov 25 14:45 wrapper_checkpoint.txt
[2025-11-25 14:45:20] -rw------- 1 boinc boinc      4751 Nov 25 14:45 pilotlog.txt
[2025-11-25 14:45:20] -rw------- 1 boinc boinc     93827 Nov 25 14:45 log.47556161._000350.job.log.1
[2025-11-25 14:45:20] -rw------- 1 boinc boinc       186 Nov 25 14:45 output.list
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc       620 Nov 25 14:45 runtime_log
[2025-11-25 14:45:20] -rw------- 1 boinc boinc    174080 Nov 25 14:45 result.tar.gz
[2025-11-25 14:45:20] -rw------- 1 boinc boinc       649 Nov 25 14:45 so5KDmC8nh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFkLKDmYyhtqn.diag
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc      8744 Nov 25 14:45 runtime_log.err
[2025-11-25 14:45:20] -rw-r--r-- 1 boinc boinc      7783 Nov 25 14:45 stderr.txt
[2025-11-25 14:45:20] No HITS result produced
[2025-11-25 14:45:20]  *** Contents of shared directory: ***
[2025-11-25 14:45:20] total 402632
[2025-11-25 14:45:20] -rw-r--r-- 2 boinc boinc 411502085 Nov 25 14:41 ATLAS.root_0
[2025-11-25 14:45:20] -rw-r--r-- 2 boinc boinc    590101 Nov 25 14:41 input.tar.gz
[2025-11-25 14:45:20] -rw-r--r-- 2 boinc boinc     15847 Nov 25 14:41 start_atlas.sh
[2025-11-25 14:45:20] -rw------- 1 boinc boinc    174080 Nov 25 14:45 result.tar.gz
14:45:21 (869177): run_atlas exited; CPU time 31.745416
14:45:21 (869177): called boinc_finish(0)

</stderr_txt>
]]>

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