Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:43:30 (6305): wrapper (7.7.26015): starting
15:43:30 (6305): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 15:43:30] Arguments: --nthreads 8
[2025-11-27 15:43:30] Threads: 8
[2025-11-27 15:43:30] Checking for CVMFS
[2025-11-27 15:43:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 15:43:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 15:43:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 15:43:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 15:43:34] 2.11.2.0 13500 286895 143148 153368 1 85 17758907 25165824 1338 130560 14 132226238 99.867 83910612 2890 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 15:43:34] CVMFS is ok
[2025-11-27 15:43:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 15:43:34] Checking for apptainer binary...
[2025-11-27 15:43:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 15:43:34] Running /usr/bin/apptainer --version
[2025-11-27 15:43:34] apptainer version 1.3.2-1.el7
[2025-11-27 15:43:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 15:43:55] cg-vwn363.simple-grid.lan
[2025-11-27 15:43:55] apptainer works
[2025-11-27 15:43:55] Set ATHENA_PROC_NUMBER=8
[2025-11-27 15:43:55] Set ATHENA_CORE_NUMBER=8
[2025-11-27 15:43:55] Starting ATLAS job with PandaID=6895816611
[2025-11-27 15:43:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 15:43:33]  *** The last 200 lines of the pilot log: ***
[2025-11-28 15:43:33] 2025-11-28 14:42:11,473 | INFO     | time since job start (86059s) is within the limit (172800.0s)
[2025-11-28 15:43:33] 2025-11-28 14:42:12,993 | INFO     | monitor loop #5794: job 0:6895816611 is in state 'finished'
[2025-11-28 15:43:33] 2025-11-28 14:42:12,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 15:43:33] 2025-11-28 14:42:13,479 | INFO     | time since job start (86061s) is within the limit (172800.0s)
[2025-11-28 15:43:33] 2025-11-28 14:42:15,485 | INFO     | time since job start (86063s) is within the limit (172800.0s)
[2025-11-28 15:43:33] 2025-11-28 14:42:15,499 | INFO     | monitor loop #5795: job 0:6895816611 is in state 'finished'
[2025-11-28 15:43:33] 2025-11-28 14:42:15,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 15:43:33] 2025-11-28 14:42:17,494 | INFO     | time since job start (86065s) is within the limit (172800.0s)
[2025-11-28 15:43:33] 2025-11-28 14:42:18,004 | INFO     | monitor loop #5796: job 0:6895816611 is in state 'finished'
[2025-11-28 15:43:33] 2025-11-28 14:42:18,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 15:43:33] 2025-11-28 14:42:19,505 | INFO     | time since job start (86067s) is within the limit (172800.0s)
[2025-11-28 15:43:33] 2025-11-28 14:42:20,509 | INFO     | monitor loop #5797: job 0:6895816611 is in state 'finished'
[2025-11-28 15:43:33] 2025-11-28 14:42:20,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 15:43:33] 2025-11-28 14:42:20,697 | INFO     | PID=10131 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 15:43:33] 2025-11-28 14:42:20,697 | INFO     | .. there are 9 such processes running
[2025-11-28 15:43:33] 2025-11-28 14:42:21,698 | INFO     | time since job start (86069s) is within the limit (172800.0s)
[2025-11-28 15:43:33] 2025-11-28 14:42:22,297 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 15:43:33] 2025-11-28 14:42:22,298 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 15:43:33] 2025-11-28 14:42:22,300 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895816611/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 15:43:33] 2025-11-28 14:42:22,301 | INFO     | extracted standard info from prmon json
[2025-11-28 15:43:33] 2025-11-28 14:42:22,301 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 15:43:33] 2025-11-28 14:42:22,301 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 15:43:33] 2025-11-28 14:42:22,336 | INFO     | fitting pss+swap vs Time
[2025-11-28 15:43:33] 2025-11-28 14:42:22,338 | INFO     | sum of square deviations: 854519458962.7852
[2025-11-28 15:43:33] 2025-11-28 14:42:22,395 | INFO     | sum of deviations: 3995417986883.3794
[2025-11-28 15:43:33] 2025-11-28 14:42:22,395 | INFO     | mean x: 1764298111.5741796
[2025-11-28 15:43:33] 2025-11-28 14:42:22,395 | INFO     | mean y: 2850567.457917261
[2025-11-28 15:43:33] 2025-11-28 14:42:22,395 | INFO     | intersect: -8246357025.502057
[2025-11-28 15:43:33] 2025-11-28 14:42:22,397 | INFO     | chi2: 19.381458287228174
[2025-11-28 15:43:33] 2025-11-28 14:42:22,399 | INFO     | sum of square deviations: 845409970734.4951
[2025-11-28 15:43:33] 2025-11-28 14:42:22,458 | INFO     | sum of deviations: 4454005102860.778
[2025-11-28 15:43:33] 2025-11-28 14:42:22,458 | INFO     | mean x: 1764297959.0780244
[2025-11-28 15:43:33] 2025-11-28 14:42:22,458 | INFO     | mean y: 2858243.396564066
[2025-11-28 15:43:33] 2025-11-28 14:42:22,459 | INFO     | intersect: -9292267653.773956
[2025-11-28 15:43:33] 2025-11-28 14:42:22,460 | INFO     | chi2: 16.323625172686064
[2025-11-28 15:43:33] 2025-11-28 14:42:22,461 | INFO     | current chi2=16.323625172686064 (change=15.77710546454151 %)
[2025-11-28 15:43:33] 2025-11-28 14:42:22,461 | INFO     | right removable region: 1396
[2025-11-28 15:43:33] 2025-11-28 14:42:22,463 | INFO     | sum of square deviations: 845409052074.4954
[2025-11-28 15:43:33] 2025-11-28 14:42:22,557 | INFO     | sum of deviations: 3403026945483.601
[2025-11-28 15:43:33] 2025-11-28 14:42:22,557 | INFO     | mean x: 1764298264.0780244
[2025-11-28 15:43:33] 2025-11-28 14:42:22,558 | INFO     | mean y: 2860483.2605583393
[2025-11-28 15:43:33] 2025-11-28 14:42:22,558 | INFO     | intersect: -7098973259.582315
[2025-11-28 15:43:33] 2025-11-28 14:42:22,568 | INFO     | chi2: 14.583739950023038
[2025-11-28 15:43:33] 2025-11-28 14:42:22,568 | INFO     | current chi2=14.583739950023038 (change=24.754165894558593 %)
[2025-11-28 15:43:33] 2025-11-28 14:42:22,568 | INFO     | left removable region: 10
[2025-11-28 15:43:33] 2025-11-28 14:42:22,570 | INFO     | sum of square deviations: 825595654292.1099
[2025-11-28 15:43:33] 2025-11-28 14:42:22,663 | INFO     | sum of deviations: 3454381809462.006
[2025-11-28 15:43:33] 2025-11-28 14:42:22,664 | INFO     | mean x: 1764298233.58658
[2025-11-28 15:43:33] 2025-11-28 14:42:22,664 | INFO     | mean y: 2878841.6666666665
[2025-11-28 15:43:33] 2025-11-28 14:42:22,664 | INFO     | intersect: -7379136425.592809
[2025-11-28 15:43:33] 2025-11-28 14:42:22,666 | INFO     | chi2: 7.1139997006926965
[2025-11-28 15:43:33] 2025-11-28 14:42:22,666 | INFO     | current memory leak: 4.18 B/s (using 1386 data points, chi2=7.11)
[2025-11-28 15:43:33] 2025-11-28 14:42:22,667 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 15:43:33] 2025-11-28 14:42:22,668 | INFO     | ..............................
[2025-11-28 15:43:33] 2025-11-28 14:42:22,668 | INFO     | . Timing measurements:
[2025-11-28 15:43:33] 2025-11-28 14:42:22,668 | INFO     | . get job = 0 s
[2025-11-28 15:43:33] 2025-11-28 14:42:22,668 | INFO     | . initial setup = 8 s
[2025-11-28 15:43:33] 2025-11-28 14:42:22,668 | INFO     | . payload setup = 164 s
[2025-11-28 15:43:33] 2025-11-28 14:42:22,668 | INFO     | . stage-in = 0 s
[2025-11-28 15:43:33] 2025-11-28 14:42:22,668 | INFO     | . payload execution = 85624 s
[2025-11-28 15:43:33] 2025-11-28 14:42:22,668 | INFO     | . stage-out = 5 s
[2025-11-28 15:43:33] 2025-11-28 14:42:22,668 | INFO     | . log creation = 1 s
[2025-11-28 15:43:33] 2025-11-28 14:42:22,669 | INFO     | ..............................
[2025-11-28 15:43:33] 2025-11-28 14:42:22,799 | INFO     | 
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | job summary report
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | --------------------------------------------------
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | PanDA job id: 6895816611
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | task id: 47556161
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | errors: (none)
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | pilot state: finished 
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | transexitcode: 0
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | exeerrorcode: 0
[2025-11-28 15:43:33] 2025-11-28 14:42:22,800 | INFO     | exeerrordiag: 
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | exitcode: 0
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | exitmsg: OK
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | cpuconsumptiontime: 323264 s
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | nevents: 1000
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | neventsw: 0
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | pid: 16735
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | pgrp: 16735
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | corecount: 8
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | event service: False
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | sizes: {0: 2284035, 1: 2284119, 2: 2284290, 12: 2284318, 23: 2284346, 34: 2284374, 44: 2284530, 55: 2284558, 66: 2284586, 77: 2284614, 88: 2285212, 98: 2285240, 85
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | --------------------------------------------------
[2025-11-28 15:43:33] 2025-11-28 14:42:22,801 | INFO     | 
[2025-11-28 15:43:33] 2025-11-28 14:42:22,802 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-28 15:43:33] 2025-11-28 14:42:23,130 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,130 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,130 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,130 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,130 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,130 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,130 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,130 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,131 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 15:43:33] 2025-11-28 14:42:23,132 | INFO     | job 6895816611 has completed (purged errors)
[2025-11-28 15:43:33] 2025-11-28 14:42:23,132 | INFO     | overall cleanup function is called
[2025-11-28 15:43:33] 2025-11-28 14:42:24,147 | INFO     | --- collectZombieJob: --- 10, [16735]
[2025-11-28 15:43:33] 2025-11-28 14:42:24,147 | INFO     | zombie collector waiting for pid 16735
[2025-11-28 15:43:33] 2025-11-28 14:42:24,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 15:43:33] 2025-11-28 14:42:24,147 | INFO     | collected zombie processes
[2025-11-28 15:43:33] 2025-11-28 14:42:24,147 | INFO     | will attempt to kill all subprocesses of pid=16735
[2025-11-28 15:43:33] 2025-11-28 14:42:24,248 | INFO     | process IDs to be killed: [16735] (in reverse order)
[2025-11-28 15:43:33] 2025-11-28 14:42:24,787 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 15:43:33] 2025-11-28 14:42:24,787 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 15:43:33] 2025-11-28 14:42:24,790 | INFO     | did not find any defunct processes belonging to 16735
[2025-11-28 15:43:33] 2025-11-28 14:42:24,792 | INFO     | did not find any defunct processes belonging to 16735
[2025-11-28 15:43:33] 2025-11-28 14:42:24,836 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 15:43:33] 2025-11-28 14:42:24,836 | INFO     | ready for new job
[2025-11-28 15:43:33] 2025-11-28 14:42:24,837 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 15:43:33] 2025-11-28 14:42:24,842 | INFO     | ***************************************
[2025-11-28 15:43:33] 2025-11-28 14:42:24,842 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 15:43:33] 2025-11-28 14:42:24,842 | INFO     | ***************************************
[2025-11-28 15:43:33] 2025-11-28 14:42:24,842 | INFO     | 
[2025-11-28 15:43:33] 2025-11-28 14:42:24,842 | INFO     | pilot is running in a VM
[2025-11-28 15:43:33] 2025-11-28 14:42:24,843 | INFO     | architecture information:
[2025-11-28 15:43:33] 2025-11-28 14:42:24,844 | INFO     | executing command: cat /etc/os-release
[2025-11-28 15:43:33] 2025-11-28 14:42:25,065 | INFO     | cat /etc/os-release:
[2025-11-28 15:43:33] NAME="CentOS Linux"
[2025-11-28 15:43:33] VERSION="7 (Core)"
[2025-11-28 15:43:33] ID="centos"
[2025-11-28 15:43:33] ID_LIKE="rhel fedora"
[2025-11-28 15:43:33] VERSION_ID="7"
[2025-11-28 15:43:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 15:43:33] ANSI_COLOR="0;31"
[2025-11-28 15:43:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 15:43:33] HOME_URL="https://www.centos.org/"
[2025-11-28 15:43:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 15:43:33] 
[2025-11-28 15:43:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 15:43:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 15:43:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 15:43:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 15:43:33] 
[2025-11-28 15:43:33] 2025-11-28 14:42:25,066 | INFO     | ***************************************
[2025-11-28 15:43:33] 2025-11-28 14:42:25,569 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-28 15:43:33] 2025-11-28 14:42:25,765 | INFO     | sufficient remaining disk space (495108227072 B)
[2025-11-28 15:43:33] 2025-11-28 14:42:25,765 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 15:43:33] 2025-11-28 14:42:25,765 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 15:43:33] 2025-11-28 14:42:25,765 | INFO     | update_server=False
[2025-11-28 15:43:33] 2025-11-28 14:42:25,765 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 15:43:33] 2025-11-28 14:42:25,967 | INFO     | all data control threads have been joined
[2025-11-28 15:43:33] 2025-11-28 14:42:26,017 | INFO     | all payload control threads have been joined
[2025-11-28 15:43:33] 2025-11-28 14:42:26,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 15:43:33] 2025-11-28 14:42:26,553 | INFO     | aborting loop
[2025-11-28 15:43:33] 2025-11-28 14:42:26,771 | INFO     | [job] retrieve thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:26,950 | INFO     | [job] validate thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:26,952 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:26,973 | INFO     | [data] control thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:27,023 | INFO     | [payload] control thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:27,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 15:43:33] 2025-11-28 14:42:27,160 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:27,189 | INFO     | all job control threads have been joined
[2025-11-28 15:43:33] 2025-11-28 14:42:27,213 | INFO     | [payload] failed_post thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:27,267 | INFO     | [data] copytool_in thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:27,430 | INFO     | [payload] validate_post thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:27,438 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:27,559 | INFO     | [job] job monitor thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:27,758 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:27,821 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 15:43:33] 2025-11-28 14:42:28,195 | INFO     | [job] control thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:28,827 | INFO     | [job] queue monitor thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:29,141 | INFO     | [data] copytool_out thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:29,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 15:43:33] 2025-11-28 14:42:33,241 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 15:43:33] 2025-11-28 14:42:54,952 | INFO     | PID=10131 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 15:43:33] 2025-11-28 14:42:54,952 | INFO     | .. there are 9 such processes running
[2025-11-28 15:43:33] 2025-11-28 14:42:54,953 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 15:43:33] 2025-11-28 14:42:54,953 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 15:43:33] 2025-11-28 14:42:54,953 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 15:43:33] 2025-11-28 14:43:22,274 | INFO     | [monitor] cgroup control has ended
[2025-11-28 15:43:33] 2025-11-28 14:43:22,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140012746250048)>', '<ExcThread(monitor, started 140012033140480)>']
[2025-11-28 15:43:33] 2025-11-28 14:43:23,119 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 15:43:33] 2025-11-28 14:43:23,119 | INFO     | [monitor] control thread has ended
[2025-11-28 15:43:33] 2025-11-28 14:43:27,910 | INFO     | all workflow threads have been joined
[2025-11-28 15:43:33] 2025-11-28 14:43:27,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 15:43:33] 2025-11-28 14:43:27,910 | INFO     | traces error code: 0
[2025-11-28 15:43:33] 2025-11-28 14:43:27,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 15:43:33] 2025-11-28 14:43:28,239 [wrapper] ==== pilot stdout END ====
[2025-11-28 15:43:33] 2025-11-28 14:43:28,342 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 15:43:33] 2025-11-28 14:43:28,395 [wrapper] pilotpid: 10131
[2025-11-28 15:43:33] 2025-11-28 14:43:28,487 [wrapper] Pilot exit status: 0
[2025-11-28 15:43:33] 2025-11-28 14:43:28,794 [wrapper] pandaids: 6895816611
[2025-11-28 15:43:33] 2025-11-28 14:43:29,540 [wrapper] cleanup supervisor_pilot 13255 10132
[2025-11-28 15:43:33] 2025-11-28 14:43:29,623 [wrapper] Test setup, not cleaning
[2025-11-28 15:43:33] 2025-11-28 14:43:29,713 [wrapper] apfmon messages muted
[2025-11-28 15:43:33] 2025-11-28 14:43:29,794 [wrapper] ==== wrapper stdout END ====
[2025-11-28 15:43:33] 2025-11-28 14:43:29,900 [wrapper] ==== wrapper stderr END ====
[2025-11-28 15:43:33]  *** Error codes and diagnostics ***
[2025-11-28 15:43:33]     "exeErrorCode": 0,
[2025-11-28 15:43:33]     "exeErrorDiag": "",
[2025-11-28 15:43:33]     "pilotErrorCode": 0,
[2025-11-28 15:43:33]     "pilotErrorDiag": "",
[2025-11-28 15:43:33]  *** Listing of results directory ***
[2025-11-28 15:43:33] total 1349528
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc    576529 Nov 24 16:13 pilot3.tar.gz
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc      5112 Nov 24 16:57 queuedata.json
[2025-11-28 15:43:33] -rwx------. 1 boinc boinc     36292 Nov 24 17:00 runpilot2-wrapper.sh
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc       100 Nov 27 15:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 15:43:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 15:43 run_atlas
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc       105 Nov 27 15:43 job.xml
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc      6392 Nov 27 15:43 init_data.xml
[2025-11-28 15:43:33] -rw-r--r--. 2 boinc boinc 411502085 Nov 27 15:43 EVNT.47483658._002051.pool.root.1
[2025-11-28 15:43:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 15:43 start_atlas.sh
[2025-11-28 15:43:33] drwxrwx--x. 2 boinc boinc        68 Nov 27 15:43 shared
[2025-11-28 15:43:33] -rw-r--r--. 2 boinc boinc    590100 Nov 27 15:43 input.tar.gz
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc         0 Nov 27 15:43 boinc_lockfile
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc      2784 Nov 27 15:43 pandaJob.out
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc    991580 Nov 27 15:47 agis_schedconf.cvmfs.json
[2025-11-28 15:43:33] drwx------. 5 boinc boinc      4096 Nov 27 15:47 pilot3
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc       533 Nov 28 15:24 boinc_task_state.xml
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc 938551495 Nov 28 15:39 HITS.47556161._000344.pool.root.1
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc      1032 Nov 28 15:40 memory_monitor_summary.json
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc   1516240 Nov 28 15:40 agis_ddmendpoints.agis.ALL.json
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc   2491369 Nov 28 15:40 log.47556161._000344.job.log.tgz.1
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc      8623 Nov 28 15:42 heartbeat.json
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc        95 Nov 28 15:42 pilot_heartbeat.json
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc      8192 Nov 28 15:42 boinc_mmap_file
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc        29 Nov 28 15:42 wrapper_checkpoint.txt
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc      4884 Nov 28 15:43 pilotlog.txt
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc  11484741 Nov 28 15:43 log.47556161._000344.job.log.1
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc       353 Nov 28 15:43 output.list
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc       620 Nov 28 15:43 runtime_log
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc  13998080 Nov 28 15:43 result.tar.gz
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc       662 Nov 28 15:43 UKRMDm89nh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLkLKDmLtmd4n.diag
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc      8817 Nov 28 15:43 runtime_log.err
[2025-11-28 15:43:33] -rw-r--r--. 1 boinc boinc     21501 Nov 28 15:43 stderr.txt
[2025-11-28 15:43:33] HITS file was successfully produced:
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc 938551495 Nov 28 15:39 shared/HITS.pool.root.1
[2025-11-28 15:43:33]  *** Contents of shared directory: ***
[2025-11-28 15:43:33] total 1332684
[2025-11-28 15:43:33] -rw-r--r--. 2 boinc boinc 411502085 Nov 27 15:43 ATLAS.root_0
[2025-11-28 15:43:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 15:43 start_atlas.sh
[2025-11-28 15:43:33] -rw-r--r--. 2 boinc boinc    590100 Nov 27 15:43 input.tar.gz
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc 938551495 Nov 28 15:39 HITS.pool.root.1
[2025-11-28 15:43:33] -rw-------. 1 boinc boinc  13998080 Nov 28 15:43 result.tar.gz
15:43:34 (6305): run_atlas exited; CPU time 323836.993498
15:43:34 (6305): called boinc_finish(0)

</stderr_txt>
]]>

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