Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
07:14:35 (1611819): wrapper (7.7.26015): starting
07:14:35 (1611819): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 07:14:35] Arguments: --nthreads 4
[2025-11-26 07:14:35] Threads: 4
[2025-11-26 07:14:35] Checking for CVMFS
[2025-11-26 07:14:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:14:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:14:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:14:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:14:36] 2.13.3.0 381040 1388 47388 153320 0 90 3153846 4096000 5926 130560 0 3780403 99.863 345663 5155 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-26 07:14:36] CVMFS is ok
[2025-11-26 07:14:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:14:36] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-26 07:14:36] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-26 07:14:36] Further information can be found at the LHC@home message board.
[2025-11-26 07:14:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:14:36] Checking for apptainer binary...
[2025-11-26 07:14:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:14:36] Running /usr/bin/apptainer --version
[2025-11-26 07:14:36] apptainer version 1.4.4
[2025-11-26 07:14:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:14:36] X-32-ubuntu
[2025-11-26 07:14:36] apptainer works
[2025-11-26 07:14:36] Set ATHENA_PROC_NUMBER=4
[2025-11-26 07:14:36] Set ATHENA_CORE_NUMBER=4
[2025-11-26 07:14:36] Starting ATLAS job with PandaID=6895356335
[2025-11-26 07:14:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:41:59]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:41:59] 2025-11-26 23:40:58,525 | INFO     | time since job start (41174s) is within the limit (172800.0s)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,318 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 18:41:59] 2025-11-26 23:40:59,322 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.5695312499993
[2025-11-26 18:41:59] 2025-11-26 23:40:59,326 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895356335/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,327 | INFO     | extracted standard info from prmon json
[2025-11-26 18:41:59] 2025-11-26 23:40:59,327 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:41:59] 2025-11-26 23:40:59,327 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:41:59] 2025-11-26 23:40:59,334 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:41:59] 2025-11-26 23:40:59,335 | INFO     | sum of square deviations: 95364950850.0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,342 | INFO     | sum of deviations: 380257645229.00006
[2025-11-26 18:41:59] 2025-11-26 23:40:59,343 | INFO     | mean x: 1764179864.0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,343 | INFO     | mean y: 2257908.296296296
[2025-11-26 18:41:59] 2025-11-26 23:40:59,343 | INFO     | intersect: -7032222525.717975
[2025-11-26 18:41:59] 2025-11-26 23:40:59,343 | INFO     | chi2: 2.608725389319418
[2025-11-26 18:41:59] 2025-11-26 23:40:59,344 | INFO     | sum of square deviations: 93261385827.5
[2025-11-26 18:41:59] 2025-11-26 23:40:59,351 | INFO     | sum of deviations: 462924446167.00073
[2025-11-26 18:41:59] 2025-11-26 23:40:59,351 | INFO     | mean x: 1764179711.5
[2025-11-26 18:41:59] 2025-11-26 23:40:59,352 | INFO     | mean y: 2263883.704477612
[2025-11-26 18:41:59] 2025-11-26 23:40:59,352 | INFO     | intersect: -8754649909.060347
[2025-11-26 18:41:59] 2025-11-26 23:40:59,352 | INFO     | chi2: 1.5468067245074508
[2025-11-26 18:41:59] 2025-11-26 23:40:59,352 | INFO     | current chi2=1.5468067245074508 (change=40.706418128931844 %)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,353 | INFO     | sum of square deviations: 91188984180.0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,360 | INFO     | sum of deviations: 456590480422.99994
[2025-11-26 18:41:59] 2025-11-26 23:40:59,361 | INFO     | mean x: 1764179559.0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,361 | INFO     | mean y: 2263417.6887218044
[2025-11-26 18:41:59] 2025-11-26 23:40:59,361 | INFO     | intersect: -8831123637.114262
[2025-11-26 18:41:59] 2025-11-26 23:40:59,361 | INFO     | chi2: 1.546033208214399
[2025-11-26 18:41:59] 2025-11-26 23:40:59,361 | INFO     | current chi2=1.546033208214399 (change=0.05000730089908871 %)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,361 | INFO     | right removable region: 664
[2025-11-26 18:41:59] 2025-11-26 23:40:59,362 | INFO     | sum of square deviations: 93261385827.5
[2025-11-26 18:41:59] 2025-11-26 23:40:59,370 | INFO     | sum of deviations: 279512274108.0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,370 | INFO     | mean x: 1764180016.5
[2025-11-26 18:41:59] 2025-11-26 23:40:59,370 | INFO     | mean y: 2265188.158208955
[2025-11-26 18:41:59] 2025-11-26 23:40:59,370 | INFO     | intersect: -5285131776.539269
[2025-11-26 18:41:59] 2025-11-26 23:40:59,371 | INFO     | chi2: 1.1000146472416241
[2025-11-26 18:41:59] 2025-11-26 23:40:59,371 | INFO     | current chi2=1.1000146472416241 (change=57.83325252457472 %)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,371 | INFO     | sum of square deviations: 91188984180.0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,379 | INFO     | sum of deviations: 269952490382.00006
[2025-11-26 18:41:59] 2025-11-26 23:40:59,379 | INFO     | mean x: 1764180169.0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,379 | INFO     | mean y: 2265892.320300752
[2025-11-26 18:41:59] 2025-11-26 23:40:59,379 | INFO     | intersect: -5220347720.3504715
[2025-11-26 18:41:59] 2025-11-26 23:40:59,380 | INFO     | chi2: 1.0988479663798305
[2025-11-26 18:41:59] 2025-11-26 23:40:59,380 | INFO     | current chi2=1.0988479663798305 (change=0.1060604842598377 %)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,380 | INFO     | left removable region: 20
[2025-11-26 18:41:59] 2025-11-26 23:40:59,380 | INFO     | sum of square deviations: 82819952845.0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,387 | INFO     | sum of deviations: 322130566651.4998
[2025-11-26 18:41:59] 2025-11-26 23:40:59,387 | INFO     | mean x: 1764180138.5
[2025-11-26 18:41:59] 2025-11-26 23:40:59,387 | INFO     | mean y: 2273358.4270186336
[2025-11-26 18:41:59] 2025-11-26 23:40:59,387 | INFO     | intersect: -6859555562.846457
[2025-11-26 18:41:59] 2025-11-26 23:40:59,388 | INFO     | chi2: 0.02708103566630872
[2025-11-26 18:41:59] 2025-11-26 23:40:59,388 | INFO     | current memory leak: 3.89 B/s (using 644 data points, chi2=0.03)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | could have reported an average CPU frequency of 3907 MHz (26 samples)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | ..............................
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | . Timing measurements:
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | . get job = 0 s
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | . initial setup = 2 s
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | . payload setup = 4 s
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | . stage-in = 0 s
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | . payload execution = 41143 s
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | . stage-out = 2 s
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | . log creation = 0 s
[2025-11-26 18:41:59] 2025-11-26 23:40:59,389 | INFO     | ..............................
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | 
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | job summary report
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | --------------------------------------------------
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | PanDA job id: 6895356335
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | task id: 47556149
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | errors: (none)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | pilot state: finished 
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | transexitcode: 0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | exeerrorcode: 0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | exeerrordiag: 
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | exitcode: 0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,457 | INFO     | exitmsg: OK
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | cpuconsumptiontime: 160485 s
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | nevents: 1000
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | neventsw: 0
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | pid: 1622371
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | pgrp: 1622371
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | corecount: 4
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | event service: False
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | sizes: {0: 2284213, 3: 2284475, 11: 2284503, 41151: 2328307, 41155: 2337301, 41157: 2337357, 41161: 2337731}
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | --------------------------------------------------
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | 
[2025-11-26 18:41:59] 2025-11-26 23:40:59,458 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 18:41:59] 2025-11-26 23:40:59,474 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,476 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,476 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,476 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:41:59] 2025-11-26 23:40:59,476 | INFO     | job 6895356335 has completed (purged errors)
[2025-11-26 18:41:59] 2025-11-26 23:40:59,476 | INFO     | overall cleanup function is called
[2025-11-26 18:41:59] 2025-11-26 23:40:59,724 | INFO     | PID=1615679 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 18:41:59] 2025-11-26 23:40:59,724 | INFO     | .. there are 8 such processes running
[2025-11-26 18:41:59] 2025-11-26 23:41:00,487 | INFO     | --- collectZombieJob: --- 10, [1622371]
[2025-11-26 18:41:59] 2025-11-26 23:41:00,488 | INFO     | zombie collector waiting for pid 1622371
[2025-11-26 18:41:59] 2025-11-26 23:41:00,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:41:59] 2025-11-26 23:41:00,488 | INFO     | collected zombie processes
[2025-11-26 18:41:59] 2025-11-26 23:41:00,488 | INFO     | will attempt to kill all subprocesses of pid=1622371
[2025-11-26 18:41:59] 2025-11-26 23:41:00,654 | INFO     | process IDs to be killed: [1622371] (in reverse order)
[2025-11-26 18:41:59] 2025-11-26 23:41:00,715 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:41:59] 2025-11-26 23:41:00,715 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:41:59] 2025-11-26 23:41:00,721 | INFO     | did not find any defunct processes belonging to 1622371
[2025-11-26 18:41:59] 2025-11-26 23:41:00,726 | INFO     | did not find any defunct processes belonging to 1622371
[2025-11-26 18:41:59] 2025-11-26 23:41:00,727 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:41:59] 2025-11-26 23:41:00,727 | INFO     | ready for new job
[2025-11-26 18:41:59] 2025-11-26 23:41:00,728 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:41:59] 2025-11-26 23:41:00,731 | INFO     | ***************************************
[2025-11-26 18:41:59] 2025-11-26 23:41:00,731 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:41:59] 2025-11-26 23:41:00,731 | INFO     | ***************************************
[2025-11-26 18:41:59] 2025-11-26 23:41:00,731 | INFO     | 
[2025-11-26 18:41:59] 2025-11-26 23:41:00,732 | INFO     | architecture information:
[2025-11-26 18:41:59] 2025-11-26 23:41:00,733 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:41:59] 2025-11-26 23:41:00,745 | INFO     | cat /etc/os-release:
[2025-11-26 18:41:59] NAME="CentOS Linux"
[2025-11-26 18:41:59] VERSION="7 (Core)"
[2025-11-26 18:41:59] ID="centos"
[2025-11-26 18:41:59] ID_LIKE="rhel fedora"
[2025-11-26 18:41:59] VERSION_ID="7"
[2025-11-26 18:41:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:41:59] ANSI_COLOR="0;31"
[2025-11-26 18:41:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:41:59] HOME_URL="https://www.centos.org/"
[2025-11-26 18:41:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:41:59] 
[2025-11-26 18:41:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:41:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:41:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:41:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:41:59] 
[2025-11-26 18:41:59] 2025-11-26 23:41:00,745 | INFO     | ***************************************
[2025-11-26 18:41:59] 2025-11-26 23:41:01,248 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 18:41:59] 2025-11-26 23:41:01,261 | INFO     | sufficient remaining disk space (1782793109504 B)
[2025-11-26 18:41:59] 2025-11-26 23:41:01,261 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:41:59] 2025-11-26 23:41:01,261 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:41:59] 2025-11-26 23:41:01,262 | INFO     | update_server=False
[2025-11-26 18:41:59] 2025-11-26 23:41:01,262 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:41:59] 2025-11-26 23:41:01,262 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:41:59] 2025-11-26 23:41:01,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:41:59] 2025-11-26 23:41:01,262 | INFO     | aborting loop
[2025-11-26 18:41:59] 2025-11-26 23:41:01,268 | INFO     | all job control threads have been joined
[2025-11-26 18:41:59] 2025-11-26 23:41:01,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:41:59] 2025-11-26 23:41:01,588 | INFO     | all data control threads have been joined
[2025-11-26 18:41:59] 2025-11-26 23:41:01,648 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:41:59] 2025-11-26 23:41:01,803 | INFO     | all payload control threads have been joined
[2025-11-26 18:41:59] 2025-11-26 23:41:02,266 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:02,267 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:02,267 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:02,273 | INFO     | [job] control thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:02,593 | INFO     | [data] control thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:02,696 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:02,808 | INFO     | [payload] control thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:03,001 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:03,019 | INFO     | [job] validate thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:03,034 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:03,399 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:03,445 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:03,587 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:03,630 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:03,653 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:05,360 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:41:59] 2025-11-26 23:41:31,968 | INFO     | PID=1615679 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:41:59] 2025-11-26 23:41:31,968 | INFO     | .. there are 8 such processes running
[2025-11-26 18:41:59] 2025-11-26 23:41:31,968 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:41:59] 2025-11-26 23:41:31,968 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:41:59] 2025-11-26 23:41:31,968 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:41:59] 2025-11-26 23:41:52,415 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:41:59] 2025-11-26 23:41:54,517 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138655932798784)>', '<ExcThread(monitor, started 138655651825408)>']
[2025-11-26 18:41:59] 2025-11-26 23:41:55,068 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:41:59] 2025-11-26 23:41:55,069 | INFO     | [monitor] control thread has ended
[2025-11-26 18:41:59] 2025-11-26 23:41:59,541 | INFO     | all workflow threads have been joined
[2025-11-26 18:41:59] 2025-11-26 23:41:59,542 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:41:59] 2025-11-26 23:41:59,542 | INFO     | traces error code: 0
[2025-11-26 18:41:59] 2025-11-26 23:41:59,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:41:59] 2025-11-26 23:41:59,622 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:41:59] 2025-11-26 23:41:59,624 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:41:59] 2025-11-26 23:41:59,626 [wrapper] pilotpid: 1615679
[2025-11-26 18:41:59] 2025-11-26 23:41:59,628 [wrapper] Pilot exit status: 0
[2025-11-26 18:41:59] 2025-11-26 23:41:59,635 [wrapper] pandaids: 6895356335
[2025-11-26 18:41:59] 2025-11-26 23:41:59,678 [wrapper] cleanup supervisor_pilot 2182288 1615680
[2025-11-26 18:41:59] 2025-11-26 23:41:59,680 [wrapper] Test setup, not cleaning
[2025-11-26 18:41:59] 2025-11-26 23:41:59,682 [wrapper] apfmon messages muted
[2025-11-26 18:41:59] 2025-11-26 23:41:59,684 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:41:59] 2025-11-26 23:41:59,686 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:41:59]  *** Error codes and diagnostics ***
[2025-11-26 18:41:59]     "exeErrorCode": 0,
[2025-11-26 18:41:59]     "exeErrorDiag": "",
[2025-11-26 18:41:59]     "pilotErrorCode": 0,
[2025-11-26 18:41:59]     "pilotErrorDiag": "",
[2025-11-26 18:41:59]  *** Listing of results directory ***
[2025-11-26 18:41:59] total 1320232
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc    576529 Nov 23 05:16 pilot3.tar.gz
[2025-11-26 18:41:59] -rwx------ 1 boinc boinc     36292 Nov 23 06:02 runpilot2-wrapper.sh
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:02 queuedata.json
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc       100 Nov 26 07:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:41:59] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 07:14 run_atlas
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc       105 Nov 26 07:14 job.xml
[2025-11-26 18:41:59] -rw-r--r-- 2 boinc boinc 410645212 Nov 26 07:14 EVNT.47483658._001154.pool.root.1
[2025-11-26 18:41:59] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:14 start_atlas.sh
[2025-11-26 18:41:59] drwxrwx--x 2 boinc boinc      4096 Nov 26 07:14 shared
[2025-11-26 18:41:59] -rw-r--r-- 2 boinc boinc    590108 Nov 26 07:14 input.tar.gz
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc      9666 Nov 26 07:14 init_data.xml
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc         0 Nov 26 07:14 boinc_lockfile
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc      2784 Nov 26 07:14 pandaJob.out
[2025-11-26 18:41:59] -rw------- 1 boinc boinc    991830 Nov 26 07:14 agis_schedconf.cvmfs.json
[2025-11-26 18:41:59] drwx------ 5 boinc boinc      4096 Nov 26 07:14 pilot3
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc       532 Nov 26 18:36 boinc_task_state.xml
[2025-11-26 18:41:59] -rw------- 1 boinc boinc 922866256 Nov 26 18:40 HITS.47556149._001408.pool.root.1
[2025-11-26 18:41:59] -rw------- 1 boinc boinc      1032 Nov 26 18:40 memory_monitor_summary.json
[2025-11-26 18:41:59] -rw------- 1 boinc boinc   1516240 Nov 26 18:40 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:41:59] -rw------- 1 boinc boinc   1464738 Nov 26 18:40 log.47556149._001408.job.log.tgz.1
[2025-11-26 18:41:59] -rw------- 1 boinc boinc      8565 Nov 26 18:40 heartbeat.json
[2025-11-26 18:41:59] -rw------- 1 boinc boinc        95 Nov 26 18:41 pilot_heartbeat.json
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc        29 Nov 26 18:41 wrapper_checkpoint.txt
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc      8192 Nov 26 18:41 boinc_mmap_file
[2025-11-26 18:41:59] -rw------- 1 boinc boinc      4825 Nov 26 18:41 pilotlog.txt
[2025-11-26 18:41:59] -rw------- 1 boinc boinc   5772866 Nov 26 18:41 log.47556149._001408.job.log.1
[2025-11-26 18:41:59] -rw------- 1 boinc boinc       353 Nov 26 18:41 output.list
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc       620 Nov 26 18:41 runtime_log
[2025-11-26 18:41:59] -rw------- 1 boinc boinc   7260160 Nov 26 18:41 result.tar.gz
[2025-11-26 18:41:59] -rw------- 1 boinc boinc       653 Nov 26 18:41 vc6NDm71Mh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfoKKDmiJtSNm.diag
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc      8786 Nov 26 18:41 runtime_log.err
[2025-11-26 18:41:59] -rw-r--r-- 1 boinc boinc     21375 Nov 26 18:41 stderr.txt
[2025-11-26 18:41:59] HITS file was successfully produced:
[2025-11-26 18:41:59] -rw------- 1 boinc boinc 922866256 Nov 26 18:40 shared/HITS.pool.root.1
[2025-11-26 18:41:59]  *** Contents of shared directory: ***
[2025-11-26 18:41:59] total 1309960
[2025-11-26 18:41:59] -rw-r--r-- 2 boinc boinc 410645212 Nov 26 07:14 ATLAS.root_0
[2025-11-26 18:41:59] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:14 start_atlas.sh
[2025-11-26 18:41:59] -rw-r--r-- 2 boinc boinc    590108 Nov 26 07:14 input.tar.gz
[2025-11-26 18:41:59] -rw------- 1 boinc boinc 922866256 Nov 26 18:40 HITS.pool.root.1
[2025-11-26 18:41:59] -rw------- 1 boinc boinc   7260160 Nov 26 18:41 result.tar.gz
18:42:01 (1611819): run_atlas exited; CPU time 160752.520845
18:42:01 (1611819): called boinc_finish(0)

</stderr_txt>
]]>

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