Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:54:14 (461978): wrapper (7.7.26015): starting
08:54:14 (461978): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 08:54:14] Arguments: --nthreads 8
[2025-11-25 08:54:14] Threads: 8
[2025-11-25 08:54:14] Checking for CVMFS
[2025-11-25 08:54:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:54:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:54:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:54:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:54:17] 2.13.3.0 13122 28697 367424 153284 1 361 26879039 32935936 45975 16776704 0 140005241 99.563 157585707 36245 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 08:54:17] CVMFS is ok
[2025-11-25 08:54:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:54:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:54:17] Further information can be found at the LHC@home message board.
[2025-11-25 08:54:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:54:17] Checking for apptainer binary...
[2025-11-25 08:54:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:54:17] Running /usr/bin/apptainer --version
[2025-11-25 08:54:17] apptainer version 1.4.4-1.el9
[2025-11-25 08:54:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:54:18] c6-8-25-2.aglt2.org
[2025-11-25 08:54:18] apptainer works
[2025-11-25 08:54:18] Set ATHENA_PROC_NUMBER=8
[2025-11-25 08:54:18] Set ATHENA_CORE_NUMBER=8
[2025-11-25 08:54:18] Starting ATLAS job with PandaID=6894053118
[2025-11-25 08:54:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:41:03]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:41:03] 2025-11-25 17:39:49,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:03] 2025-11-25 17:39:51,570 | INFO     | PID=466586 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:41:03] 2025-11-25 17:39:51,570 | INFO     | .. there are 60 such processes running
[2025-11-25 12:41:03] 2025-11-25 17:39:52,134 | INFO     | monitor loop #695: job 0:6894053118 is in state 'finished'
[2025-11-25 12:41:03] 2025-11-25 17:39:52,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:03] 2025-11-25 17:39:52,572 | INFO     | time since job start (13461s) is within the limit (172800.0s)
[2025-11-25 12:41:03] 2025-11-25 17:39:53,496 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 12:41:03] 2025-11-25 17:39:53,520 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2749.645499999999
[2025-11-25 12:41:03] 2025-11-25 17:39:53,549 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6894053118/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:41:03] 2025-11-25 17:39:53,551 | INFO     | extracted standard info from prmon json
[2025-11-25 12:41:03] 2025-11-25 17:39:53,551 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:41:03] 2025-11-25 17:39:53,551 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:41:03] 2025-11-25 17:39:53,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 12:41:03] 2025-11-25 17:39:53,555 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 12:41:03] 2025-11-25 17:39:53,567 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:41:03] 2025-11-25 17:39:53,568 | INFO     | sum of square deviations: 3212302139.0137534
[2025-11-25 12:41:03] 2025-11-25 17:39:53,570 | INFO     | sum of deviations: 33192436001.931206
[2025-11-25 12:41:03] 2025-11-25 17:39:53,570 | INFO     | mean x: 1764085699.582569
[2025-11-25 12:41:03] 2025-11-25 17:39:53,570 | INFO     | mean y: 2571155.0871559633
[2025-11-25 12:41:03] 2025-11-25 17:39:53,570 | INFO     | intersect: -18225571513.73848
[2025-11-25 12:41:03] 2025-11-25 17:39:53,576 | INFO     | chi2: 3.080564703863902
[2025-11-25 12:41:03] 2025-11-25 17:39:53,577 | INFO     | sum of square deviations: 2996294276.478866
[2025-11-25 12:41:03] 2025-11-25 17:39:53,578 | INFO     | sum of deviations: 46309641679.57744
[2025-11-25 12:41:03] 2025-11-25 17:39:53,578 | INFO     | mean x: 1764085547.084507
[2025-11-25 12:41:03] 2025-11-25 17:39:53,579 | INFO     | mean y: 2580230.0234741783
[2025-11-25 12:41:03] 2025-11-25 17:39:53,579 | INFO     | intersect: -27262488564.757526
[2025-11-25 12:41:03] 2025-11-25 17:39:53,579 | INFO     | chi2: 2.413156443180278
[2025-11-25 12:41:03] 2025-11-25 17:39:53,579 | INFO     | current chi2=2.413156443180278 (change=21.665127171213275 %)
[2025-11-25 12:41:03] 2025-11-25 17:39:53,579 | INFO     | right removable region: 212
[2025-11-25 12:41:03] 2025-11-25 17:39:53,580 | INFO     | sum of square deviations: 2996296349.643203
[2025-11-25 12:41:03] 2025-11-25 17:39:53,592 | INFO     | sum of deviations: -17220608682.43662
[2025-11-25 12:41:03] 2025-11-25 17:39:53,593 | INFO     | mean x: 1764085852.0798123
[2025-11-25 12:41:03] 2025-11-25 17:39:53,593 | INFO     | mean y: 2606520.084507042
[2025-11-25 12:41:03] 2025-11-25 17:39:53,593 | INFO     | intersect: 10141334000.93155
[2025-11-25 12:41:03] 2025-11-25 17:39:53,593 | INFO     | chi2: 0.8333511285115427
[2025-11-25 12:41:03] 2025-11-25 17:39:53,593 | INFO     | current chi2=0.8333511285115427 (change=72.94810501898293 %)
[2025-11-25 12:41:03] 2025-11-25 17:39:53,594 | INFO     | sum of square deviations: 2790184974.6105895
[2025-11-25 12:41:03] 2025-11-25 17:39:53,599 | INFO     | sum of deviations: -19756175275.4423
[2025-11-25 12:41:03] 2025-11-25 17:39:53,600 | INFO     | mean x: 1764086004.5817308
[2025-11-25 12:41:03] 2025-11-25 17:39:53,600 | INFO     | mean y: 2608369.673076923
[2025-11-25 12:41:03] 2025-11-25 17:39:53,600 | INFO     | intersect: 12493390387.569729
[2025-11-25 12:41:03] 2025-11-25 17:39:53,600 | INFO     | chi2: 0.818664085443933
[2025-11-25 12:41:03] 2025-11-25 17:39:53,600 | INFO     | current chi2=0.818664085443933 (change=1.762407533285806 %)
[2025-11-25 12:41:03] 2025-11-25 17:39:53,601 | INFO     | left removable region: 20
[2025-11-25 12:41:03] 2025-11-25 17:39:53,601 | INFO     | sum of square deviations: 2194557059.119782
[2025-11-25 12:41:03] 2025-11-25 17:39:53,602 | INFO     | sum of deviations: 8498353301.656255
[2025-11-25 12:41:03] 2025-11-25 17:39:53,602 | INFO     | mean x: 1764086126.5677083
[2025-11-25 12:41:03] 2025-11-25 17:39:53,602 | INFO     | mean y: 2606644.71875
[2025-11-25 12:41:03] 2025-11-25 17:39:53,602 | INFO     | intersect: -6828761487.552903
[2025-11-25 12:41:03] 2025-11-25 17:39:53,603 | INFO     | chi2: 0.0018665657295888335
[2025-11-25 12:41:03] 2025-11-25 17:39:53,603 | INFO     | current memory leak: 3.87 B/s (using 192 data points, chi2=0.00)
[2025-11-25 12:41:03] 2025-11-25 17:39:53,608 | INFO     | could have reported an average CPU frequency of 2705 MHz (11 samples)
[2025-11-25 12:41:03] 2025-11-25 17:39:53,608 | INFO     | ..............................
[2025-11-25 12:41:03] 2025-11-25 17:39:53,608 | INFO     | . Timing measurements:
[2025-11-25 12:41:03] 2025-11-25 17:39:53,608 | INFO     | . get job = 0 s
[2025-11-25 12:41:03] 2025-11-25 17:39:53,608 | INFO     | . initial setup = 7 s
[2025-11-25 12:41:03] 2025-11-25 17:39:53,608 | INFO     | . payload setup = 44 s
[2025-11-25 12:41:03] 2025-11-25 17:39:53,608 | INFO     | . stage-in = 0 s
[2025-11-25 12:41:03] 2025-11-25 17:39:53,609 | INFO     | . payload execution = 13317 s
[2025-11-25 12:41:03] 2025-11-25 17:39:53,609 | INFO     | . stage-out = 4 s
[2025-11-25 12:41:03] 2025-11-25 17:39:53,609 | INFO     | . log creation = 0 s
[2025-11-25 12:41:03] 2025-11-25 17:39:53,609 | INFO     | ..............................
[2025-11-25 12:41:03] 2025-11-25 17:39:54,032 | INFO     | 
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | job summary report
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | --------------------------------------------------
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | PanDA job id: 6894053118
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | task id: 47523618
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | errors: (none)
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | pilot state: finished 
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | transexitcode: 0
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | exeerrorcode: 0
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | exeerrordiag: 
[2025-11-25 12:41:03] 2025-11-25 17:39:54,034 | INFO     | exitcode: 0
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | exitmsg: OK
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | cpuconsumptiontime: 72023 s
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | nevents: 400
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | neventsw: 0
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | pid: 475969
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | pgrp: 475969
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | corecount: 8
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | event service: False
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | sizes: {0: 2283118, 1: 2283803, 2: 2284002, 14: 2284002, 25: 2284030, 34: 2284320, 37: 2284476, 13363: 2314433, 13367: 2323431, 13369: 2323487, 13389: 2323681}
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | --------------------------------------------------
[2025-11-25 12:41:03] 2025-11-25 17:39:54,035 | INFO     | 
[2025-11-25 12:41:03] 2025-11-25 17:39:54,036 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 12:41:03] 2025-11-25 17:39:54,222 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,222 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,222 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,224 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,224 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,224 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:41:03] 2025-11-25 17:39:54,224 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,224 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:41:03] 2025-11-25 17:39:54,224 | INFO     | job 6894053118 has completed (purged errors)
[2025-11-25 12:41:03] 2025-11-25 17:39:54,224 | INFO     | overall cleanup function is called
[2025-11-25 12:41:03] 2025-11-25 17:39:55,237 | INFO     | --- collectZombieJob: --- 10, [475969]
[2025-11-25 12:41:03] 2025-11-25 17:39:55,238 | INFO     | zombie collector waiting for pid 475969
[2025-11-25 12:41:03] 2025-11-25 17:39:55,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:41:03] 2025-11-25 17:39:55,238 | INFO     | collected zombie processes
[2025-11-25 12:41:03] 2025-11-25 17:39:55,238 | INFO     | will attempt to kill all subprocesses of pid=475969
[2025-11-25 12:41:03] 2025-11-25 17:39:57,321 | INFO     | process IDs to be killed: [475969] (in reverse order)
[2025-11-25 12:41:03] 2025-11-25 17:39:57,624 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:41:03] 2025-11-25 17:39:57,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:41:03] 2025-11-25 17:39:57,674 | INFO     | did not find any defunct processes belonging to 475969
[2025-11-25 12:41:03] 2025-11-25 17:39:57,715 | INFO     | did not find any defunct processes belonging to 475969
[2025-11-25 12:41:03] 2025-11-25 17:39:57,717 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:41:03] 2025-11-25 17:39:57,717 | INFO     | ready for new job
[2025-11-25 12:41:03] 2025-11-25 17:39:57,717 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:41:03] 2025-11-25 17:39:57,719 | INFO     | ***************************************
[2025-11-25 12:41:03] 2025-11-25 17:39:57,719 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:41:03] 2025-11-25 17:39:57,719 | INFO     | ***************************************
[2025-11-25 12:41:03] 2025-11-25 17:39:57,719 | INFO     | 
[2025-11-25 12:41:03] 2025-11-25 17:39:57,725 | INFO     | architecture information:
[2025-11-25 12:41:03] 2025-11-25 17:39:57,726 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:41:03] 2025-11-25 17:39:57,766 | INFO     | cat /etc/os-release:
[2025-11-25 12:41:03] NAME="CentOS Linux"
[2025-11-25 12:41:03] VERSION="7 (Core)"
[2025-11-25 12:41:03] ID="centos"
[2025-11-25 12:41:03] ID_LIKE="rhel fedora"
[2025-11-25 12:41:03] VERSION_ID="7"
[2025-11-25 12:41:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:41:03] ANSI_COLOR="0;31"
[2025-11-25 12:41:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:41:03] HOME_URL="https://www.centos.org/"
[2025-11-25 12:41:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:41:03] 
[2025-11-25 12:41:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:41:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:41:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:41:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:41:03] 
[2025-11-25 12:41:03] 2025-11-25 17:39:57,767 | INFO     | ***************************************
[2025-11-25 12:41:03] 2025-11-25 17:39:58,270 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 12:41:03] 2025-11-25 17:39:58,357 | INFO     | sufficient remaining disk space (70645710848 B)
[2025-11-25 12:41:03] 2025-11-25 17:39:58,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:41:03] 2025-11-25 17:39:58,357 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:41:03] 2025-11-25 17:39:58,358 | INFO     | update_server=False
[2025-11-25 12:41:03] 2025-11-25 17:39:58,358 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:41:03] 2025-11-25 17:39:58,358 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:41:03] 2025-11-25 17:39:58,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:41:03] 2025-11-25 17:39:58,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:41:03] 2025-11-25 17:39:58,363 | INFO     | aborting loop
[2025-11-25 12:41:03] 2025-11-25 17:39:58,526 | INFO     | all payload control threads have been joined
[2025-11-25 12:41:03] 2025-11-25 17:39:58,930 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:41:03] 2025-11-25 17:39:58,947 | INFO     | all data control threads have been joined
[2025-11-25 12:41:03] 2025-11-25 17:39:59,364 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:39:59,372 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:39:59,466 | INFO     | all job control threads have been joined
[2025-11-25 12:41:03] 2025-11-25 17:39:59,533 | INFO     | [payload] control thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:39:59,582 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:39:59,938 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:39:59,987 | INFO     | [data] control thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:39:59,988 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:00,364 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:00,375 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:00,376 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:00,477 | INFO     | [job] control thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:00,497 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:00,659 | INFO     | [job] validate thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:00,711 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:02,366 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:09,076 | INFO     | job.realtimelogging is not enabled
[2025-11-25 12:41:03] 2025-11-25 17:40:10,082 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:41:03] 2025-11-25 17:40:19,107 [wrapper] supervise_pilot (15 min periods counter: 16)
[2025-11-25 12:41:03] 2025-11-25 17:40:28,394 | INFO     | PID=466586 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 12:41:03] 2025-11-25 17:40:28,394 | INFO     | .. there are 60 such processes running
[2025-11-25 12:41:03] 2025-11-25 17:40:28,395 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:41:03] 2025-11-25 17:40:28,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:41:03] 2025-11-25 17:40:28,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:41:03] 2025-11-25 17:40:55,534 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:41:03] 2025-11-25 17:40:56,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379153110848)>', '<ExcThread(monitor, started 140378506254080)>']
[2025-11-25 12:41:03] 2025-11-25 17:40:56,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:41:03] 2025-11-25 17:40:56,608 | INFO     | [monitor] control thread has ended
[2025-11-25 12:41:03] 2025-11-25 17:41:01,072 | INFO     | all workflow threads have been joined
[2025-11-25 12:41:03] 2025-11-25 17:41:01,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:41:03] 2025-11-25 17:41:01,073 | INFO     | traces error code: 0
[2025-11-25 12:41:03] 2025-11-25 17:41:01,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:41:03] 2025-11-25 17:41:01,964 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:41:03] 2025-11-25 17:41:01,975 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:41:03] 2025-11-25 17:41:02,029 [wrapper] pilotpid: 466586
[2025-11-25 12:41:03] 2025-11-25 17:41:02,057 [wrapper] Pilot exit status: 0
[2025-11-25 12:41:03] 2025-11-25 17:41:02,137 [wrapper] pandaids: 6894053118
[2025-11-25 12:41:03] 2025-11-25 17:41:02,344 [wrapper] cleanup supervisor_pilot 1589194 466587
[2025-11-25 12:41:03] 2025-11-25 17:41:02,349 [wrapper] Test setup, not cleaning
[2025-11-25 12:41:03] 2025-11-25 17:41:02,366 [wrapper] apfmon messages muted
[2025-11-25 12:41:03] 2025-11-25 17:41:02,393 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:41:03] 2025-11-25 17:41:02,407 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:41:03]  *** Error codes and diagnostics ***
[2025-11-25 12:41:03]     "exeErrorCode": 0,
[2025-11-25 12:41:03]     "exeErrorDiag": "",
[2025-11-25 12:41:03]     "pilotErrorCode": 0,
[2025-11-25 12:41:03]     "pilotErrorDiag": "",
[2025-11-25 12:41:03]  *** Listing of results directory ***
[2025-11-25 12:41:03] total 600404
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 12:39 pilot3.tar.gz
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 12:42 queuedata.json
[2025-11-25 12:41:03] -rwx------. 1 boincer umatlas     36292 Nov 23 12:43 runpilot2-wrapper.sh
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas       100 Nov 25 08:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:41:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 08:54 run_atlas
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas       105 Nov 25 08:54 job.xml
[2025-11-25 12:41:03] -rw-r--r--. 2 boincer umatlas 306398582 Nov 25 08:54 EVNT.47523616._000003.pool.root.1
[2025-11-25 12:41:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 08:54 start_atlas.sh
[2025-11-25 12:41:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 08:54 shared
[2025-11-25 12:41:03] -rw-r--r--. 2 boincer umatlas    589954 Nov 25 08:54 input.tar.gz
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas         0 Nov 25 08:54 boinc_lockfile
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas      2611 Nov 25 08:54 pandaJob.out
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas        57 Nov 25 08:54 setup.sh.local
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas    991909 Nov 25 08:55 agis_schedconf.cvmfs.json
[2025-11-25 12:41:03] drwx------. 5 boincer umatlas      4096 Nov 25 08:55 pilot3
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas 300603807 Nov 25 12:37 HITS.47523618._000064.pool.root.1
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas       531 Nov 25 12:37 boinc_task_state.xml
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas      6877 Nov 25 12:39 init_data.xml
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas      1048 Nov 25 12:39 memory_monitor_summary.json
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:39 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas    430489 Nov 25 12:39 log.47523618._000064.job.log.tgz.1
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas      7823 Nov 25 12:39 heartbeat.json
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas        95 Nov 25 12:40 pilot_heartbeat.json
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas        28 Nov 25 12:40 wrapper_checkpoint.txt
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas      4895 Nov 25 12:41 pilotlog.txt
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas   1514189 Nov 25 12:41 log.47523618._000064.job.log.1
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:41 boinc_mmap_file
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas       357 Nov 25 12:41 output.list
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:41 runtime_log
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas   1966080 Nov 25 12:41 result.tar.gz
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 12:41 runtime_log.err
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas       657 Nov 25 12:41 3UoLDmuITh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmM4KKDmhH6Tzn.diag
[2025-11-25 12:41:03] -rw-r--r--. 1 boincer umatlas     21555 Nov 25 12:41 stderr.txt
[2025-11-25 12:41:03] HITS file was successfully produced:
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas 300603807 Nov 25 12:37 shared/HITS.pool.root.1
[2025-11-25 12:41:03]  *** Contents of shared directory: ***
[2025-11-25 12:41:03] total 595304
[2025-11-25 12:41:03] -rw-r--r--. 2 boincer umatlas 306398582 Nov 25 08:54 ATLAS.root_0
[2025-11-25 12:41:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 08:54 start_atlas.sh
[2025-11-25 12:41:03] -rw-r--r--. 2 boincer umatlas    589954 Nov 25 08:54 input.tar.gz
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas 300603807 Nov 25 12:37 HITS.pool.root.1
[2025-11-25 12:41:03] -rw-------. 1 boincer umatlas   1966080 Nov 25 12:41 result.tar.gz
12:41:04 (461978): run_atlas exited; CPU time 72788.437882
12:41:04 (461978): called boinc_finish(0)

</stderr_txt>
]]>

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