Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:22:16 (785937): wrapper (7.7.26015): starting
14:22:16 (785937): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 14:22:16] Arguments: --nthreads 3
[2025-11-25 14:22:16] Threads: 3
[2025-11-25 14:22:16] Checking for CVMFS
[2025-11-25 14:22:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:22:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:22:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:22:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:22:16] 2.9.2.0 411005 81 59112 153284 3 88 35190084 36864001 0 130560 0 1126834 100.000 3958 12977 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 14:22:16] CVMFS is ok
[2025-11-25 14:22:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 14:22:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 14:22:16] Further information can be found at the LHC@home message board.
[2025-11-25 14:22:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:22:16] Checking for apptainer binary...
[2025-11-25 14:22:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:22:16] Running /usr/bin/apptainer --version
[2025-11-25 14:22:16] apptainer version 1.4.1-1.1
[2025-11-25 14:22:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:22:16] thA335
[2025-11-25 14:22:16] apptainer works
[2025-11-25 14:22:16] Set ATHENA_PROC_NUMBER=3
[2025-11-25 14:22:16] Set ATHENA_CORE_NUMBER=3
[2025-11-25 14:22:16] Starting ATLAS job with PandaID=6896450022
[2025-11-25 14:22:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:26:30]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:26:30] 2025-11-25 13:25:42,359 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 14:26:30] 2025-11-25 13:25:42,359 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 14:26:30] 2025-11-25 13:25:42,359 | INFO     | update_server=False
[2025-11-25 14:26:30] 2025-11-25 13:25:42,359 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:26:30] 2025-11-25 13:25:42,359 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:26:30] 2025-11-25 13:25:42,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:26:30] 2025-11-25 13:25:42,360 | INFO     | aborting loop
[2025-11-25 14:26:30] 2025-11-25 13:25:43,019 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:26:30] 2025-11-25 13:25:43,188 | INFO     | all job control threads have been joined
[2025-11-25 14:26:30] 2025-11-25 13:25:43,252 | INFO     | all data control threads have been joined
[2025-11-25 14:26:30] 2025-11-25 13:25:43,365 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:43,366 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:43,366 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:43,512 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:43,754 | INFO     | all payload control threads have been joined
[2025-11-25 14:26:30] 2025-11-25 13:25:44,061 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:44,090 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:44,194 | INFO     | [job] control thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:44,258 | INFO     | [data] control thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:44,272 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:44,603 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:44,684 | INFO     | [job] validate thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:44,760 | INFO     | [payload] control thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:44,782 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:44,846 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:45,026 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:25:45,345 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:26:30] 2025-11-25 13:25:49,352 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:26:30] 2025-11-25 13:26:12,289 | INFO     | PID=789658 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 14:26:30] 2025-11-25 13:26:12,289 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:26:30] 2025-11-25 13:26:12,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:26:30] 2025-11-25 13:26:12,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:26:30] 2025-11-25 13:26:23,376 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:26:30] 2025-11-25 13:26:25,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996818229056)>', '<ExcThread(monitor, started 139996161877760)>']
[2025-11-25 14:26:30] 2025-11-25 13:26:25,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:26:30] 2025-11-25 13:26:25,358 | INFO     | [monitor] control thread has ended
[2025-11-25 14:26:30] 2025-11-25 13:26:30,219 | INFO     | all workflow threads have been joined
[2025-11-25 14:26:30] 2025-11-25 13:26:30,220 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:26:30] 2025-11-25 13:26:30,220 | INFO     | traces error code: 0
[2025-11-25 14:26:30] 2025-11-25 13:26:30,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:26:30] 2025-11-25 13:26:30,267 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:26:30] 2025-11-25 13:26:30,270 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:26:30] 2025-11-25 13:26:30,273 [wrapper] pilotpid: 789658
[2025-11-25 14:26:30] 2025-11-25 13:26:30,276 [wrapper] Pilot exit status: 0
[2025-11-25 14:26:30] 2025-11-25 13:26:30,283 [wrapper] pandaids: 6896450022
[2025-11-25 14:26:30] 2025-11-25 13:26:30,299 [wrapper] cleanup supervisor_pilot  789664 789659
[2025-11-25 14:26:30] 2025-11-25 13:26:30,302 [wrapper] Test setup, not cleaning
[2025-11-25 14:26:30] 2025-11-25 13:26:30,304 [wrapper] apfmon messages muted
[2025-11-25 14:26:30] 2025-11-25 13:26:30,307 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:26:30] 2025-11-25 13:26:30,309 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:26:30]  *** Error codes and diagnostics ***
[2025-11-25 14:26:30]     "exeErrorCode": 65,
[2025-11-25 14:26:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 14:26:30]     "pilotErrorCode": 1305,
[2025-11-25 14:26:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 14:26:30]  *** Listing of results directory ***
[2025-11-25 14:26:30] total 403480
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc    576529 Nov 25 04:04 pilot3.tar.gz
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc      5112 Nov 25 04:26 queuedata.json
[2025-11-25 14:26:30] -rwx------ 1 boinc boinc     36292 Nov 25 04:29 runpilot2-wrapper.sh
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc       100 Nov 25 14:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:26:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 14:22 run_atlas
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc       105 Nov 25 14:22 job.xml
[2025-11-25 14:26:30] -rw-r--r-- 2 boinc boinc 408962410 Nov 25 14:22 EVNT.47483658._001490.pool.root.1
[2025-11-25 14:26:30] -rw-r--r-- 2 boinc boinc    590112 Nov 25 14:22 input.tar.gz
[2025-11-25 14:26:30] -rw-r--r-- 2 boinc boinc     15847 Nov 25 14:22 start_atlas.sh
[2025-11-25 14:26:30] drwxrwx--x 2 boinc boinc      4096 Nov 25 14:22 shared
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc         0 Nov 25 14:22 boinc_setup_complete
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc      6196 Nov 25 14:22 init_data.xml
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc         0 Nov 25 14:22 boinc_lockfile
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc      2785 Nov 25 14:22 pandaJob.out
[2025-11-25 14:26:30] -rw------- 1 boinc boinc    991909 Nov 25 14:22 agis_schedconf.cvmfs.json
[2025-11-25 14:26:30] -rw------- 1 boinc boinc   1516240 Nov 25 14:22 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:26:30] drwx------ 5 boinc boinc      4096 Nov 25 14:22 pilot3
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc       523 Nov 25 14:23 boinc_task_state.xml
[2025-11-25 14:26:30] -rw------- 1 boinc boinc       957 Nov 25 14:23 memory_monitor_summary.json
[2025-11-25 14:26:30] -rw------- 1 boinc boinc     55621 Nov 25 14:23 log.47556149._004767.job.log.tgz.1
[2025-11-25 14:26:30] -rw------- 1 boinc boinc        95 Nov 25 14:25 pilot_heartbeat.json
[2025-11-25 14:26:30] -rw------- 1 boinc boinc      8404 Nov 25 14:25 heartbeat.json
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc      8192 Nov 25 14:26 boinc_mmap_file
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc        23 Nov 25 14:26 wrapper_checkpoint.txt
[2025-11-25 14:26:30] -rw------- 1 boinc boinc      4751 Nov 25 14:26 pilotlog.txt
[2025-11-25 14:26:30] -rw------- 1 boinc boinc     93715 Nov 25 14:26 log.47556149._004767.job.log.1
[2025-11-25 14:26:30] -rw------- 1 boinc boinc       186 Nov 25 14:26 output.list
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc       620 Nov 25 14:26 runtime_log
[2025-11-25 14:26:30] -rw------- 1 boinc boinc    174080 Nov 25 14:26 result.tar.gz
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc      8744 Nov 25 14:26 runtime_log.err
[2025-11-25 14:26:30] -rw------- 1 boinc boinc       649 Nov 25 14:26 nyaLDmZvyh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIIJKDmdQm9Zm.diag
[2025-11-25 14:26:30] -rw-r--r-- 1 boinc boinc      8013 Nov 25 14:26 stderr.txt
[2025-11-25 14:26:30] No HITS result produced
[2025-11-25 14:26:30]  *** Contents of shared directory: ***
[2025-11-25 14:26:30] total 400152
[2025-11-25 14:26:30] -rw-r--r-- 2 boinc boinc 408962410 Nov 25 14:22 ATLAS.root_0
[2025-11-25 14:26:30] -rw-r--r-- 2 boinc boinc    590112 Nov 25 14:22 input.tar.gz
[2025-11-25 14:26:30] -rw-r--r-- 2 boinc boinc     15847 Nov 25 14:22 start_atlas.sh
[2025-11-25 14:26:30] -rw------- 1 boinc boinc    174080 Nov 25 14:26 result.tar.gz
14:26:31 (785937): run_atlas exited; CPU time 31.375067
14:26:31 (785937): called boinc_finish(0)

</stderr_txt>
]]>

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