Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:31:16 (12830): wrapper (7.7.26015): starting
08:31:16 (12830): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 08:31:16] Arguments: --nthreads 8
[2025-11-25 08:31:16] Threads: 8
[2025-11-25 08:31:16] Checking for CVMFS
[2025-11-25 08:31:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:31:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:31:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:31:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:31:17] 2.11.2.0 2781 70232 85980 153284 3 82 16301255 20275200 1 130560 0 20036600 99.871 3966544 33287 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 08:31:17] CVMFS is ok
[2025-11-25 08:31:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:31:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:31:17] Further information can be found at the LHC@home message board.
[2025-11-25 08:31:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:31:17] Checking for apptainer binary...
[2025-11-25 08:31:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:31:17] Running /usr/bin/apptainer --version
[2025-11-25 08:31:17] apptainer version 1.3.2-1.el7
[2025-11-25 08:31:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:31:18] c-115-16.aglt2.org
[2025-11-25 08:31:18] apptainer works
[2025-11-25 08:31:18] Set ATHENA_PROC_NUMBER=8
[2025-11-25 08:31:18] Set ATHENA_CORE_NUMBER=8
[2025-11-25 08:31:18] Starting ATLAS job with PandaID=6895674849
[2025-11-25 08:31:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:43:11]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:43:11] 2025-11-26 00:42:39,239 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,361 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 19:43:11] 2025-11-26 00:42:39,367 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1845.625
[2025-11-25 19:43:11] 2025-11-26 00:42:39,370 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895674849/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,371 | INFO     | extracted standard info from prmon json
[2025-11-25 19:43:11] 2025-11-26 00:42:39,371 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:43:11] 2025-11-26 00:42:39,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:43:11] 2025-11-26 00:42:39,382 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:43:11] 2025-11-26 00:42:39,383 | INFO     | sum of square deviations: 89147661546.05327
[2025-11-25 19:43:11] 2025-11-26 00:42:39,391 | INFO     | sum of deviations: 611973230940.6367
[2025-11-25 19:43:11] 2025-11-26 00:42:39,392 | INFO     | mean x: 1764097627.128788
[2025-11-25 19:43:11] 2025-11-26 00:42:39,392 | INFO     | mean y: 3204819.1454545455
[2025-11-25 19:43:11] 2025-11-26 00:42:39,392 | INFO     | intersect: -12106821465.851475
[2025-11-25 19:43:11] 2025-11-26 00:42:39,393 | INFO     | chi2: 5.823345330232163
[2025-11-25 19:43:11] 2025-11-26 00:42:39,393 | INFO     | sum of square deviations: 87137015534.06076
[2025-11-25 19:43:11] 2025-11-26 00:42:39,402 | INFO     | sum of deviations: 845482711487.7695
[2025-11-25 19:43:11] 2025-11-26 00:42:39,402 | INFO     | mean x: 1764097474.6335878
[2025-11-25 19:43:11] 2025-11-26 00:42:39,402 | INFO     | mean y: 3222515.5740458015
[2025-11-25 19:43:11] 2025-11-26 00:42:39,402 | INFO     | intersect: -17113658376.438128
[2025-11-25 19:43:11] 2025-11-26 00:42:39,403 | INFO     | chi2: 2.944413525111367
[2025-11-25 19:43:11] 2025-11-26 00:42:39,403 | INFO     | current chi2=2.944413525111367 (change=49.437765439990145 %)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,404 | INFO     | sum of square deviations: 85156835209.53821
[2025-11-25 19:43:11] 2025-11-26 00:42:39,412 | INFO     | sum of deviations: 920242642738.1077
[2025-11-25 19:43:11] 2025-11-26 00:42:39,412 | INFO     | mean x: 1764097322.1384616
[2025-11-25 19:43:11] 2025-11-26 00:42:39,412 | INFO     | mean y: 3228261.4876923077
[2025-11-25 19:43:11] 2025-11-26 00:42:39,412 | INFO     | intersect: -19060392148.751366
[2025-11-25 19:43:11] 2025-11-26 00:42:39,413 | INFO     | chi2: 2.51035680661146
[2025-11-25 19:43:11] 2025-11-26 00:42:39,413 | INFO     | current chi2=2.51035680661146 (change=14.741703731424385 %)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,413 | INFO     | right removable region: 649
[2025-11-25 19:43:11] 2025-11-26 00:42:39,414 | INFO     | sum of square deviations: 87136762384.0607
[2025-11-25 19:43:11] 2025-11-26 00:42:39,422 | INFO     | sum of deviations: 407440881712.8164
[2025-11-25 19:43:11] 2025-11-26 00:42:39,422 | INFO     | mean x: 1764097779.6335878
[2025-11-25 19:43:11] 2025-11-26 00:42:39,422 | INFO     | mean y: 3220300.2992366413
[2025-11-25 19:43:11] 2025-11-26 00:42:39,422 | INFO     | intersect: -8245485929.954384
[2025-11-25 19:43:11] 2025-11-26 00:42:39,423 | INFO     | chi2: 3.442230713652998
[2025-11-25 19:43:11] 2025-11-26 00:42:39,423 | INFO     | current chi2=3.442230713652998 (change=40.88911925276868 %)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,424 | INFO     | sum of square deviations: 85156448653.35532
[2025-11-25 19:43:11] 2025-11-26 00:42:39,432 | INFO     | sum of deviations: 368078337617.2706
[2025-11-25 19:43:11] 2025-11-26 00:42:39,433 | INFO     | mean x: 1764097932.133846
[2025-11-25 19:43:11] 2025-11-26 00:42:39,433 | INFO     | mean y: 3223329.3876923076
[2025-11-25 19:43:11] 2025-11-26 00:42:39,433 | INFO     | intersect: -7621874294.129822
[2025-11-25 19:43:11] 2025-11-26 00:42:39,434 | INFO     | chi2: 3.4019293589472213
[2025-11-25 19:43:11] 2025-11-26 00:42:39,434 | INFO     | current chi2=3.4019293589472213 (change=1.1707917934125824 %)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,434 | INFO     | left removable region: 20
[2025-11-25 19:43:11] 2025-11-26 00:42:39,434 | INFO     | sum of square deviations: 77166815747.64716
[2025-11-25 19:43:11] 2025-11-26 00:42:39,442 | INFO     | sum of deviations: 630312599606.4696
[2025-11-25 19:43:11] 2025-11-26 00:42:39,442 | INFO     | mean x: 1764097901.6470587
[2025-11-25 19:43:11] 2025-11-26 00:42:39,442 | INFO     | mean y: 3250735.254372019
[2025-11-25 19:43:11] 2025-11-26 00:42:39,443 | INFO     | intersect: -14406222087.671833
[2025-11-25 19:43:11] 2025-11-26 00:42:39,443 | INFO     | chi2: 0.054802923204013664
[2025-11-25 19:43:11] 2025-11-26 00:42:39,443 | INFO     | current memory leak: 8.17 B/s (using 629 data points, chi2=0.05)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,444 | INFO     | could have reported an average CPU frequency of 2384 MHz (26 samples)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,444 | INFO     | ..............................
[2025-11-25 19:43:11] 2025-11-26 00:42:39,444 | INFO     | . Timing measurements:
[2025-11-25 19:43:11] 2025-11-26 00:42:39,445 | INFO     | . get job = 0 s
[2025-11-25 19:43:11] 2025-11-26 00:42:39,445 | INFO     | . initial setup = 2 s
[2025-11-25 19:43:11] 2025-11-26 00:42:39,445 | INFO     | . payload setup = 8 s
[2025-11-25 19:43:11] 2025-11-26 00:42:39,445 | INFO     | . stage-in = 0 s
[2025-11-25 19:43:11] 2025-11-26 00:42:39,445 | INFO     | . payload execution = 40221 s
[2025-11-25 19:43:11] 2025-11-26 00:42:39,445 | INFO     | . stage-out = 3 s
[2025-11-25 19:43:11] 2025-11-26 00:42:39,445 | INFO     | . log creation = 0 s
[2025-11-25 19:43:11] 2025-11-26 00:42:39,445 | INFO     | ..............................
[2025-11-25 19:43:11] 2025-11-26 00:42:39,572 | INFO     | 
[2025-11-25 19:43:11] 2025-11-26 00:42:39,573 | INFO     | job summary report
[2025-11-25 19:43:11] 2025-11-26 00:42:39,573 | INFO     | --------------------------------------------------
[2025-11-25 19:43:11] 2025-11-26 00:42:39,573 | INFO     | PanDA job id: 6895674849
[2025-11-25 19:43:11] 2025-11-26 00:42:39,573 | INFO     | task id: 47556149
[2025-11-25 19:43:11] 2025-11-26 00:42:39,573 | INFO     | errors: (none)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,573 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:43:11] 2025-11-26 00:42:39,573 | INFO     | pilot state: finished 
[2025-11-25 19:43:11] 2025-11-26 00:42:39,573 | INFO     | transexitcode: 0
[2025-11-25 19:43:11] 2025-11-26 00:42:39,573 | INFO     | exeerrorcode: 0
[2025-11-25 19:43:11] 2025-11-26 00:42:39,574 | INFO     | exeerrordiag: 
[2025-11-25 19:43:11] 2025-11-26 00:42:39,574 | INFO     | exitcode: 0
[2025-11-25 19:43:11] 2025-11-26 00:42:39,574 | INFO     | exitmsg: OK
[2025-11-25 19:43:11] 2025-11-26 00:42:39,574 | INFO     | cpuconsumptiontime: 312737 s
[2025-11-25 19:43:11] 2025-11-26 00:42:39,574 | INFO     | nevents: 1000
[2025-11-25 19:43:11] 2025-11-26 00:42:39,574 | INFO     | neventsw: 0
[2025-11-25 19:43:11] 2025-11-26 00:42:39,574 | INFO     | pid: 23064
[2025-11-25 19:43:11] 2025-11-26 00:42:39,574 | INFO     | pgrp: 23064
[2025-11-25 19:43:11] 2025-11-26 00:42:39,574 | INFO     | corecount: 8
[2025-11-25 19:43:11] 2025-11-26 00:42:39,575 | INFO     | event service: False
[2025-11-25 19:43:11] 2025-11-26 00:42:39,575 | INFO     | sizes: {0: 2284144, 1: 2284343, 6: 2284605, 11: 2284633, 40233: 2328311, 40238: 2337305, 40240: 2337489, 40247: 2337735}
[2025-11-25 19:43:11] 2025-11-26 00:42:39,575 | INFO     | --------------------------------------------------
[2025-11-25 19:43:11] 2025-11-26 00:42:39,575 | INFO     | 
[2025-11-25 19:43:11] 2025-11-26 00:42:39,575 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 19:43:11] 2025-11-26 00:42:39,602 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,603 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,603 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,603 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,603 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,604 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,604 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,604 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,604 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,604 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,604 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,605 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,605 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,605 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,605 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,605 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,606 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,606 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,606 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:43:11] 2025-11-26 00:42:39,606 | INFO     | job 6895674849 has completed (purged errors)
[2025-11-25 19:43:11] 2025-11-26 00:42:39,606 | INFO     | overall cleanup function is called
[2025-11-25 19:43:11] 2025-11-26 00:42:40,621 | INFO     | --- collectZombieJob: --- 10, [23064]
[2025-11-25 19:43:11] 2025-11-26 00:42:40,623 | INFO     | zombie collector waiting for pid 23064
[2025-11-25 19:43:11] 2025-11-26 00:42:40,623 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:43:11] 2025-11-26 00:42:40,623 | INFO     | collected zombie processes
[2025-11-25 19:43:11] 2025-11-26 00:42:40,623 | INFO     | will attempt to kill all subprocesses of pid=23064
[2025-11-25 19:43:11] 2025-11-26 00:42:40,712 | INFO     | process IDs to be killed: [23064] (in reverse order)
[2025-11-25 19:43:11] 2025-11-26 00:42:40,769 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:43:11] 2025-11-26 00:42:40,770 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:43:11] 2025-11-26 00:42:40,774 | INFO     | did not find any defunct processes belonging to 23064
[2025-11-25 19:43:11] 2025-11-26 00:42:40,777 | INFO     | did not find any defunct processes belonging to 23064
[2025-11-25 19:43:11] 2025-11-26 00:42:40,780 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:43:11] 2025-11-26 00:42:40,780 | INFO     | ready for new job
[2025-11-25 19:43:11] 2025-11-26 00:42:40,780 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:43:11] 2025-11-26 00:42:40,783 | INFO     | ***************************************
[2025-11-25 19:43:11] 2025-11-26 00:42:40,783 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:43:11] 2025-11-26 00:42:40,784 | INFO     | ***************************************
[2025-11-25 19:43:11] 2025-11-26 00:42:40,784 | INFO     | 
[2025-11-25 19:43:11] 2025-11-26 00:42:40,784 | INFO     | architecture information:
[2025-11-25 19:43:11] 2025-11-26 00:42:40,785 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:43:11] 2025-11-26 00:42:40,802 | INFO     | cat /etc/os-release:
[2025-11-25 19:43:11] NAME="CentOS Linux"
[2025-11-25 19:43:11] VERSION="7 (Core)"
[2025-11-25 19:43:11] ID="centos"
[2025-11-25 19:43:11] ID_LIKE="rhel fedora"
[2025-11-25 19:43:11] VERSION_ID="7"
[2025-11-25 19:43:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:43:11] ANSI_COLOR="0;31"
[2025-11-25 19:43:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:43:11] HOME_URL="https://www.centos.org/"
[2025-11-25 19:43:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:43:11] 
[2025-11-25 19:43:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:43:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:43:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:43:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:43:11] 
[2025-11-25 19:43:11] 2025-11-26 00:42:40,803 | INFO     | ***************************************
[2025-11-25 19:43:11] 2025-11-26 00:42:41,306 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 19:43:11] 2025-11-26 00:42:41,327 | INFO     | sufficient remaining disk space (17464033280 B)
[2025-11-25 19:43:11] 2025-11-26 00:42:41,327 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:43:11] 2025-11-26 00:42:41,328 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:43:11] 2025-11-26 00:42:41,328 | INFO     | update_server=False
[2025-11-25 19:43:11] 2025-11-26 00:42:41,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:43:11] 2025-11-26 00:42:41,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:43:11] 2025-11-26 00:42:41,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:43:11] 2025-11-26 00:42:41,605 | INFO     | all data control threads have been joined
[2025-11-25 19:43:11] 2025-11-26 00:42:41,743 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 19:43:11] 2025-11-26 00:42:41,743 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 19:43:11] 2025-11-26 00:42:41,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:43:11] 2025-11-26 00:42:41,751 | INFO     | will abort loop
[2025-11-25 19:43:11] 2025-11-26 00:42:41,957 | INFO     | all payload control threads have been joined
[2025-11-25 19:43:11] 2025-11-26 00:42:42,065 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:43:11] 2025-11-26 00:42:42,331 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:42,334 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:42,608 | INFO     | [data] control thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:42,648 | INFO     | [job] validate thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:42,756 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:42,963 | INFO     | [payload] control thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:42,966 | INFO     | all job control threads have been joined
[2025-11-25 19:43:11] 2025-11-26 00:42:42,979 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:43,049 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:43,218 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:43,335 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:43,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:43:11] 2025-11-26 00:42:43,621 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:43,621 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:43,675 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:43,972 | INFO     | [job] control thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:47,406 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:51,880 | INFO     | job.realtimelogging is not enabled
[2025-11-25 19:43:11] 2025-11-26 00:42:52,883 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:43:11] 2025-11-26 00:42:53,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419876108096)>', '<ExcThread(monitor, started 140418821895936)>']
[2025-11-25 19:43:11] 2025-11-26 00:42:58,228 | INFO     | all workflow threads have been joined
[2025-11-25 19:43:11] 2025-11-26 00:42:58,235 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:43:11] 2025-11-26 00:42:58,236 | INFO     | traces error code: 0
[2025-11-25 19:43:11] 2025-11-26 00:42:58,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:43:11] 2025-11-26 00:43:10,889 | INFO     | PID=16604 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 19:43:11] 2025-11-26 00:43:10,890 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:43:11] 2025-11-26 00:43:10,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:43:11] 2025-11-26 00:43:10,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:43:11] 2025-11-26 00:43:10,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:43:11] 2025-11-26 00:43:10,891 | INFO     | [monitor] control thread has ended
[2025-11-25 19:43:11] 2025-11-26 00:43:10,990 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:43:11] 2025-11-26 00:43:10,995 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:43:11] 2025-11-26 00:43:11,000 [wrapper] pilotpid: 16604
[2025-11-25 19:43:11] 2025-11-26 00:43:11,004 [wrapper] Pilot exit status: 0
[2025-11-25 19:43:11] 2025-11-26 00:43:11,020 [wrapper] pandaids: 6895674849
[2025-11-25 19:43:11] 2025-11-26 00:43:11,060 [wrapper] cleanup supervisor_pilot   961 16605
[2025-11-25 19:43:11] 2025-11-26 00:43:11,064 [wrapper] Test setup, not cleaning
[2025-11-25 19:43:11] 2025-11-26 00:43:11,068 [wrapper] apfmon messages muted
[2025-11-25 19:43:11] 2025-11-26 00:43:11,072 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:43:11] 2025-11-26 00:43:11,076 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:43:11]  *** Error codes and diagnostics ***
[2025-11-25 19:43:11]     "exeErrorCode": 0,
[2025-11-25 19:43:11]     "exeErrorDiag": "",
[2025-11-25 19:43:11]     "pilotErrorCode": 0,
[2025-11-25 19:43:11]     "pilotErrorDiag": "",
[2025-11-25 19:43:11]  *** Listing of results directory ***
[2025-11-25 19:43:11] total 1319928
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 10:13 pilot3.tar.gz
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 10:25 queuedata.json
[2025-11-25 19:43:11] -rwx------ 1 boincer umatlas     36292 Nov 24 10:26 runpilot2-wrapper.sh
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas       100 Nov 25 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:43:11] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 08:31 run_atlas
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas       105 Nov 25 08:31 job.xml
[2025-11-25 19:43:11] -rw-r--r-- 2 boincer umatlas 408116843 Nov 25 08:31 EVNT.47483658._001366.pool.root.1
[2025-11-25 19:43:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 08:31 start_atlas.sh
[2025-11-25 19:43:11] drwxrwx--x 2 boincer umatlas      4096 Nov 25 08:31 shared
[2025-11-25 19:43:11] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 08:31 input.tar.gz
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas         0 Nov 25 08:31 boinc_lockfile
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 08:31 pandaJob.out
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas        57 Nov 25 08:31 setup.sh.local
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas    991909 Nov 25 08:31 agis_schedconf.cvmfs.json
[2025-11-25 19:43:11] drwx------ 5 boincer umatlas      4096 Nov 25 08:31 pilot3
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas       533 Nov 25 19:32 boinc_task_state.xml
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas      5912 Nov 25 19:41 init_data.xml
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas 924622915 Nov 25 19:41 HITS.47556149._003524.pool.root.1
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas      1064 Nov 25 19:42 memory_monitor_summary.json
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas   1516240 Nov 25 19:42 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas   1924715 Nov 25 19:42 log.47556149._003524.job.log.tgz.1
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas      8656 Nov 25 19:42 heartbeat.json
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 19:42 boinc_mmap_file
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas        29 Nov 25 19:42 wrapper_checkpoint.txt
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas        95 Nov 25 19:43 pilot_heartbeat.json
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas       745 Nov 25 19:43 pilotlog.txt
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas   5551026 Nov 25 19:43 log.47556149._003524.job.log.1
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas       353 Nov 25 19:43 output.list
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas       620 Nov 25 19:43 runtime_log
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas   7495680 Nov 25 19:43 result.tar.gz
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 19:43 runtime_log.err
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas       668 Nov 25 19:43 kknKDmwdnh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTjLKDm4MXPRn.diag
[2025-11-25 19:43:11] -rw-r--r-- 1 boincer umatlas     21273 Nov 25 19:43 stderr.txt
[2025-11-25 19:43:11] HITS file was successfully produced:
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas 924622915 Nov 25 19:41 shared/HITS.pool.root.1
[2025-11-25 19:43:11]  *** Contents of shared directory: ***
[2025-11-25 19:43:11] total 1309428
[2025-11-25 19:43:11] -rw-r--r-- 2 boincer umatlas 408116843 Nov 25 08:31 ATLAS.root_0
[2025-11-25 19:43:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 08:31 start_atlas.sh
[2025-11-25 19:43:11] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 08:31 input.tar.gz
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas 924622915 Nov 25 19:41 HITS.pool.root.1
[2025-11-25 19:43:11] -rw------- 1 boincer umatlas   7495680 Nov 25 19:43 result.tar.gz
19:43:13 (12830): run_atlas exited; CPU time 310730.166746
19:43:13 (12830): called boinc_finish(0)

</stderr_txt>
]]>

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