Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:01:23 (171671): wrapper (7.7.26015): starting
10:01:23 (171671): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 10:01:23] Arguments: --nthreads 8
[2025-11-25 10:01:23] Threads: 8
[2025-11-25 10:01:23] Checking for CVMFS
[2025-11-25 10:01:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:01:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:01:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:01:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:01:24] 2.13.3.0 9428 27067 329672 153285 2 114 10554262 18491392 28924 16776704 0 132574469 99.319 217078446 33410 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 10:01:24] CVMFS is ok
[2025-11-25 10:01:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:01:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:01:24] Further information can be found at the LHC@home message board.
[2025-11-25 10:01:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:01:24] Checking for apptainer binary...
[2025-11-25 10:01:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:01:24] Running /usr/bin/apptainer --version
[2025-11-25 10:01:24] apptainer version 1.4.4-1.el9
[2025-11-25 10:01:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:01:24] c-8-38.aglt2.org
[2025-11-25 10:01:24] apptainer works
[2025-11-25 10:01:24] Set ATHENA_PROC_NUMBER=8
[2025-11-25 10:01:24] Set ATHENA_CORE_NUMBER=8
[2025-11-25 10:01:24] Starting ATLAS job with PandaID=6894238109
[2025-11-25 10:01:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:29:07 (2634415): wrapper (7.7.26015): starting
00:29:07 (2634415): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 00:29:07] Arguments: --nthreads 11
[2025-11-26 00:29:07] Threads: 11
[2025-11-26 00:29:07] This job has been restarted, cleaning up previous attempt
[2025-11-26 00:29:07] Checking for CVMFS
[2025-11-26 00:29:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:29:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:29:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:29:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:29:08] 2.13.3.0 9428 27935 319896 153311 3 95 17722221 18491393 21343 16776704 0 135993225 99.331 219088674 33405 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:29:08] CVMFS is ok
[2025-11-26 00:29:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:29:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:29:08] Further information can be found at the LHC@home message board.
[2025-11-26 00:29:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:29:08] Checking for apptainer binary...
[2025-11-26 00:29:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:29:08] Running /usr/bin/apptainer --version
[2025-11-26 00:29:08] apptainer version 1.4.4-1.el9
[2025-11-26 00:29:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:29:08] c-8-38.aglt2.org
[2025-11-26 00:29:08] apptainer works
[2025-11-26 00:29:08] Set ATHENA_PROC_NUMBER=11
[2025-11-26 00:29:08] Set ATHENA_CORE_NUMBER=11
[2025-11-26 00:29:08] Starting ATLAS job with PandaID=6894238109
[2025-11-26 00:29:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:45:56 (1995676): wrapper (7.7.26015): starting
17:45:56 (1995676): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 17:45:56] Arguments: --nthreads 10
[2025-11-26 17:45:56] Threads: 10
[2025-11-26 17:45:56] This job has been restarted, cleaning up previous attempt
[2025-11-26 17:45:57] Checking for CVMFS
[2025-11-26 17:45:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:45:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:45:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:45:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:45:57] 2.13.3.0 9428 28972 338120 153337 0 563 17484576 18491392 23228 16776704 0 143175105 99.334 227948206 33314 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:45:57] CVMFS is ok
[2025-11-26 17:45:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:45:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:45:57] Further information can be found at the LHC@home message board.
[2025-11-26 17:45:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:45:57] Checking for apptainer binary...
[2025-11-26 17:45:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:45:57] Running /usr/bin/apptainer --version
[2025-11-26 17:45:57] apptainer version 1.4.4-1.el9
[2025-11-26 17:45:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:45:57] c-8-38.aglt2.org
[2025-11-26 17:45:57] apptainer works
[2025-11-26 17:45:57] Set ATHENA_PROC_NUMBER=10
[2025-11-26 17:45:57] Set ATHENA_CORE_NUMBER=10
[2025-11-26 17:45:57] Starting ATLAS job with PandaID=6894238109
[2025-11-26 17:45:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:36:48]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:36:49] 2025-11-27 18:36:01,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:36:49] 2025-11-27 18:36:02,895 | INFO     | time since job start (71395s) is within the limit (172800.0s)
[2025-11-27 13:36:49] 2025-11-27 18:36:03,837 | INFO     | monitor loop #4021: job 0:6894238109 is in state 'finished'
[2025-11-27 13:36:49] 2025-11-27 18:36:03,837 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:36:49] 2025-11-27 18:36:04,902 | INFO     | time since job start (71397s) is within the limit (172800.0s)
[2025-11-27 13:36:49] 2025-11-27 18:36:06,343 | INFO     | monitor loop #4022: job 0:6894238109 is in state 'finished'
[2025-11-27 13:36:49] 2025-11-27 18:36:06,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:36:49] 2025-11-27 18:36:06,909 | INFO     | time since job start (71399s) is within the limit (172800.0s)
[2025-11-27 13:36:49] 2025-11-27 18:36:08,850 | INFO     | monitor loop #4023: job 0:6894238109 is in state 'finished'
[2025-11-27 13:36:49] 2025-11-27 18:36:08,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:36:49] 2025-11-27 18:36:08,916 | INFO     | time since job start (71401s) is within the limit (172800.0s)
[2025-11-27 13:36:49] 2025-11-27 18:36:10,579 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 13:36:49] 2025-11-27 18:36:10,605 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2495750000007
[2025-11-27 13:36:49] 2025-11-27 18:36:10,639 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894238109/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:36:49] 2025-11-27 18:36:10,640 | INFO     | extracted standard info from prmon json
[2025-11-27 13:36:49] 2025-11-27 18:36:10,640 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:36:49] 2025-11-27 18:36:10,640 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:36:49] 2025-11-27 18:36:10,665 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:36:49] 2025-11-27 18:36:10,667 | INFO     | sum of square deviations: 496693093464.0246
[2025-11-27 13:36:49] 2025-11-27 18:36:10,814 | INFO     | sum of deviations: 2155886760884.488
[2025-11-27 13:36:49] 2025-11-27 18:36:10,814 | INFO     | mean x: 1764232851.0504274
[2025-11-27 13:36:49] 2025-11-27 18:36:10,815 | INFO     | mean y: 3273015.923931624
[2025-11-27 13:36:49] 2025-11-27 18:36:10,815 | INFO     | intersect: -7654345535.1433525
[2025-11-27 13:36:49] 2025-11-27 18:36:10,817 | INFO     | chi2: 17.03309581563772
[2025-11-27 13:36:49] 2025-11-27 18:36:10,820 | INFO     | sum of square deviations: 490354436848.2273
[2025-11-27 13:36:49] 2025-11-27 18:36:10,907 | INFO     | sum of deviations: 2626678957360.975
[2025-11-27 13:36:49] 2025-11-27 18:36:10,907 | INFO     | mean x: 1764232698.5656652
[2025-11-27 13:36:49] 2025-11-27 18:36:10,907 | INFO     | mean y: 3284338.549356223
[2025-11-27 13:36:49] 2025-11-27 18:36:10,907 | INFO     | intersect: -9447171407.290916
[2025-11-27 13:36:49] 2025-11-27 18:36:10,913 | INFO     | chi2: 13.318466466646528
[2025-11-27 13:36:49] 2025-11-27 18:36:10,913 | INFO     | current chi2=13.318466466646528 (change=21.808304193186473 %)
[2025-11-27 13:36:49] 2025-11-27 18:36:10,913 | INFO     | right removable region: 1164
[2025-11-27 13:36:49] 2025-11-27 18:36:10,915 | INFO     | sum of square deviations: 490352472429.2224
[2025-11-27 13:36:49] 2025-11-27 18:36:10,930 | INFO     | time since job start (71403s) is within the limit (172800.0s)
[2025-11-27 13:36:49] 2025-11-27 18:36:10,993 | INFO     | sum of deviations: 1821274559082.1538
[2025-11-27 13:36:49] 2025-11-27 18:36:10,994 | INFO     | mean x: 1764233003.5587983
[2025-11-27 13:36:49] 2025-11-27 18:36:10,994 | INFO     | mean y: 3281054.311587983
[2025-11-27 13:36:49] 2025-11-27 18:36:10,995 | INFO     | intersect: -6549459813.408869
[2025-11-27 13:36:49] 2025-11-27 18:36:10,998 | INFO     | chi2: 15.135969409472061
[2025-11-27 13:36:49] 2025-11-27 18:36:10,998 | INFO     | current chi2=15.135969409472061 (change=11.13788372178325 %)
[2025-11-27 13:36:49] 2025-11-27 18:36:10,998 | INFO     | left removable region: 10
[2025-11-27 13:36:49] 2025-11-27 18:36:11,000 | INFO     | sum of square deviations: 476596082564.01495
[2025-11-27 13:36:49] 2025-11-27 18:36:11,044 | INFO     | sum of deviations: 2252038725194.241
[2025-11-27 13:36:49] 2025-11-27 18:36:11,045 | INFO     | mean x: 1764232973.083189
[2025-11-27 13:36:49] 2025-11-27 18:36:11,045 | INFO     | mean y: 3297618.445407279
[2025-11-27 13:36:49] 2025-11-27 18:36:11,045 | INFO     | intersect: -8333155661.390885
[2025-11-27 13:36:49] 2025-11-27 18:36:11,047 | INFO     | chi2: 10.668196241914561
[2025-11-27 13:36:49] 2025-11-27 18:36:11,047 | INFO     | current memory leak: 4.73 B/s (using 1154 data points, chi2=10.67)
[2025-11-27 13:36:49] 2025-11-27 18:36:11,048 | INFO     | could have reported an average CPU frequency of 2600 MHz (42 samples)
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | ..............................
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | . Timing measurements:
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | . get job = 0 s
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | . initial setup = 2 s
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | . payload setup = 5 s
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | . stage-in = 0 s
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | . payload execution = 71335 s
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | . stage-out = 9 s
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | . log creation = 3 s
[2025-11-27 13:36:49] 2025-11-27 18:36:11,049 | INFO     | ..............................
[2025-11-27 13:36:49] 2025-11-27 18:36:11,170 | INFO     | 
[2025-11-27 13:36:49] 2025-11-27 18:36:11,170 | INFO     | job summary report
[2025-11-27 13:36:49] 2025-11-27 18:36:11,170 | INFO     | --------------------------------------------------
[2025-11-27 13:36:49] 2025-11-27 18:36:11,170 | INFO     | PanDA job id: 6894238109
[2025-11-27 13:36:49] 2025-11-27 18:36:11,170 | INFO     | task id: 47533962
[2025-11-27 13:36:49] 2025-11-27 18:36:11,170 | INFO     | errors: (none)
[2025-11-27 13:36:49] 2025-11-27 18:36:11,170 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | pilot state: finished 
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | transexitcode: 0
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | exeerrorcode: 0
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | exeerrordiag: 
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | exitcode: 0
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | exitmsg: OK
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | cpuconsumptiontime: 297583 s
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | nevents: 1000
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | neventsw: 0
[2025-11-27 13:36:49] 2025-11-27 18:36:11,171 | INFO     | pid: 2035927
[2025-11-27 13:36:49] 2025-11-27 18:36:11,182 | INFO     | pgrp: 2035927
[2025-11-27 13:36:49] 2025-11-27 18:36:11,182 | INFO     | corecount: 10
[2025-11-27 13:36:49] 2025-11-27 18:36:11,182 | INFO     | event service: False
[2025-11-27 13:36:49] 2025-11-27 18:36:11,182 | INFO     | sizes: {0: 2284260, 3: 2284522, 11: 2284550, 71343: 2341394, 71354: 2350388, 71356: 2350444, 71389: 2350818}
[2025-11-27 13:36:49] 2025-11-27 18:36:11,183 | INFO     | --------------------------------------------------
[2025-11-27 13:36:49] 2025-11-27 18:36:11,183 | INFO     | 
[2025-11-27 13:36:49] 2025-11-27 18:36:11,183 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 13:36:49] 2025-11-27 18:36:11,373 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,373 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,373 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,374 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,374 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,378 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,378 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,378 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,378 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,378 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,378 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,378 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,379 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,379 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,379 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,379 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,379 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,379 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:36:49] 2025-11-27 18:36:11,379 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,379 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:36:49] 2025-11-27 18:36:11,380 | INFO     | job 6894238109 has completed (purged errors)
[2025-11-27 13:36:49] 2025-11-27 18:36:11,380 | INFO     | overall cleanup function is called
[2025-11-27 13:36:49] 2025-11-27 18:36:12,506 | INFO     | --- collectZombieJob: --- 10, [2035927]
[2025-11-27 13:36:49] 2025-11-27 18:36:12,506 | INFO     | zombie collector waiting for pid 2035927
[2025-11-27 13:36:49] 2025-11-27 18:36:12,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:36:49] 2025-11-27 18:36:12,506 | INFO     | collected zombie processes
[2025-11-27 13:36:49] 2025-11-27 18:36:12,506 | INFO     | will attempt to kill all subprocesses of pid=2035927
[2025-11-27 13:36:49] 2025-11-27 18:36:14,478 | INFO     | PID=2008722 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:36:49] 2025-11-27 18:36:14,478 | INFO     | .. there are 43 such processes running
[2025-11-27 13:36:49] 2025-11-27 18:36:14,832 | INFO     | process IDs to be killed: [2035927] (in reverse order)
[2025-11-27 13:36:49] 2025-11-27 18:36:15,060 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:36:49] 2025-11-27 18:36:15,063 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:36:49] 2025-11-27 18:36:15,262 | INFO     | did not find any defunct processes belonging to 2035927
[2025-11-27 13:36:49] 2025-11-27 18:36:15,317 | INFO     | did not find any defunct processes belonging to 2035927
[2025-11-27 13:36:49] 2025-11-27 18:36:15,322 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:36:49] 2025-11-27 18:36:15,323 | INFO     | ready for new job
[2025-11-27 13:36:49] 2025-11-27 18:36:15,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:36:49] 2025-11-27 18:36:15,336 | INFO     | ***************************************
[2025-11-27 13:36:49] 2025-11-27 18:36:15,336 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:36:49] 2025-11-27 18:36:15,336 | INFO     | ***************************************
[2025-11-27 13:36:49] 2025-11-27 18:36:15,336 | INFO     | 
[2025-11-27 13:36:49] 2025-11-27 18:36:15,344 | INFO     | architecture information:
[2025-11-27 13:36:49] 2025-11-27 18:36:15,348 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:36:49] 2025-11-27 18:36:15,465 | INFO     | cat /etc/os-release:
[2025-11-27 13:36:49] NAME="CentOS Linux"
[2025-11-27 13:36:49] VERSION="7 (Core)"
[2025-11-27 13:36:49] ID="centos"
[2025-11-27 13:36:49] ID_LIKE="rhel fedora"
[2025-11-27 13:36:49] VERSION_ID="7"
[2025-11-27 13:36:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:36:49] ANSI_COLOR="0;31"
[2025-11-27 13:36:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:36:49] HOME_URL="https://www.centos.org/"
[2025-11-27 13:36:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:36:49] 
[2025-11-27 13:36:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:36:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:36:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:36:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:36:49] 
[2025-11-27 13:36:49] 2025-11-27 18:36:15,465 | INFO     | ***************************************
[2025-11-27 13:36:49] 2025-11-27 18:36:15,985 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 13:36:49] 2025-11-27 18:36:16,185 | INFO     | sufficient remaining disk space (89509593088 B)
[2025-11-27 13:36:49] 2025-11-27 18:36:16,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:36:49] 2025-11-27 18:36:16,186 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:36:49] 2025-11-27 18:36:16,186 | INFO     | update_server=False
[2025-11-27 13:36:49] 2025-11-27 18:36:16,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:36:49] 2025-11-27 18:36:16,264 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:36:49] 2025-11-27 18:36:16,283 | INFO     | all data control threads have been joined
[2025-11-27 13:36:49] 2025-11-27 18:36:16,283 | INFO     | all payload control threads have been joined
[2025-11-27 13:36:49] 2025-11-27 18:36:16,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:36:49] 2025-11-27 18:36:16,453 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 13:36:49] 2025-11-27 18:36:16,453 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 13:36:49] 2025-11-27 18:36:16,453 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:36:49] 2025-11-27 18:36:16,453 | INFO     | will abort loop
[2025-11-27 13:36:49] 2025-11-27 18:36:17,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:36:49] 2025-11-27 18:36:17,193 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:17,270 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:17,289 | INFO     | [data] control thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:17,294 | INFO     | [payload] control thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:17,394 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:17,461 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:17,490 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:17,526 | INFO     | all job control threads have been joined
[2025-11-27 13:36:49] 2025-11-27 18:36:17,791 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:17,851 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:18,180 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:18,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:18,194 | INFO     | [job] validate thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:18,502 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:18,532 | INFO     | [job] control thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:19,123 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:20,423 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:36:49] 2025-11-27 18:36:20,873 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:36:49] 2025-11-27 18:36:22,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139655952152384)>', '<ExcThread(monitor, started 139655450175232)>']
[2025-11-27 13:36:49] 2025-11-27 18:36:27,353 | INFO     | all workflow threads have been joined
[2025-11-27 13:36:49] 2025-11-27 18:36:27,353 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:36:49] 2025-11-27 18:36:27,353 | INFO     | traces error code: 0
[2025-11-27 13:36:49] 2025-11-27 18:36:27,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:36:49] 2025-11-27 18:36:47,577 | INFO     | PID=2008722 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:36:49] 2025-11-27 18:36:47,578 | INFO     | .. there are 43 such processes running
[2025-11-27 13:36:49] 2025-11-27 18:36:47,579 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:36:49] 2025-11-27 18:36:47,579 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:36:49] 2025-11-27 18:36:47,579 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:36:49] 2025-11-27 18:36:47,579 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:36:49] 2025-11-27 18:36:47,579 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 13:36:49] 2025-11-27 18:36:47,579 | INFO     | [monitor] control thread has ended
[2025-11-27 13:36:49] 2025-11-27 18:36:47,813 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:36:49] 2025-11-27 18:36:47,843 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:36:49] 2025-11-27 18:36:47,910 [wrapper] pilotpid: 2008722
[2025-11-27 13:36:49] 2025-11-27 18:36:47,933 [wrapper] Pilot exit status: 0
[2025-11-27 13:36:49] 2025-11-27 18:36:48,019 [wrapper] pandaids: 6894238109 6894238109 6894238109
[2025-11-27 13:36:49] 2025-11-27 18:36:48,220 [wrapper] cleanup supervisor_pilot 1277137 2008723
[2025-11-27 13:36:49] 2025-11-27 18:36:48,225 [wrapper] Test setup, not cleaning
[2025-11-27 13:36:49] 2025-11-27 18:36:48,227 [wrapper] apfmon messages muted
[2025-11-27 13:36:49] 2025-11-27 18:36:48,230 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:36:49] 2025-11-27 18:36:48,233 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:36:49]  *** Error codes and diagnostics ***
[2025-11-27 13:36:49]     "exeErrorCode": 0,
[2025-11-27 13:36:49]     "exeErrorDiag": "",
[2025-11-27 13:36:49]     "pilotErrorCode": 0,
[2025-11-27 13:36:49]     "pilotErrorDiag": "",
[2025-11-27 13:36:49]  *** Listing of results directory ***
[2025-11-27 13:36:49] total 1721764
[2025-11-27 13:36:49] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 22:19 pilot3.tar.gz
[2025-11-27 13:36:49] -rwx------. 1 boincer umatlas     36292 Nov 23 22:31 runpilot2-wrapper.sh
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 22:31 queuedata.json
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas       100 Nov 25 10:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:36:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 10:01 run_atlas
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas       105 Nov 25 10:01 job.xml
[2025-11-27 13:36:49] -rw-r--r--. 3 boincer umatlas 409689909 Nov 25 10:01 EVNT.47493127._001003.pool.root.1
[2025-11-27 13:36:49] -rw-r--r--. 3 boincer umatlas 409689909 Nov 25 10:01 ATLAS.root_0
[2025-11-27 13:36:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:01 start_atlas.sh
[2025-11-27 13:36:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 10:01 shared
[2025-11-27 13:36:49] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 10:01 input.tar.gz
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas         0 Nov 25 10:01 boinc_lockfile
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 17:45 pandaJob.out
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas        57 Nov 26 17:45 setup.sh.local
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas    991546 Nov 26 17:46 agis_schedconf.cvmfs.json
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas       534 Nov 27 13:06 boinc_task_state.xml
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas 917543211 Nov 27 13:33 HITS.47533962._000023.pool.root.1
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas      1068 Nov 27 13:35 memory_monitor_summary.json
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas   2457529 Nov 27 13:35 log.47533962._000023.job.log.tgz.1
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas      8635 Nov 27 13:36 heartbeat.json
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas      6663 Nov 27 13:36 init_data.xml
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas        96 Nov 27 13:36 pilot_heartbeat.json
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas       893 Nov 27 13:36 pilotlog.txt
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas   8662570 Nov 27 13:36 log.47533962._000023.job.log.1
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:36 boinc_mmap_file
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas        30 Nov 27 13:36 wrapper_checkpoint.txt
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas       353 Nov 27 13:36 output.list
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:36 runtime_log
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas  11141120 Nov 27 13:36 result.tar.gz
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas      9420 Nov 27 13:36 runtime_log.err
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas       912 Nov 27 13:36 737KDmPTch8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLOLKDmWFNKyn.diag
[2025-11-27 13:36:49] -rw-r--r--. 1 boincer umatlas     26119 Nov 27 13:36 stderr.txt
[2025-11-27 13:36:49] HITS file was successfully produced:
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas 917543211 Nov 27 13:33 shared/HITS.pool.root.1
[2025-11-27 13:36:49]  *** Contents of shared directory: ***
[2025-11-27 13:36:49] total 1307612
[2025-11-27 13:36:49] -rw-r--r--. 3 boincer umatlas 409689909 Nov 25 10:01 ATLAS.root_0
[2025-11-27 13:36:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:01 start_atlas.sh
[2025-11-27 13:36:49] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 10:01 input.tar.gz
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas 917543211 Nov 27 13:33 HITS.pool.root.1
[2025-11-27 13:36:49] -rw-------. 1 boincer umatlas  11141120 Nov 27 13:36 result.tar.gz
13:36:50 (1995676): run_atlas exited; CPU time 299807.728245
13:36:50 (1995676): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN