Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
10:23:07 (149704): wrapper (7.7.26015): starting
10:23:07 (149704): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 10:23:07] Arguments: --nthreads 12
[2025-11-25 10:23:07] Threads: 12
[2025-11-25 10:23:07] Checking for CVMFS
[2025-11-25 10:23:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:23:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:23:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:23:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:23:08] 2.13.2.0 3658817 599 62564 153289 1 49 12092497 16777216 1038 130560 0 818370 99.992 25070 1303 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-25 10:23:08] CVMFS is ok
[2025-11-25 10:23:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:23:08] Checking for apptainer binary...
[2025-11-25 10:23:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:23:08] Running /usr/bin/apptainer --version
[2025-11-25 10:23:08] apptainer version 1.3.0-bp160.1.36
[2025-11-25 10:23:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:23:08] boinc-runner
[2025-11-25 10:23:08] apptainer works
[2025-11-25 10:23:08] Set ATHENA_PROC_NUMBER=12
[2025-11-25 10:23:08] Set ATHENA_CORE_NUMBER=12
[2025-11-25 10:23:08] Starting ATLAS job with PandaID=6893836063
[2025-11-25 10:23:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:21:30]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:21:30] 2025-11-25 19:08:59,287 | INFO     | time since job start (9943s) is within the limit (172800.0s)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,079 | INFO     | monitor loop #756: job 0:6893836063 is in state 'finished'
[2025-11-25 13:21:30] 2025-11-25 19:09:00,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,107 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 13:21:30] 2025-11-25 19:09:00,109 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4284.768500000001
[2025-11-25 13:21:30] 2025-11-25 19:09:00,111 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6893836063/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,112 | INFO     | extracted standard info from prmon json
[2025-11-25 13:21:30] 2025-11-25 19:09:00,112 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:21:30] 2025-11-25 19:09:00,112 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:21:30] 2025-11-25 19:09:00,113 | INFO     | fitting pss+swap vs Time
[2025-11-25 13:21:30] 2025-11-25 19:09:00,113 | INFO     | sum of square deviations: 1342841922.0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,113 | INFO     | sum of deviations: 52392087419.000015
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | mean x: 1764092755.0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | mean y: 3501663.319018405
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | intersect: -68824035160.62039
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | chi2: 3.3551721453166694
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | sum of square deviations: 1223016419.5
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | sum of deviations: 92842575931.5
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | mean x: 1764092602.5
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | mean y: 3552581.4873417723
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | intersect: -133913620390.534
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | chi2: 1.6238981353073463
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | current chi2=1.6238981353073463 (change=51.600154478688346 %)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,114 | INFO     | sum of square deviations: 1110539892.0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,115 | INFO     | sum of deviations: 86493865054.0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,115 | INFO     | mean x: 1764092450.0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,115 | INFO     | mean y: 3543975.163398693
[2025-11-25 13:21:30] 2025-11-25 19:09:00,115 | INFO     | intersect: -137391947544.09149
[2025-11-25 13:21:30] 2025-11-25 19:09:00,115 | INFO     | chi2: 1.6250984877091041
[2025-11-25 13:21:30] 2025-11-25 19:09:00,115 | INFO     | current chi2=1.6250984877091041 (change=-0.0739179617033479 %)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,115 | INFO     | right removable region: 152
[2025-11-25 13:21:30] 2025-11-25 19:09:00,115 | INFO     | sum of square deviations: 1223016419.5
[2025-11-25 13:21:30] 2025-11-25 19:09:00,115 | INFO     | sum of deviations: 13430003908.499985
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | mean x: 1764092907.5
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | mean y: 3550626.905063291
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | intersect: -19368041009.099216
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | chi2: 1.789421191101186
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | current chi2=1.789421191101186 (change=46.66678448678239 %)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | sum of square deviations: 1110539892.0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | sum of deviations: 7557854066.999998
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | mean x: 1764093060.0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | mean y: 3558569.9869281044
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | intersect: -12002095620.49529
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | chi2: 1.7838380774269662
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | current chi2=1.7838380774269662 (change=0.31200668137745335 %)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,116 | INFO     | left removable region: 20
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | sum of square deviations: 713140813.0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | sum of deviations: 30792679952.0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | mean x: 1764093029.5
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | mean y: 3625108.3484848486
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | intersect: -76168080496.9337
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | chi2: 0.005442820818069857
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | current memory leak: 43.18 B/s (using 132 data points, chi2=0.01)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | could have reported an average CPU frequency of 4024 MHz (9 samples)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | ..............................
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | . Timing measurements:
[2025-11-25 13:21:30] 2025-11-25 19:09:00,117 | INFO     | . get job = 0 s
[2025-11-25 13:21:30] 2025-11-25 19:09:00,118 | INFO     | . initial setup = 2 s
[2025-11-25 13:21:30] 2025-11-25 19:09:00,118 | INFO     | . payload setup = 2 s
[2025-11-25 13:21:30] 2025-11-25 19:09:00,118 | INFO     | . stage-in = 0 s
[2025-11-25 13:21:30] 2025-11-25 19:09:00,118 | INFO     | . payload execution = 9917 s
[2025-11-25 13:21:30] 2025-11-25 19:09:00,118 | INFO     | . stage-out = 0 s
[2025-11-25 13:21:30] 2025-11-25 19:09:00,118 | INFO     | . log creation = 0 s
[2025-11-25 13:21:30] 2025-11-25 19:09:00,118 | INFO     | ..............................
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | 
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | job summary report
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | --------------------------------------------------
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | PanDA job id: 6893836063
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | task id: 47523449
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | errors: (none)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | pilot state: finished 
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | transexitcode: 0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | exeerrorcode: 0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | exeerrordiag: 
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | exitcode: 0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | exitmsg: OK
[2025-11-25 13:21:30] 2025-11-25 19:09:00,154 | INFO     | cpuconsumptiontime: 114647 s
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | nevents: 1000
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | neventsw: 0
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | pid: 160832
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | pgrp: 160832
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | corecount: 12
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | event service: False
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | sizes: {0: 2284311, 2: 2284573, 11: 2284601, 9924: 2314281, 9926: 2323275, 9927: 2323331, 9931: 2323769}
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | --------------------------------------------------
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | 
[2025-11-25 13:21:30] 2025-11-25 19:09:00,155 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-25 13:21:30] 2025-11-25 19:09:00,166 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,167 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:21:30] 2025-11-25 19:09:00,168 | INFO     | job 6893836063 has completed (purged errors)
[2025-11-25 13:21:30] 2025-11-25 19:09:00,168 | INFO     | overall cleanup function is called
[2025-11-25 13:21:30] 2025-11-25 19:09:01,183 | INFO     | --- collectZombieJob: --- 10, [160832]
[2025-11-25 13:21:30] 2025-11-25 19:09:01,183 | INFO     | zombie collector waiting for pid 160832
[2025-11-25 13:21:30] 2025-11-25 19:09:01,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:21:30] 2025-11-25 19:09:01,183 | INFO     | collected zombie processes
[2025-11-25 13:21:30] 2025-11-25 19:09:01,183 | INFO     | will attempt to kill all subprocesses of pid=160832
[2025-11-25 13:21:30] 2025-11-25 19:09:01,254 | INFO     | process IDs to be killed: [160832] (in reverse order)
[2025-11-25 13:21:30] 2025-11-25 19:09:01,290 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:21:30] 2025-11-25 19:09:01,290 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:21:30] 2025-11-25 19:09:01,293 | INFO     | did not find any defunct processes belonging to 160832
[2025-11-25 13:21:30] 2025-11-25 19:09:01,296 | INFO     | did not find any defunct processes belonging to 160832
[2025-11-25 13:21:30] 2025-11-25 19:09:01,296 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:21:30] 2025-11-25 19:09:01,297 | INFO     | ready for new job
[2025-11-25 13:21:30] 2025-11-25 19:09:01,297 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:21:30] 2025-11-25 19:09:01,298 | INFO     | ***************************************
[2025-11-25 13:21:30] 2025-11-25 19:09:01,298 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:21:30] 2025-11-25 19:09:01,298 | INFO     | ***************************************
[2025-11-25 13:21:30] 2025-11-25 19:09:01,298 | INFO     | 
[2025-11-25 13:21:30] 2025-11-25 19:09:01,299 | INFO     | architecture information:
[2025-11-25 13:21:30] 2025-11-25 19:09:01,300 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:21:30] 2025-11-25 19:09:01,311 | INFO     | cat /etc/os-release:
[2025-11-25 13:21:30] NAME="CentOS Linux"
[2025-11-25 13:21:30] VERSION="7 (Core)"
[2025-11-25 13:21:30] ID="centos"
[2025-11-25 13:21:30] ID_LIKE="rhel fedora"
[2025-11-25 13:21:30] VERSION_ID="7"
[2025-11-25 13:21:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:21:30] ANSI_COLOR="0;31"
[2025-11-25 13:21:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:21:30] HOME_URL="https://www.centos.org/"
[2025-11-25 13:21:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:21:30] 
[2025-11-25 13:21:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:21:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:21:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:21:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:21:30] 
[2025-11-25 13:21:30] 2025-11-25 19:09:01,311 | INFO     | ***************************************
[2025-11-25 13:21:30] 2025-11-25 19:09:01,813 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-25 13:21:30] 2025-11-25 19:09:01,821 | INFO     | sufficient remaining disk space (3849998827520 B)
[2025-11-25 13:21:30] 2025-11-25 19:09:01,821 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:21:30] 2025-11-25 19:09:01,821 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:21:30] 2025-11-25 19:09:01,821 | INFO     | update_server=False
[2025-11-25 13:21:30] 2025-11-25 19:09:01,821 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:21:30] 2025-11-25 19:09:01,821 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:21:30] 2025-11-25 19:09:01,821 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:21:30] 2025-11-25 19:09:01,821 | INFO     | aborting loop
[2025-11-25 13:21:30] 2025-11-25 19:09:02,460 | INFO     | all data control threads have been joined
[2025-11-25 13:21:30] 2025-11-25 19:09:02,464 | INFO     | all job control threads have been joined
[2025-11-25 13:21:30] 2025-11-25 19:09:02,480 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:21:30] 2025-11-25 19:09:02,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:21:30] 2025-11-25 19:09:02,826 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:02,826 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:02,826 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:03,054 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:03,229 | INFO     | all payload control threads have been joined
[2025-11-25 13:21:30] 2025-11-25 19:09:03,259 | INFO     | [job] validate thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:03,373 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:03,465 | INFO     | [data] control thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:03,469 | INFO     | [job] control thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:03,486 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:03,698 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:03,921 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:03,962 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:04,182 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:04,234 | INFO     | [payload] control thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:04,684 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:06,485 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:21:30] 2025-11-25 19:09:32,434 | INFO     | PID=153945 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 13:21:30] 2025-11-25 19:09:32,434 | INFO     | .. there are 2 such processes running
[2025-11-25 13:21:30] 2025-11-25 19:09:32,435 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:21:30] 2025-11-25 19:09:32,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:21:30] 2025-11-25 19:09:32,435 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:21:30] 2025-11-25 19:09:32,777 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:21:30] 2025-11-25 19:09:34,438 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139952308459328)>', '<ExcThread(monitor, started 139951802918656)>']
[2025-11-25 13:21:30] 2025-11-25 19:09:34,445 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:21:30] 2025-11-25 19:09:34,445 | INFO     | [monitor] control thread has ended
[2025-11-25 13:21:30] 2025-11-25 19:09:39,463 | INFO     | all workflow threads have been joined
[2025-11-25 13:21:30] 2025-11-25 19:09:39,463 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:21:30] 2025-11-25 19:09:39,463 | INFO     | traces error code: 0
[2025-11-25 13:21:30] 2025-11-25 19:09:39,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:21:30] 2025-11-25 19:09:39,527 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:21:30] 2025-11-25 19:09:39,529 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:21:30] 2025-11-25 19:09:39,531 [wrapper] pilotpid: 153945
[2025-11-25 13:21:30] 2025-11-25 19:09:39,532 [wrapper] Pilot exit status: 0
[2025-11-25 13:21:30] 2025-11-25 19:09:39,537 [wrapper] pandaids: 6893836063
[2025-11-25 13:21:30] 2025-11-25 19:09:39,555 [wrapper] cleanup supervisor_pilot  336364 153946
[2025-11-25 13:21:30] 2025-11-25 19:09:39,556 [wrapper] Test setup, not cleaning
[2025-11-25 13:21:30] 2025-11-25 19:09:39,557 [wrapper] apfmon messages muted
[2025-11-25 13:21:30] 2025-11-25 19:09:39,559 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:21:30] 2025-11-25 19:09:39,560 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:21:30]  *** Error codes and diagnostics ***
[2025-11-25 13:21:30]     "exeErrorCode": 0,
[2025-11-25 13:21:30]     "exeErrorDiag": "",
[2025-11-25 13:21:30]     "pilotErrorCode": 0,
[2025-11-25 13:21:30]     "pilotErrorDiag": "",
[2025-11-25 13:21:30]  *** Listing of results directory ***
[2025-11-25 13:21:30] total 1303052
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc    576529 Nov 20 04:06 pilot3.tar.gz
[2025-11-25 13:21:30] -rwx------. 1 boinc boinc     36292 Nov 20 04:14 runpilot2-wrapper.sh
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc      5112 Nov 20 04:15 queuedata.json
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc       100 Nov 25 10:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:21:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 10:23 run_atlas
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc       105 Nov 25 10:23 job.xml
[2025-11-25 13:21:30] -rw-r--r--. 2 boinc boinc     15847 Nov 25 10:23 start_atlas.sh
[2025-11-25 13:21:30] drwxrwx--x. 1 boinc boinc        76 Nov 25 10:23 shared
[2025-11-25 13:21:30] -rw-r--r--. 2 boinc boinc    590101 Nov 25 10:23 input.tar.gz
[2025-11-25 13:21:30] -rw-r--r--. 2 boinc boinc 407822086 Nov 25 10:23 EVNT.47493127._000097.pool.root.1
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc         0 Nov 25 10:23 boinc_setup_complete
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc     10032 Nov 25 10:23 init_data.xml
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc         0 Nov 25 10:23 boinc_lockfile
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc      2784 Nov 25 10:23 pandaJob.out
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc        63 Nov 25 10:23 setup.sh.local
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc    991543 Nov 25 10:23 agis_schedconf.cvmfs.json
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc   1516240 Nov 25 10:23 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:21:30] drwx------. 1 boinc boinc       414 Nov 25 10:23 pilot3
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc       531 Nov 25 13:04 boinc_task_state.xml
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc 915777070 Nov 25 13:08 HITS.47523449._000964.pool.root.1
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc      1040 Nov 25 13:08 memory_monitor_summary.json
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc   1942061 Nov 25 13:08 log.47523449._000964.job.log.tgz.1
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc      8593 Nov 25 13:09 heartbeat.json
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc        95 Nov 25 13:09 pilot_heartbeat.json
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc      4824 Nov 25 13:09 pilotlog.txt
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc   1465342 Nov 25 13:09 log.47523449._000964.job.log.1
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc       353 Nov 25 13:09 output.list
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc       620 Nov 25 13:09 runtime_log
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc   3430400 Nov 25 13:09 result.tar.gz
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc      9396 Nov 25 13:09 runtime_log.err
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc       658 Nov 25 13:09 qVZLDmsrGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwIGKDmKuaq8m.diag
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc        28 Nov 25 13:21 wrapper_checkpoint.txt
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc      8192 Nov 25 13:21 boinc_mmap_file
[2025-11-25 13:21:30] -rw-r--r--. 1 boinc boinc     20926 Nov 25 13:21 stderr.txt
[2025-11-25 13:21:30] HITS file was successfully produced:
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc 915777070 Nov 25 13:08 shared/HITS.pool.root.1
[2025-11-25 13:21:30]  *** Contents of shared directory: ***
[2025-11-25 13:21:30] total 1296528
[2025-11-25 13:21:30] -rw-r--r--. 2 boinc boinc     15847 Nov 25 10:23 start_atlas.sh
[2025-11-25 13:21:30] -rw-r--r--. 2 boinc boinc    590101 Nov 25 10:23 input.tar.gz
[2025-11-25 13:21:30] -rw-r--r--. 2 boinc boinc 407822086 Nov 25 10:23 ATLAS.root_0
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc 915777070 Nov 25 13:08 HITS.pool.root.1
[2025-11-25 13:21:30] -rw-------. 1 boinc boinc   3430400 Nov 25 13:09 result.tar.gz
13:21:32 (149704): run_atlas exited; CPU time 114512.191408
13:21:32 (149704): called boinc_finish(0)

</stderr_txt>
]]>

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