Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:12:12 (105495): wrapper (7.7.26015): starting
13:12:12 (105495): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:12:12] Arguments: --nthreads 8
[2025-11-25 13:12:12] Threads: 8
[2025-11-25 13:12:12] Checking for CVMFS
[2025-11-25 13:12:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:12:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:12:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:12:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:12:12] 2.13.2.0 6491 35407 227268 153292 2 286 33432199 40960000 31233 16776704 0 148040855 99.580 148856890 40199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 13:12:12] CVMFS is ok
[2025-11-25 13:12:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:12:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:12:12] Further information can be found at the LHC@home message board.
[2025-11-25 13:12:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:12:12] Checking for apptainer binary...
[2025-11-25 13:12:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:12:12] Running /usr/bin/apptainer --version
[2025-11-25 13:12:12] apptainer version 1.4.4-1.el9
[2025-11-25 13:12:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:12:12] c-212-20.aglt2.org
[2025-11-25 13:12:12] apptainer works
[2025-11-25 13:12:12] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:12:12] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:12:13] Starting ATLAS job with PandaID=6895375911
[2025-11-25 13:12:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:52:59]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:52:59] 2025-11-27 01:52:14,959 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:52:59] 2025-11-27 01:52:14,959 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:52:59] 2025-11-27 01:52:14,985 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:52:59] 2025-11-27 01:52:14,990 | INFO     | sum of square deviations: 2021227875600.0935
[2025-11-26 20:52:59] 2025-11-27 01:52:15,061 | INFO     | sum of deviations: 8075809234689.079
[2025-11-26 20:52:59] 2025-11-27 01:52:15,061 | INFO     | mean x: 1764151341.2312634
[2025-11-26 20:52:59] 2025-11-27 01:52:15,062 | INFO     | mean y: 2871250.316916488
[2025-11-26 20:52:59] 2025-11-27 01:52:15,062 | INFO     | intersect: -7045789548.839491
[2025-11-26 20:52:59] 2025-11-27 01:52:15,063 | INFO     | chi2: 10.284317760059432
[2025-11-26 20:52:59] 2025-11-27 01:52:15,065 | INFO     | sum of square deviations: 2005042084040.0696
[2025-11-26 20:52:59] 2025-11-27 01:52:15,138 | INFO     | sum of deviations: 8758660293713.957
[2025-11-26 20:52:59] 2025-11-27 01:52:15,138 | INFO     | mean x: 1764151188.73591
[2025-11-26 20:52:59] 2025-11-27 01:52:15,138 | INFO     | mean y: 2877683.5507246377
[2025-11-26 20:52:59] 2025-11-27 01:52:15,139 | INFO     | intersect: -7703494712.26214
[2025-11-26 20:52:59] 2025-11-27 01:52:15,140 | INFO     | chi2: 6.588581514958445
[2025-11-26 20:52:59] 2025-11-27 01:52:15,140 | INFO     | current chi2=6.588581514958445 (change=35.93564815212039 %)
[2025-11-26 20:52:59] 2025-11-27 01:52:15,142 | INFO     | sum of square deviations: 1988942945267.4573
[2025-11-26 20:52:59] 2025-11-27 01:52:15,215 | INFO     | sum of deviations: 9167208621982.773
[2025-11-26 20:52:59] 2025-11-27 01:52:15,215 | INFO     | mean x: 1764151036.2405813
[2025-11-26 20:52:59] 2025-11-27 01:52:15,215 | INFO     | mean y: 2881551.671689989
[2025-11-26 20:52:59] 2025-11-27 01:52:15,215 | INFO     | intersect: -8128241881.700489
[2025-11-26 20:52:59] 2025-11-27 01:52:15,217 | INFO     | chi2: 4.931700535146162
[2025-11-26 20:52:59] 2025-11-27 01:52:15,217 | INFO     | current chi2=4.931700535146162 (change=25.14776475104039 %)
[2025-11-26 20:52:59] 2025-11-27 01:52:15,219 | INFO     | sum of square deviations: 1972930226719.7705
[2025-11-26 20:52:59] 2025-11-27 01:52:15,363 | INFO     | sum of deviations: 9337005761838.062
[2025-11-26 20:52:59] 2025-11-27 01:52:15,363 | INFO     | mean x: 1764150883.745278
[2025-11-26 20:52:59] 2025-11-27 01:52:15,363 | INFO     | mean y: 2883167.6103615756
[2025-11-26 20:52:59] 2025-11-27 01:52:15,363 | INFO     | intersect: -8346062346.630062
[2025-11-26 20:52:59] 2025-11-27 01:52:15,364 | INFO     | chi2: 4.511219067410482
[2025-11-26 20:52:59] 2025-11-27 01:52:15,364 | INFO     | current chi2=4.511219067410482 (change=8.526094898485521 %)
[2025-11-26 20:52:59] 2025-11-27 01:52:15,364 | INFO     | right removable region: 1852
[2025-11-26 20:52:59] 2025-11-27 01:52:15,370 | INFO     | sum of square deviations: 2005040111300.0674
[2025-11-26 20:52:59] 2025-11-27 01:52:15,564 | INFO     | sum of deviations: 7421248527379.543
[2025-11-26 20:52:59] 2025-11-27 01:52:15,565 | INFO     | mean x: 1764151493.73591
[2025-11-26 20:52:59] 2025-11-27 01:52:15,565 | INFO     | mean y: 2877415.287707998
[2025-11-26 20:52:59] 2025-11-27 01:52:15,565 | INFO     | intersect: -6526770845.201734
[2025-11-26 20:52:59] 2025-11-27 01:52:15,566 | INFO     | chi2: 7.091742656782342
[2025-11-26 20:52:59] 2025-11-27 01:52:15,566 | INFO     | current chi2=7.091742656782342 (change=31.04313944553421 %)
[2025-11-26 20:52:59] 2025-11-27 01:52:15,572 | INFO     | sum of square deviations: 1988939113188.9414
[2025-11-26 20:52:59] 2025-11-27 01:52:15,651 | INFO     | sum of deviations: 7061272179798.281
[2025-11-26 20:52:59] 2025-11-27 01:52:15,651 | INFO     | mean x: 1764151646.2400432
[2025-11-26 20:52:59] 2025-11-27 01:52:15,652 | INFO     | mean y: 2880823.5958019374
[2025-11-26 20:52:59] 2025-11-27 01:52:15,652 | INFO     | intersect: -6260335007.364014
[2025-11-26 20:52:59] 2025-11-27 01:52:15,653 | INFO     | chi2: 6.211730571339771
[2025-11-26 20:52:59] 2025-11-27 01:52:15,653 | INFO     | current chi2=6.211730571339771 (change=12.408968120141138 %)
[2025-11-26 20:52:59] 2025-11-27 01:52:15,653 | INFO     | left removable region: 20
[2025-11-26 20:52:59] 2025-11-27 01:52:15,655 | INFO     | sum of square deviations: 1906608839775.9072
[2025-11-26 20:52:59] 2025-11-27 01:52:15,755 | INFO     | sum of deviations: 8066211648891.518
[2025-11-26 20:52:59] 2025-11-27 01:52:15,756 | INFO     | mean x: 1764151463.257096
[2025-11-26 20:52:59] 2025-11-27 01:52:15,756 | INFO     | mean y: 2895381.8247816595
[2025-11-26 20:52:59] 2025-11-27 01:52:15,756 | INFO     | intersect: -7460627699.818922
[2025-11-26 20:52:59] 2025-11-27 01:52:15,761 | INFO     | chi2: 0.33297714707939
[2025-11-26 20:52:59] 2025-11-27 01:52:15,762 | INFO     | current memory leak: 4.23 B/s (using 1832 data points, chi2=0.33)
[2025-11-26 20:52:59] 2025-11-27 01:52:15,763 | INFO     | could have reported an average CPU frequency of 3209 MHz (66 samples)
[2025-11-26 20:52:59] 2025-11-27 01:52:15,763 | INFO     | ..............................
[2025-11-26 20:52:59] 2025-11-27 01:52:15,764 | INFO     | . Timing measurements:
[2025-11-26 20:52:59] 2025-11-27 01:52:15,764 | INFO     | . get job = 0 s
[2025-11-26 20:52:59] 2025-11-27 01:52:15,764 | INFO     | . initial setup = 3 s
[2025-11-26 20:52:59] 2025-11-27 01:52:15,764 | INFO     | . payload setup = 13 s
[2025-11-26 20:52:59] 2025-11-27 01:52:15,768 | INFO     | . stage-in = 0 s
[2025-11-26 20:52:59] 2025-11-27 01:52:15,768 | INFO     | . payload execution = 113925 s
[2025-11-26 20:52:59] 2025-11-27 01:52:15,768 | INFO     | . stage-out = 5 s
[2025-11-26 20:52:59] 2025-11-27 01:52:15,768 | INFO     | . log creation = 1 s
[2025-11-26 20:52:59] 2025-11-27 01:52:15,768 | INFO     | ..............................
[2025-11-26 20:52:59] 2025-11-27 01:52:16,043 | INFO     | 
[2025-11-26 20:52:59] 2025-11-27 01:52:16,043 | INFO     | job summary report
[2025-11-26 20:52:59] 2025-11-27 01:52:16,043 | INFO     | --------------------------------------------------
[2025-11-26 20:52:59] 2025-11-27 01:52:16,043 | INFO     | PanDA job id: 6895375911
[2025-11-26 20:52:59] 2025-11-27 01:52:16,043 | INFO     | task id: 47556137
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | errors: (none)
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | pilot state: finished 
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | transexitcode: 0
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | exeerrorcode: 0
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | exeerrordiag: 
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | exitcode: 0
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | exitmsg: OK
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | cpuconsumptiontime: 206688 s
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | nevents: 1000
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | neventsw: 0
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | pid: 120807
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | pgrp: 120807
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | corecount: 8
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | event service: False
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | sizes: {0: 2284314, 11: 2284604, 113942: 2361652, 113943: 2361651, 113948: 2370785, 113962: 2370975}
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | --------------------------------------------------
[2025-11-26 20:52:59] 2025-11-27 01:52:16,044 | INFO     | 
[2025-11-26 20:52:59] 2025-11-27 01:52:16,045 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 20:52:59] 2025-11-27 01:52:16,078 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,079 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:52:59] 2025-11-27 01:52:16,080 | INFO     | job 6895375911 has completed (purged errors)
[2025-11-26 20:52:59] 2025-11-27 01:52:16,081 | INFO     | overall cleanup function is called
[2025-11-26 20:52:59] 2025-11-27 01:52:17,098 | INFO     | --- collectZombieJob: --- 10, [120807]
[2025-11-26 20:52:59] 2025-11-27 01:52:17,098 | INFO     | zombie collector waiting for pid 120807
[2025-11-26 20:52:59] 2025-11-27 01:52:17,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:52:59] 2025-11-27 01:52:17,098 | INFO     | collected zombie processes
[2025-11-26 20:52:59] 2025-11-27 01:52:17,098 | INFO     | will attempt to kill all subprocesses of pid=120807
[2025-11-26 20:52:59] 2025-11-27 01:52:17,609 | INFO     | process IDs to be killed: [120807] (in reverse order)
[2025-11-26 20:52:59] 2025-11-27 01:52:17,802 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:52:59] 2025-11-27 01:52:17,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:52:59] 2025-11-27 01:52:17,822 | INFO     | did not find any defunct processes belonging to 120807
[2025-11-26 20:52:59] 2025-11-27 01:52:17,840 | INFO     | did not find any defunct processes belonging to 120807
[2025-11-26 20:52:59] 2025-11-27 01:52:17,841 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:52:59] 2025-11-27 01:52:17,841 | INFO     | ready for new job
[2025-11-26 20:52:59] 2025-11-27 01:52:17,841 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:52:59] 2025-11-27 01:52:17,846 | INFO     | ***************************************
[2025-11-26 20:52:59] 2025-11-27 01:52:17,846 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:52:59] 2025-11-27 01:52:17,847 | INFO     | ***************************************
[2025-11-26 20:52:59] 2025-11-27 01:52:17,847 | INFO     | 
[2025-11-26 20:52:59] 2025-11-27 01:52:17,851 | INFO     | architecture information:
[2025-11-26 20:52:59] 2025-11-27 01:52:17,852 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:52:59] 2025-11-27 01:52:17,874 | INFO     | cat /etc/os-release:
[2025-11-26 20:52:59] NAME="CentOS Linux"
[2025-11-26 20:52:59] VERSION="7 (Core)"
[2025-11-26 20:52:59] ID="centos"
[2025-11-26 20:52:59] ID_LIKE="rhel fedora"
[2025-11-26 20:52:59] VERSION_ID="7"
[2025-11-26 20:52:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:52:59] ANSI_COLOR="0;31"
[2025-11-26 20:52:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:52:59] HOME_URL="https://www.centos.org/"
[2025-11-26 20:52:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:52:59] 
[2025-11-26 20:52:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:52:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:52:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:52:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:52:59] 
[2025-11-26 20:52:59] 2025-11-27 01:52:17,874 | INFO     | ***************************************
[2025-11-26 20:52:59] 2025-11-27 01:52:18,377 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 20:52:59] 2025-11-27 01:52:18,404 | INFO     | sufficient remaining disk space (122606845952 B)
[2025-11-26 20:52:59] 2025-11-27 01:52:18,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:52:59] 2025-11-27 01:52:18,405 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:52:59] 2025-11-27 01:52:18,405 | INFO     | update_server=False
[2025-11-26 20:52:59] 2025-11-27 01:52:18,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:52:59] 2025-11-27 01:52:18,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:52:59] 2025-11-27 01:52:18,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:52:59] 2025-11-27 01:52:18,405 | INFO     | aborting loop
[2025-11-26 20:52:59] 2025-11-27 01:52:18,570 | INFO     | all job control threads have been joined
[2025-11-26 20:52:59] 2025-11-27 01:52:19,257 | INFO     | all data control threads have been joined
[2025-11-26 20:52:59] 2025-11-27 01:52:19,424 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:19,429 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:19,493 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:19,578 | INFO     | [job] control thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:19,678 | INFO     | all payload control threads have been joined
[2025-11-26 20:52:59] 2025-11-27 01:52:19,726 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:19,950 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:20,073 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:20,121 | INFO     | [job] validate thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:20,248 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:20,263 | INFO     | [data] control thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:20,299 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:20,430 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:20,683 | INFO     | [payload] control thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:20,815 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:20,872 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:52:59] 2025-11-27 01:52:21,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:52:59] 2025-11-27 01:52:21,878 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:25,570 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:52:59] 2025-11-27 01:52:48,510 | INFO     | PID=109829 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:52:59] 2025-11-27 01:52:48,510 | INFO     | .. there are 29 such processes running
[2025-11-26 20:52:59] 2025-11-27 01:52:48,510 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:52:59] 2025-11-27 01:52:48,510 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:52:59] 2025-11-27 01:52:48,510 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:52:59] 2025-11-27 01:52:53,105 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:52:59] 2025-11-27 01:52:54,073 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140494427617088)>', '<ExcThread(monitor, started 140493933500160)>']
[2025-11-26 20:52:59] 2025-11-27 01:52:54,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:52:59] 2025-11-27 01:52:54,548 | INFO     | [monitor] control thread has ended
[2025-11-26 20:52:59] 2025-11-27 01:52:59,100 | INFO     | all workflow threads have been joined
[2025-11-26 20:52:59] 2025-11-27 01:52:59,100 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:52:59] 2025-11-27 01:52:59,100 | INFO     | traces error code: 0
[2025-11-26 20:52:59] 2025-11-27 01:52:59,101 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:52:59] 2025-11-27 01:52:59,308 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:52:59] 2025-11-27 01:52:59,347 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:52:59] 2025-11-27 01:52:59,371 [wrapper] pilotpid: 109829
[2025-11-26 20:52:59] 2025-11-27 01:52:59,391 [wrapper] Pilot exit status: 0
[2025-11-26 20:52:59] 2025-11-27 01:52:59,433 [wrapper] pandaids: 6895375911
[2025-11-26 20:52:59] 2025-11-27 01:52:59,622 [wrapper] cleanup supervisor_pilot  818670 109830
[2025-11-26 20:52:59] 2025-11-27 01:52:59,627 [wrapper] Test setup, not cleaning
[2025-11-26 20:52:59] 2025-11-27 01:52:59,631 [wrapper] apfmon messages muted
[2025-11-26 20:52:59] 2025-11-27 01:52:59,634 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:52:59] 2025-11-27 01:52:59,653 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:52:59]  *** Error codes and diagnostics ***
[2025-11-26 20:52:59]     "exeErrorCode": 0,
[2025-11-26 20:52:59]     "exeErrorDiag": "",
[2025-11-26 20:52:59]     "pilotErrorCode": 0,
[2025-11-26 20:52:59]     "pilotErrorDiag": "",
[2025-11-26 20:52:59]  *** Listing of results directory ***
[2025-11-26 20:52:59] total 1343200
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 19:08 pilot3.tar.gz
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 19:21 queuedata.json
[2025-11-26 20:52:59] -rwx------. 1 boincer umatlas     36292 Nov 23 19:23 runpilot2-wrapper.sh
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas       100 Nov 25 13:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:52:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 13:12 run_atlas
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas       105 Nov 25 13:12 job.xml
[2025-11-26 20:52:59] -rw-r--r--. 2 boincer umatlas 411229397 Nov 25 13:12 EVNT.47483658._000962.pool.root.1
[2025-11-26 20:52:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:12 start_atlas.sh
[2025-11-26 20:52:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 13:12 shared
[2025-11-26 20:52:59] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 13:12 input.tar.gz
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas         0 Nov 25 13:12 boinc_lockfile
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 13:12 pandaJob.out
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas        57 Nov 25 13:12 setup.sh.local
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas    991543 Nov 25 13:12 agis_schedconf.cvmfs.json
[2025-11-26 20:52:59] drwx------. 5 boincer umatlas      4096 Nov 25 13:12 pilot3
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas       534 Nov 26 20:35 boinc_task_state.xml
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 20:48 init_data.xml
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas 925880135 Nov 26 20:51 HITS.47556137._009482.pool.root.1
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas      1075 Nov 26 20:51 memory_monitor_summary.json
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas        95 Nov 26 20:51 pilot_heartbeat.json
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:51 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas   2791188 Nov 26 20:52 log.47556137._009482.job.log.tgz.1
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas      8639 Nov 26 20:52 heartbeat.json
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas      4824 Nov 26 20:52 pilotlog.txt
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:52 boinc_mmap_file
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:52 wrapper_checkpoint.txt
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas  14412574 Nov 26 20:52 log.47556137._009482.job.log.1
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas       353 Nov 26 20:52 output.list
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:52 runtime_log
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas  17223680 Nov 26 20:52 result.tar.gz
[2025-11-26 20:52:59] -rw-------. 1 boincer umatlas       668 Nov 26 20:52 OZiMDmvXZh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPJLKDmtt1w6m.diag
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas      9344 Nov 26 20:52 runtime_log.err
[2025-11-26 20:52:59] -rw-r--r--. 1 boincer umatlas     21091 Nov 26 20:52 stderr.txt
[2025-11-26 20:53:00] HITS file was successfully produced:
[2025-11-26 20:53:00] -rw-------. 1 boincer umatlas 925880135 Nov 26 20:51 shared/HITS.pool.root.1
[2025-11-26 20:53:00]  *** Contents of shared directory: ***
[2025-11-26 20:53:00] total 1323196
[2025-11-26 20:53:00] -rw-r--r--. 2 boincer umatlas 411229397 Nov 25 13:12 ATLAS.root_0
[2025-11-26 20:53:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:12 start_atlas.sh
[2025-11-26 20:53:00] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 13:12 input.tar.gz
[2025-11-26 20:53:00] -rw-------. 1 boincer umatlas 925880135 Nov 26 20:51 HITS.pool.root.1
[2025-11-26 20:53:00] -rw-------. 1 boincer umatlas  17223680 Nov 26 20:52 result.tar.gz
20:53:01 (105495): run_atlas exited; CPU time 208242.451691
20:53:01 (105495): called boinc_finish(0)

</stderr_txt>
]]>

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