Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:45:55 (619473): wrapper (7.7.26015): starting
13:45:55 (619473): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 13:45:55] Arguments: --nthreads 3
[2025-11-25 13:45:55] Threads: 3
[2025-11-25 13:45:55] Checking for CVMFS
[2025-11-25 13:45:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:45:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:45:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:45:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:45:56] 2.9.2.0 411005 44 57972 153283 3 88 35178417 36864001 0 130560 0 626005 100.000 2660 9851 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 13:45:56] CVMFS is ok
[2025-11-25 13:45:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:45:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:45:56] Further information can be found at the LHC@home message board.
[2025-11-25 13:45:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:45:56] Checking for apptainer binary...
[2025-11-25 13:45:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:45:56] Running /usr/bin/apptainer --version
[2025-11-25 13:45:56] apptainer version 1.4.1-1.1
[2025-11-25 13:45:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:45:56] thA335
[2025-11-25 13:45:56] apptainer works
[2025-11-25 13:45:56] Set ATHENA_PROC_NUMBER=3
[2025-11-25 13:45:56] Set ATHENA_CORE_NUMBER=3
[2025-11-25 13:45:56] Starting ATLAS job with PandaID=6895379472
[2025-11-25 13:45:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:50:14]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:50:14] 2025-11-25 12:49:22,562 | INFO     | update_server=False
[2025-11-25 13:50:14] 2025-11-25 12:49:22,562 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:50:14] 2025-11-25 12:49:22,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:50:14] 2025-11-25 12:49:22,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:50:14] 2025-11-25 12:49:22,831 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 13:50:14] 2025-11-25 12:49:22,832 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 13:50:14] 2025-11-25 12:49:22,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:50:14] 2025-11-25 12:49:22,833 | INFO     | will abort loop
[2025-11-25 13:50:14] 2025-11-25 12:49:23,111 | INFO     | all data control threads have been joined
[2025-11-25 13:50:14] 2025-11-25 12:49:23,436 | INFO     | all payload control threads have been joined
[2025-11-25 13:50:14] 2025-11-25 12:49:23,566 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:23,567 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:23,835 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:23,839 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:24,010 | INFO     | all job control threads have been joined
[2025-11-25 13:50:14] 2025-11-25 12:49:24,044 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:24,117 | INFO     | [data] control thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:24,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:24,418 | INFO     | [job] validate thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:24,439 | INFO     | [payload] control thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:24,440 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:24,499 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:24,563 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:24,568 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:25,008 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:25,016 | INFO     | [job] control thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:25,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:50:14] 2025-11-25 12:49:29,118 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:50:14] 2025-11-25 12:49:52,676 | INFO     | PID=623209 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 13:50:14] 2025-11-25 12:49:52,676 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:50:14] 2025-11-25 12:49:52,676 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:50:14] 2025-11-25 12:49:52,676 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:50:14] 2025-11-25 12:50:07,751 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:50:14] 2025-11-25 12:50:08,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510617593664)>', '<ExcThread(monitor, started 140509838300928)>']
[2025-11-25 13:50:14] 2025-11-25 12:50:09,756 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:50:14] 2025-11-25 12:50:09,757 | INFO     | [monitor] control thread has ended
[2025-11-25 13:50:14] 2025-11-25 12:50:13,985 | INFO     | all workflow threads have been joined
[2025-11-25 13:50:14] 2025-11-25 12:50:13,985 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:50:14] 2025-11-25 12:50:13,986 | INFO     | traces error code: 0
[2025-11-25 13:50:14] 2025-11-25 12:50:13,986 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:50:14] 2025-11-25 12:50:14,032 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:50:14] 2025-11-25 12:50:14,035 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:50:14] 2025-11-25 12:50:14,038 [wrapper] pilotpid: 623209
[2025-11-25 13:50:14] 2025-11-25 12:50:14,040 [wrapper] Pilot exit status: 0
[2025-11-25 13:50:14] 2025-11-25 12:50:14,048 [wrapper] pandaids: 6895379472
[2025-11-25 13:50:14] 2025-11-25 12:50:14,066 [wrapper] cleanup supervisor_pilot  623215 623210
[2025-11-25 13:50:14] 2025-11-25 12:50:14,069 [wrapper] Test setup, not cleaning
[2025-11-25 13:50:14] 2025-11-25 12:50:14,072 [wrapper] apfmon messages muted
[2025-11-25 13:50:14] 2025-11-25 12:50:14,075 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:50:14] 2025-11-25 12:50:14,078 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:50:14]  *** Error codes and diagnostics ***
[2025-11-25 13:50:14]     "exeErrorCode": 65,
[2025-11-25 13:50:14]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 13:50:14]     "pilotErrorCode": 1305,
[2025-11-25 13:50:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 13:50:14]  *** Listing of results directory ***
[2025-11-25 13:50:14] total 404132
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc    576529 Nov 24 03:14 pilot3.tar.gz
[2025-11-25 13:50:14] -rwx------ 1 boinc boinc     36292 Nov 24 03:18 runpilot2-wrapper.sh
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc      5112 Nov 24 03:18 queuedata.json
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc       100 Nov 25 13:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:50:14] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 13:45 run_atlas
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc       105 Nov 25 13:45 job.xml
[2025-11-25 13:50:14] -rw-r--r-- 2 boinc boinc 409630873 Nov 25 13:45 EVNT.47483658._001210.pool.root.1
[2025-11-25 13:50:14] -rw-r--r-- 2 boinc boinc    590101 Nov 25 13:45 input.tar.gz
[2025-11-25 13:50:14] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:45 start_atlas.sh
[2025-11-25 13:50:14] drwxrwx--x 2 boinc boinc      4096 Nov 25 13:45 shared
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:45 boinc_setup_complete
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc      6196 Nov 25 13:45 init_data.xml
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:45 boinc_lockfile
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc      2785 Nov 25 13:45 pandaJob.out
[2025-11-25 13:50:14] -rw------- 1 boinc boinc    991909 Nov 25 13:46 agis_schedconf.cvmfs.json
[2025-11-25 13:50:14] -rw------- 1 boinc boinc   1516240 Nov 25 13:46 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:50:14] drwx------ 5 boinc boinc      4096 Nov 25 13:46 pilot3
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc       522 Nov 25 13:47 boinc_task_state.xml
[2025-11-25 13:50:14] -rw------- 1 boinc boinc       971 Nov 25 13:47 memory_monitor_summary.json
[2025-11-25 13:50:14] -rw------- 1 boinc boinc     56168 Nov 25 13:47 log.47556149._001964.job.log.tgz.1
[2025-11-25 13:50:14] -rw------- 1 boinc boinc        95 Nov 25 13:49 pilot_heartbeat.json
[2025-11-25 13:50:14] -rw------- 1 boinc boinc      8410 Nov 25 13:49 heartbeat.json
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc      8192 Nov 25 13:50 boinc_mmap_file
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc        22 Nov 25 13:50 wrapper_checkpoint.txt
[2025-11-25 13:50:14] -rw------- 1 boinc boinc      4937 Nov 25 13:50 pilotlog.txt
[2025-11-25 13:50:14] -rw------- 1 boinc boinc     93651 Nov 25 13:50 log.47556149._001964.job.log.1
[2025-11-25 13:50:14] -rw------- 1 boinc boinc       186 Nov 25 13:50 output.list
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc       620 Nov 25 13:50 runtime_log
[2025-11-25 13:50:14] -rw------- 1 boinc boinc    174080 Nov 25 13:50 result.tar.gz
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc      8744 Nov 25 13:50 runtime_log.err
[2025-11-25 13:50:14] -rw------- 1 boinc boinc       649 Nov 25 13:50 d7PODmuKbh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmULLKDmuzkhxm.diag
[2025-11-25 13:50:14] -rw-r--r-- 1 boinc boinc      8012 Nov 25 13:50 stderr.txt
[2025-11-25 13:50:14] No HITS result produced
[2025-11-25 13:50:14]  *** Contents of shared directory: ***
[2025-11-25 13:50:14] total 400804
[2025-11-25 13:50:14] -rw-r--r-- 2 boinc boinc 409630873 Nov 25 13:45 ATLAS.root_0
[2025-11-25 13:50:14] -rw-r--r-- 2 boinc boinc    590101 Nov 25 13:45 input.tar.gz
[2025-11-25 13:50:14] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:45 start_atlas.sh
[2025-11-25 13:50:14] -rw------- 1 boinc boinc    174080 Nov 25 13:50 result.tar.gz
13:50:15 (619473): run_atlas exited; CPU time 31.758991
13:50:15 (619473): called boinc_finish(0)

</stderr_txt>
]]>

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