Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:12:57 (744326): wrapper (7.7.26015): starting
14:12:57 (744326): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 14:12:57] Arguments: --nthreads 3
[2025-11-25 14:12:57] Threads: 3
[2025-11-25 14:12:57] Checking for CVMFS
[2025-11-25 14:12:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:12:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:12:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:12:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:12:58] 2.9.2.0 411005 71 59648 153283 0 88 35184993 36864001 0 130560 0 1001624 100.000 2663 9476 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 14:12:58] CVMFS is ok
[2025-11-25 14:12:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 14:12:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 14:12:58] Further information can be found at the LHC@home message board.
[2025-11-25 14:12:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:12:58] Checking for apptainer binary...
[2025-11-25 14:12:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:12:58] Running /usr/bin/apptainer --version
[2025-11-25 14:12:58] apptainer version 1.4.1-1.1
[2025-11-25 14:12:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:12:58] thA335
[2025-11-25 14:12:58] apptainer works
[2025-11-25 14:12:58] Set ATHENA_PROC_NUMBER=3
[2025-11-25 14:12:58] Set ATHENA_CORE_NUMBER=3
[2025-11-25 14:12:58] Starting ATLAS job with PandaID=6895674375
[2025-11-25 14:12:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:17:17]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:17:17] 2025-11-25 13:16:29,273 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 14:17:17] 2025-11-25 13:16:29,273 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 14:17:17] 2025-11-25 13:16:29,273 | INFO     | update_server=False
[2025-11-25 14:17:17] 2025-11-25 13:16:29,273 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:17:17] 2025-11-25 13:16:29,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:17:17] 2025-11-25 13:16:29,273 | INFO     | aborting loop
[2025-11-25 14:17:17] 2025-11-25 13:16:29,787 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:17:17] 2025-11-25 13:16:29,883 | INFO     | all job control threads have been joined
[2025-11-25 14:17:17] 2025-11-25 13:16:30,018 | INFO     | all data control threads have been joined
[2025-11-25 14:17:17] 2025-11-25 13:16:30,278 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:30,279 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:30,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:30,348 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:30,465 | INFO     | all payload control threads have been joined
[2025-11-25 14:17:17] 2025-11-25 13:16:30,700 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:30,889 | INFO     | [job] control thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:31,024 | INFO     | [data] control thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:31,324 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:31,395 | INFO     | [job] validate thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:31,472 | INFO     | [payload] control thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:31,477 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:31,546 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:31,623 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:31,794 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:32,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:17:17] 2025-11-25 13:16:32,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:17:17] 2025-11-25 13:16:33,128 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:36,070 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:17:17] 2025-11-25 13:16:59,016 | INFO     | PID=748055 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 14:17:17] 2025-11-25 13:16:59,016 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:17:17] 2025-11-25 13:16:59,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:17:17] 2025-11-25 13:16:59,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:17:17] 2025-11-25 13:17:10,066 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:17:17] 2025-11-25 13:17:11,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139856242390848)>', '<ExcThread(monitor, started 139855568807680)>']
[2025-11-25 14:17:17] 2025-11-25 13:17:12,085 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:17:17] 2025-11-25 13:17:12,086 | INFO     | [monitor] control thread has ended
[2025-11-25 14:17:17] 2025-11-25 13:17:16,963 | INFO     | all workflow threads have been joined
[2025-11-25 14:17:17] 2025-11-25 13:17:16,964 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:17:17] 2025-11-25 13:17:16,964 | INFO     | traces error code: 0
[2025-11-25 14:17:17] 2025-11-25 13:17:16,965 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:17:17] 2025-11-25 13:17:17,015 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:17:17] 2025-11-25 13:17:17,018 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:17:17] 2025-11-25 13:17:17,021 [wrapper] pilotpid: 748055
[2025-11-25 14:17:17] 2025-11-25 13:17:17,024 [wrapper] Pilot exit status: 0
[2025-11-25 14:17:17] 2025-11-25 13:17:17,031 [wrapper] pandaids: 6895674375
[2025-11-25 14:17:17] 2025-11-25 13:17:17,047 [wrapper] cleanup supervisor_pilot  748061 748056
[2025-11-25 14:17:17] 2025-11-25 13:17:17,050 [wrapper] Test setup, not cleaning
[2025-11-25 14:17:17] 2025-11-25 13:17:17,053 [wrapper] apfmon messages muted
[2025-11-25 14:17:17] 2025-11-25 13:17:17,055 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:17:17] 2025-11-25 13:17:17,058 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:17:17]  *** Error codes and diagnostics ***
[2025-11-25 14:17:17]     "exeErrorCode": 65,
[2025-11-25 14:17:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 14:17:17]     "pilotErrorCode": 1305,
[2025-11-25 14:17:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 14:17:17]  *** Listing of results directory ***
[2025-11-25 14:17:17] total 402536
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc    576529 Nov 24 14:08 pilot3.tar.gz
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc      5112 Nov 24 14:41 queuedata.json
[2025-11-25 14:17:17] -rwx------ 1 boinc boinc     36292 Nov 24 14:43 runpilot2-wrapper.sh
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc       100 Nov 25 14:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:17:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 14:12 run_atlas
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc       105 Nov 25 14:12 job.xml
[2025-11-25 14:17:17] -rw-r--r-- 2 boinc boinc 408001779 Nov 25 14:12 EVNT.47483658._002047.pool.root.1
[2025-11-25 14:17:17] drwxrwx--x 2 boinc boinc      4096 Nov 25 14:12 shared
[2025-11-25 14:17:17] -rw-r--r-- 2 boinc boinc    590100 Nov 25 14:12 input.tar.gz
[2025-11-25 14:17:17] -rw-r--r-- 2 boinc boinc     15847 Nov 25 14:12 start_atlas.sh
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc         0 Nov 25 14:12 boinc_setup_complete
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc      6196 Nov 25 14:12 init_data.xml
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc         0 Nov 25 14:12 boinc_lockfile
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc      2785 Nov 25 14:12 pandaJob.out
[2025-11-25 14:17:17] -rw------- 1 boinc boinc    991909 Nov 25 14:13 agis_schedconf.cvmfs.json
[2025-11-25 14:17:17] -rw------- 1 boinc boinc   1516240 Nov 25 14:13 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:17:17] drwx------ 5 boinc boinc      4096 Nov 25 14:13 pilot3
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc       522 Nov 25 14:14 boinc_task_state.xml
[2025-11-25 14:17:17] -rw------- 1 boinc boinc       939 Nov 25 14:14 memory_monitor_summary.json
[2025-11-25 14:17:17] -rw------- 1 boinc boinc     55726 Nov 25 14:14 log.47556161._000310.job.log.tgz.1
[2025-11-25 14:17:17] -rw------- 1 boinc boinc        95 Nov 25 14:16 pilot_heartbeat.json
[2025-11-25 14:17:17] -rw------- 1 boinc boinc      8401 Nov 25 14:16 heartbeat.json
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc      8192 Nov 25 14:17 boinc_mmap_file
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc        22 Nov 25 14:17 wrapper_checkpoint.txt
[2025-11-25 14:17:17] -rw------- 1 boinc boinc      4751 Nov 25 14:17 pilotlog.txt
[2025-11-25 14:17:17] -rw------- 1 boinc boinc     93703 Nov 25 14:17 log.47556161._000310.job.log.1
[2025-11-25 14:17:17] -rw------- 1 boinc boinc       186 Nov 25 14:17 output.list
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc       620 Nov 25 14:17 runtime_log
[2025-11-25 14:17:17] -rw------- 1 boinc boinc    174080 Nov 25 14:17 result.tar.gz
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc      8744 Nov 25 14:17 runtime_log.err
[2025-11-25 14:17:17] -rw------- 1 boinc boinc       649 Nov 25 14:17 FZSMDmr1lh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJiLKDmYH50nm.diag
[2025-11-25 14:17:17] -rw-r--r-- 1 boinc boinc      8012 Nov 25 14:17 stderr.txt
[2025-11-25 14:17:17] No HITS result produced
[2025-11-25 14:17:17]  *** Contents of shared directory: ***
[2025-11-25 14:17:17] total 399212
[2025-11-25 14:17:17] -rw-r--r-- 2 boinc boinc 408001779 Nov 25 14:12 ATLAS.root_0
[2025-11-25 14:17:17] -rw-r--r-- 2 boinc boinc    590100 Nov 25 14:12 input.tar.gz
[2025-11-25 14:17:17] -rw-r--r-- 2 boinc boinc     15847 Nov 25 14:12 start_atlas.sh
[2025-11-25 14:17:17] -rw------- 1 boinc boinc    174080 Nov 25 14:17 result.tar.gz
14:17:18 (744326): run_atlas exited; CPU time 32.333598
14:17:18 (744326): called boinc_finish(0)

</stderr_txt>
]]>

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