Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:28:21 (536226): wrapper (7.7.26015): starting
13:28:21 (536226): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 13:28:21] Arguments: --nthreads 3
[2025-11-25 13:28:21] Threads: 3
[2025-11-25 13:28:21] Checking for CVMFS
[2025-11-25 13:28:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:28:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:28:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:28:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:28:21] 2.9.2.0 411005 27 52972 153281 0 88 35171650 36864001 0 130560 0 375619 100.000 4 37 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 13:28:21] CVMFS is ok
[2025-11-25 13:28:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:28:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:28:21] Further information can be found at the LHC@home message board.
[2025-11-25 13:28:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:28:21] Checking for apptainer binary...
[2025-11-25 13:28:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:28:21] Running /usr/bin/apptainer --version
[2025-11-25 13:28:22] apptainer version 1.4.1-1.1
[2025-11-25 13:28:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:28:22] thA335
[2025-11-25 13:28:22] apptainer works
[2025-11-25 13:28:22] Set ATHENA_PROC_NUMBER=3
[2025-11-25 13:28:22] Set ATHENA_CORE_NUMBER=3
[2025-11-25 13:28:22] Starting ATLAS job with PandaID=6895674370
[2025-11-25 13:28:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:32:40]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:32:40] 2025-11-25 12:31:47,894 | INFO     | sufficient remaining disk space (826862993408 B)
[2025-11-25 13:32:40] 2025-11-25 12:31:47,894 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:32:40] 2025-11-25 12:31:47,894 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:32:40] 2025-11-25 12:31:47,894 | INFO     | update_server=False
[2025-11-25 13:32:40] 2025-11-25 12:31:47,894 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:32:40] 2025-11-25 12:31:47,895 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:32:40] 2025-11-25 12:31:47,895 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:32:40] 2025-11-25 12:31:47,895 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 13:32:40] 2025-11-25 12:31:47,895 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:32:40] 2025-11-25 12:31:47,895 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:32:40] 2025-11-25 12:31:47,895 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:32:40] 2025-11-25 12:31:47,895 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:32:40] 2025-11-25 12:31:48,161 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:32:40] 2025-11-25 12:31:48,161 | INFO     | aborting loop
[2025-11-25 13:32:40] 2025-11-25 12:31:48,703 | INFO     | all payload control threads have been joined
[2025-11-25 13:32:40] 2025-11-25 12:31:48,764 | INFO     | all data control threads have been joined
[2025-11-25 13:32:40] 2025-11-25 12:31:48,900 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:48,901 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,028 | INFO     | all job control threads have been joined
[2025-11-25 13:32:40] 2025-11-25 12:31:49,037 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,167 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,191 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,198 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,656 | INFO     | [job] validate thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,709 | INFO     | [payload] control thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,714 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,748 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,769 | INFO     | [data] control thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,806 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:49,901 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:50,034 | INFO     | [job] control thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:31:51,902 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:32:40] 2025-11-25 12:32:34,303 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:32:40] 2025-11-25 12:32:35,417 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239633618752)>', '<ExcThread(monitor, started 140238835922688)>']
[2025-11-25 13:32:40] 2025-11-25 12:32:36,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:32:40] 2025-11-25 12:32:36,150 | INFO     | [monitor] control thread has ended
[2025-11-25 13:32:40] 2025-11-25 12:32:40,443 | INFO     | all workflow threads have been joined
[2025-11-25 13:32:40] 2025-11-25 12:32:40,443 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:32:40] 2025-11-25 12:32:40,443 | INFO     | traces error code: 0
[2025-11-25 13:32:40] 2025-11-25 12:32:40,443 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:32:40] 2025-11-25 12:32:40,490 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:32:40] 2025-11-25 12:32:40,493 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:32:40] 2025-11-25 12:32:40,496 [wrapper] pilotpid: 539963
[2025-11-25 13:32:40] 2025-11-25 12:32:40,498 [wrapper] Pilot exit status: 0
[2025-11-25 13:32:40] 2025-11-25 12:32:40,505 [wrapper] pandaids: 6895674370
[2025-11-25 13:32:40] 2025-11-25 12:32:40,522 [wrapper] cleanup supervisor_pilot  539969 539964
[2025-11-25 13:32:40] 2025-11-25 12:32:40,525 [wrapper] Test setup, not cleaning
[2025-11-25 13:32:40] 2025-11-25 12:32:40,527 [wrapper] apfmon messages muted
[2025-11-25 13:32:40] 2025-11-25 12:32:40,530 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:32:40] 2025-11-25 12:32:40,533 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:32:40]  *** Error codes and diagnostics ***
[2025-11-25 13:32:40]     "exeErrorCode": 65,
[2025-11-25 13:32:40]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 13:32:40]     "pilotErrorCode": 1305,
[2025-11-25 13:32:40]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 13:32:40]  *** Listing of results directory ***
[2025-11-25 13:32:40] total 402524
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc    576529 Nov 24 14:08 pilot3.tar.gz
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc      5112 Nov 24 14:41 queuedata.json
[2025-11-25 13:32:40] -rwx------ 1 boinc boinc     36292 Nov 24 14:45 runpilot2-wrapper.sh
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc       100 Nov 25 13:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:32:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 13:28 run_atlas
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc       105 Nov 25 13:28 job.xml
[2025-11-25 13:32:40] -rw-r--r-- 2 boinc boinc 408001779 Nov 25 13:28 EVNT.47483658._002047.pool.root.1
[2025-11-25 13:32:40] -rw-r--r-- 2 boinc boinc    590098 Nov 25 13:28 input.tar.gz
[2025-11-25 13:32:40] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:28 start_atlas.sh
[2025-11-25 13:32:40] drwxrwx--x 2 boinc boinc      4096 Nov 25 13:28 shared
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:28 boinc_setup_complete
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc      6196 Nov 25 13:28 init_data.xml
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:28 boinc_lockfile
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc      2784 Nov 25 13:28 pandaJob.out
[2025-11-25 13:32:40] -rw------- 1 boinc boinc    991894 Nov 25 13:28 agis_schedconf.cvmfs.json
[2025-11-25 13:32:40] -rw------- 1 boinc boinc   1516240 Nov 25 13:28 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:32:40] drwx------ 5 boinc boinc      4096 Nov 25 13:28 pilot3
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc       523 Nov 25 13:29 boinc_task_state.xml
[2025-11-25 13:32:40] -rw------- 1 boinc boinc       954 Nov 25 13:29 memory_monitor_summary.json
[2025-11-25 13:32:40] -rw------- 1 boinc boinc     56061 Nov 25 13:29 log.47556161._000305.job.log.tgz.1
[2025-11-25 13:32:40] -rw------- 1 boinc boinc        95 Nov 25 13:31 pilot_heartbeat.json
[2025-11-25 13:32:40] -rw------- 1 boinc boinc      8401 Nov 25 13:31 heartbeat.json
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc      8192 Nov 25 13:32 boinc_mmap_file
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc        23 Nov 25 13:32 wrapper_checkpoint.txt
[2025-11-25 13:32:40] -rw------- 1 boinc boinc      4556 Nov 25 13:32 pilotlog.txt
[2025-11-25 13:32:40] -rw------- 1 boinc boinc     92988 Nov 25 13:32 log.47556161._000305.job.log.1
[2025-11-25 13:32:40] -rw------- 1 boinc boinc       186 Nov 25 13:32 output.list
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc       620 Nov 25 13:32 runtime_log
[2025-11-25 13:32:40] -rw------- 1 boinc boinc    163840 Nov 25 13:32 result.tar.gz
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc      8744 Nov 25 13:32 runtime_log.err
[2025-11-25 13:32:40] -rw------- 1 boinc boinc       649 Nov 25 13:32 0PxKDmq3lh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNiLKDmObLVSo.diag
[2025-11-25 13:32:40] -rw-r--r-- 1 boinc boinc      8036 Nov 25 13:32 stderr.txt
[2025-11-25 13:32:40] No HITS result produced
[2025-11-25 13:32:40]  *** Contents of shared directory: ***
[2025-11-25 13:32:40] total 399200
[2025-11-25 13:32:40] -rw-r--r-- 2 boinc boinc 408001779 Nov 25 13:28 ATLAS.root_0
[2025-11-25 13:32:40] -rw-r--r-- 2 boinc boinc    590098 Nov 25 13:28 input.tar.gz
[2025-11-25 13:32:40] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:28 start_atlas.sh
[2025-11-25 13:32:40] -rw------- 1 boinc boinc    163840 Nov 25 13:32 result.tar.gz
13:32:42 (536226): run_atlas exited; CPU time 31.315593
13:32:42 (536226): called boinc_finish(0)

</stderr_txt>
]]>

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