Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
05:33:43 (2981034): wrapper (7.7.26015): starting
05:33:43 (2981034): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 05:33:43] Arguments: --nthreads 4
[2025-11-25 05:33:43] Threads: 4
[2025-11-25 05:33:43] Checking for CVMFS
[2025-11-25 05:33:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:33:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:33:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:33:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:33:43] 2.13.2.0 439692 2658 59688 153281 2 90 4007969 4096000 4786 130560 0 7587245 99.844 1028495 1015 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 05:33:43] CVMFS is ok
[2025-11-25 05:33:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:33:43] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 05:33:43] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 05:33:43] Further information can be found at the LHC@home message board.
[2025-11-25 05:33:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:33:43] Checking for apptainer binary...
[2025-11-25 05:33:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:33:43] Running /usr/bin/apptainer --version
[2025-11-25 05:33:43] apptainer version 1.4.3
[2025-11-25 05:33:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:33:43] b650riptide
[2025-11-25 05:33:43] apptainer works
[2025-11-25 05:33:43] Set ATHENA_PROC_NUMBER=4
[2025-11-25 05:33:43] Set ATHENA_CORE_NUMBER=4
[2025-11-25 05:33:43] Starting ATLAS job with PandaID=6895375670
[2025-11-25 05:33:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:51:51]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:51:51] 2025-11-25 19:51:17,663 | INFO     | executing command: lscpu
[2025-11-25 12:51:51] 2025-11-25 19:51:17,682 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 12:51:51] 2025-11-25 19:51:17,801 | INFO     | time since job start (26247s) is within the limit (172800.0s)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,565 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 12:51:51] 2025-11-25 19:51:19,567 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4589.67596875
[2025-11-25 12:51:51] 2025-11-25 19:51:19,570 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6895375670/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,571 | INFO     | extracted standard info from prmon json
[2025-11-25 12:51:51] 2025-11-25 19:51:19,571 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:51:51] 2025-11-25 19:51:19,571 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:51:51] 2025-11-25 19:51:19,574 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:51:51] 2025-11-25 19:51:19,574 | INFO     | sum of square deviations: 24653662247.5
[2025-11-25 12:51:51] 2025-11-25 19:51:19,576 | INFO     | sum of deviations: 169895350113.99997
[2025-11-25 12:51:51] 2025-11-25 19:51:19,576 | INFO     | mean x: 1764087132.5
[2025-11-25 12:51:51] 2025-11-25 19:51:19,576 | INFO     | mean y: 2246584.827906977
[2025-11-25 12:51:51] 2025-11-25 19:51:19,576 | INFO     | intersect: -12154576121.627472
[2025-11-25 12:51:51] 2025-11-25 19:51:19,577 | INFO     | chi2: 3.0150218972418172
[2025-11-25 12:51:51] 2025-11-25 19:51:19,577 | INFO     | sum of square deviations: 23803609100.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,579 | INFO     | sum of deviations: 218160602398.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,579 | INFO     | mean x: 1764086980.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,579 | INFO     | mean y: 2255186.905882353
[2025-11-25 12:51:51] 2025-11-25 19:51:19,579 | INFO     | intersect: -16165640892.318027
[2025-11-25 12:51:51] 2025-11-25 19:51:19,579 | INFO     | chi2: 1.7164229103704791
[2025-11-25 12:51:51] 2025-11-25 19:51:19,579 | INFO     | current chi2=1.7164229103704791 (change=43.070963698781554 %)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,579 | INFO     | sum of square deviations: 22973323765.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,581 | INFO     | sum of deviations: 213844416064.99994
[2025-11-25 12:51:51] 2025-11-25 19:51:19,581 | INFO     | mean x: 1764086827.5
[2025-11-25 12:51:51] 2025-11-25 19:51:19,582 | INFO     | mean y: 2254394.123809524
[2025-11-25 12:51:51] 2025-11-25 19:51:19,582 | INFO     | intersect: -16418535273.648315
[2025-11-25 12:51:51] 2025-11-25 19:51:19,582 | INFO     | chi2: 1.71541836164563
[2025-11-25 12:51:51] 2025-11-25 19:51:19,582 | INFO     | current chi2=1.71541836164563 (change=0.05852571174503221 %)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,582 | INFO     | right removable region: 419
[2025-11-25 12:51:51] 2025-11-25 19:51:19,582 | INFO     | sum of square deviations: 23803609100.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,584 | INFO     | sum of deviations: 100127218776.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,584 | INFO     | mean x: 1764087285.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,584 | INFO     | mean y: 2259043.971764706
[2025-11-25 12:51:51] 2025-11-25 19:51:19,584 | INFO     | intersect: -7418176772.42529
[2025-11-25 12:51:51] 2025-11-25 19:51:19,584 | INFO     | chi2: 1.356417624908303
[2025-11-25 12:51:51] 2025-11-25 19:51:19,584 | INFO     | current chi2=1.356417624908303 (change=55.011350791542434 %)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,585 | INFO     | sum of square deviations: 22973323765.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,587 | INFO     | sum of deviations: 88765524024.99997
[2025-11-25 12:51:51] 2025-11-25 19:51:19,587 | INFO     | mean x: 1764087437.5
[2025-11-25 12:51:51] 2025-11-25 19:51:19,587 | INFO     | mean y: 2261129.657142857
[2025-11-25 12:51:51] 2025-11-25 19:51:19,587 | INFO     | intersect: -6813911724.449973
[2025-11-25 12:51:51] 2025-11-25 19:51:19,587 | INFO     | chi2: 1.343673437606185
[2025-11-25 12:51:51] 2025-11-25 19:51:19,587 | INFO     | current chi2=1.343673437606185 (change=0.9395474570731609 %)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,587 | INFO     | left removable region: 20
[2025-11-25 12:51:51] 2025-11-25 19:51:19,587 | INFO     | sum of square deviations: 19696741400.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,589 | INFO     | sum of deviations: 115482371307.99998
[2025-11-25 12:51:51] 2025-11-25 19:51:19,589 | INFO     | mean x: 1764087407.0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,589 | INFO     | mean y: 2272850.4812030075
[2025-11-25 12:51:51] 2025-11-25 19:51:19,589 | INFO     | intersect: -10340605335.193758
[2025-11-25 12:51:51] 2025-11-25 19:51:19,589 | INFO     | chi2: 0.021526688175491342
[2025-11-25 12:51:51] 2025-11-25 19:51:19,589 | INFO     | current memory leak: 5.86 B/s (using 399 data points, chi2=0.02)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | could have reported an average CPU frequency of 4617 MHz (18 samples)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | ..............................
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | . Timing measurements:
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | . get job = 0 s
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | . initial setup = 2 s
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | . payload setup = 2 s
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | . stage-in = 0 s
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | . payload execution = 26221 s
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | . stage-out = 3 s
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | . log creation = 0 s
[2025-11-25 12:51:51] 2025-11-25 19:51:19,590 | INFO     | ..............................
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | 
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | job summary report
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | --------------------------------------------------
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | PanDA job id: 6895375670
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | task id: 47556137
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | errors: (none)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | pilot state: finished 
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | transexitcode: 0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | exeerrorcode: 0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,633 | INFO     | exeerrordiag: 
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | exitcode: 0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | exitmsg: OK
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | cpuconsumptiontime: 104013 s
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | nevents: 1000
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | neventsw: 0
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | pid: 2991554
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | pgrp: 2991554
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | corecount: 4
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | event service: False
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | sizes: {0: 2284316, 2: 2284578, 11: 2284606, 26227: 2322098, 26231: 2331134, 26235: 2331190, 26236: 2331564}
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | --------------------------------------------------
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | 
[2025-11-25 12:51:51] 2025-11-25 19:51:19,634 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | job 6895375670 has completed (purged errors)
[2025-11-25 12:51:51] 2025-11-25 19:51:19,645 | INFO     | overall cleanup function is called
[2025-11-25 12:51:51] 2025-11-25 19:51:20,655 | INFO     | --- collectZombieJob: --- 10, [2991554]
[2025-11-25 12:51:51] 2025-11-25 19:51:20,655 | INFO     | zombie collector waiting for pid 2991554
[2025-11-25 12:51:51] 2025-11-25 19:51:20,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:51:51] 2025-11-25 19:51:20,656 | INFO     | collected zombie processes
[2025-11-25 12:51:51] 2025-11-25 19:51:20,656 | INFO     | will attempt to kill all subprocesses of pid=2991554
[2025-11-25 12:51:51] 2025-11-25 19:51:20,740 | INFO     | process IDs to be killed: [2991554] (in reverse order)
[2025-11-25 12:51:51] 2025-11-25 19:51:20,776 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:51:51] 2025-11-25 19:51:20,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:51:51] 2025-11-25 19:51:20,779 | INFO     | did not find any defunct processes belonging to 2991554
[2025-11-25 12:51:51] 2025-11-25 19:51:20,782 | INFO     | did not find any defunct processes belonging to 2991554
[2025-11-25 12:51:51] 2025-11-25 19:51:20,782 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:51:51] 2025-11-25 19:51:20,782 | INFO     | ready for new job
[2025-11-25 12:51:51] 2025-11-25 19:51:20,782 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:51:51] 2025-11-25 19:51:20,784 | INFO     | ***************************************
[2025-11-25 12:51:51] 2025-11-25 19:51:20,784 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:51:51] 2025-11-25 19:51:20,784 | INFO     | ***************************************
[2025-11-25 12:51:51] 2025-11-25 19:51:20,784 | INFO     | 
[2025-11-25 12:51:51] 2025-11-25 19:51:20,785 | INFO     | architecture information:
[2025-11-25 12:51:51] 2025-11-25 19:51:20,785 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:51:51] 2025-11-25 19:51:20,794 | INFO     | cat /etc/os-release:
[2025-11-25 12:51:51] NAME="CentOS Linux"
[2025-11-25 12:51:51] VERSION="7 (Core)"
[2025-11-25 12:51:51] ID="centos"
[2025-11-25 12:51:51] ID_LIKE="rhel fedora"
[2025-11-25 12:51:51] VERSION_ID="7"
[2025-11-25 12:51:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:51:51] ANSI_COLOR="0;31"
[2025-11-25 12:51:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:51:51] HOME_URL="https://www.centos.org/"
[2025-11-25 12:51:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:51:51] 
[2025-11-25 12:51:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:51:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:51:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:51:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:51:51] 
[2025-11-25 12:51:51] 2025-11-25 19:51:20,794 | INFO     | ***************************************
[2025-11-25 12:51:51] 2025-11-25 19:51:21,297 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2025-11-25 12:51:51] 2025-11-25 19:51:21,306 | INFO     | sufficient remaining disk space (243168968704 B)
[2025-11-25 12:51:51] 2025-11-25 19:51:21,306 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:51:51] 2025-11-25 19:51:21,306 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:51:51] 2025-11-25 19:51:21,306 | INFO     | update_server=False
[2025-11-25 12:51:51] 2025-11-25 19:51:21,306 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:51:51] 2025-11-25 19:51:21,306 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:51:51] 2025-11-25 19:51:21,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:51:51] 2025-11-25 19:51:21,307 | INFO     | aborting loop
[2025-11-25 12:51:51] 2025-11-25 19:51:21,978 | INFO     | all data control threads have been joined
[2025-11-25 12:51:51] 2025-11-25 19:51:22,206 | INFO     | all job control threads have been joined
[2025-11-25 12:51:51] 2025-11-25 19:51:22,308 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:22,311 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:22,312 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:22,324 | INFO     | all payload control threads have been joined
[2025-11-25 12:51:51] 2025-11-25 19:51:22,362 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:22,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:51:51] 2025-11-25 19:51:22,831 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:22,896 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:22,983 | INFO     | [data] control thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:23,155 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:23,211 | INFO     | [job] control thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:23,311 | INFO     | [job] validate thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:23,329 | INFO     | [payload] control thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:23,564 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:23,573 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:23,621 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:23,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:51:51] 2025-11-25 19:51:24,390 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:27,671 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:51:51] 2025-11-25 19:51:32,922 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:51:51] 2025-11-25 19:51:33,926 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134558267692864)>', '<ExcThread(monitor, started 134557491783424)>']
[2025-11-25 12:51:51] 2025-11-25 19:51:38,951 | INFO     | all workflow threads have been joined
[2025-11-25 12:51:51] 2025-11-25 19:51:38,951 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:51:51] 2025-11-25 19:51:38,951 | INFO     | traces error code: 0
[2025-11-25 12:51:51] 2025-11-25 19:51:38,951 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:51:51] 2025-11-25 19:51:50,959 | INFO     | PID=2984888 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:51:51] 2025-11-25 19:51:50,959 | INFO     | .. there are 7 such processes running
[2025-11-25 12:51:51] 2025-11-25 19:51:50,959 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:51:51] 2025-11-25 19:51:50,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:51:51] 2025-11-25 19:51:50,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:51:51] 2025-11-25 19:51:50,959 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:51:51] 2025-11-25 19:51:50,959 | INFO     | [monitor] control thread has ended
[2025-11-25 12:51:51] 2025-11-25 19:51:51,010 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:51:51] 2025-11-25 19:51:51,011 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:51:51] 2025-11-25 19:51:51,012 [wrapper] pilotpid: 2984888
[2025-11-25 12:51:51] 2025-11-25 19:51:51,013 [wrapper] Pilot exit status: 0
[2025-11-25 12:51:51] 2025-11-25 19:51:51,018 [wrapper] pandaids: 6895375670
[2025-11-25 12:51:51] 2025-11-25 19:51:51,041 [wrapper] cleanup supervisor_pilot 3364869 2984889
[2025-11-25 12:51:51] 2025-11-25 19:51:51,042 [wrapper] Test setup, not cleaning
[2025-11-25 12:51:51] 2025-11-25 19:51:51,044 [wrapper] apfmon messages muted
[2025-11-25 12:51:51] 2025-11-25 19:51:51,046 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:51:51] 2025-11-25 19:51:51,047 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:51:51]  *** Error codes and diagnostics ***
[2025-11-25 12:51:51]     "exeErrorCode": 0,
[2025-11-25 12:51:51]     "exeErrorDiag": "",
[2025-11-25 12:51:51]     "pilotErrorCode": 0,
[2025-11-25 12:51:51]     "pilotErrorDiag": "",
[2025-11-25 12:51:51]  *** Listing of results directory ***
[2025-11-25 12:51:51] total 1325380
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc    576529 Nov 23 16:11 pilot3.tar.gz
[2025-11-25 12:51:51] -rwx------ 1 boinc boinc     36292 Nov 23 17:02 runpilot2-wrapper.sh
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc      5112 Nov 23 17:02 queuedata.json
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc       100 Nov 25 05:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:51:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 05:33 run_atlas
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc       105 Nov 25 05:33 job.xml
[2025-11-25 12:51:51] -rw-r--r-- 2 boinc boinc 410648433 Nov 25 05:33 EVNT.47483658._000954.pool.root.1
[2025-11-25 12:51:51] -rw-r--r-- 2 boinc boinc     15847 Nov 25 05:33 start_atlas.sh
[2025-11-25 12:51:51] drwxrwx--x 2 boinc boinc      4096 Nov 25 05:33 shared
[2025-11-25 12:51:51] -rw-r--r-- 2 boinc boinc    590102 Nov 25 05:33 input.tar.gz
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc      9985 Nov 25 05:33 init_data.xml
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc         0 Nov 25 05:33 boinc_lockfile
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc      2783 Nov 25 05:33 pandaJob.out
[2025-11-25 12:51:51] -rw------- 1 boinc boinc    991894 Nov 25 05:33 agis_schedconf.cvmfs.json
[2025-11-25 12:51:51] drwx------ 5 boinc boinc      4096 Nov 25 05:33 pilot3
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc       532 Nov 25 12:47 boinc_task_state.xml
[2025-11-25 12:51:51] -rw------- 1 boinc boinc 932465477 Nov 25 12:50 HITS.47556137._009401.pool.root.1
[2025-11-25 12:51:51] -rw------- 1 boinc boinc        95 Nov 25 12:51 pilot_heartbeat.json
[2025-11-25 12:51:51] -rw------- 1 boinc boinc      1031 Nov 25 12:51 memory_monitor_summary.json
[2025-11-25 12:51:51] -rw------- 1 boinc boinc   1516240 Nov 25 12:51 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:51:51] -rw------- 1 boinc boinc   1268588 Nov 25 12:51 log.47556137._009401.job.log.tgz.1
[2025-11-25 12:51:51] -rw------- 1 boinc boinc      8550 Nov 25 12:51 heartbeat.json
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc      8192 Nov 25 12:51 boinc_mmap_file
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc        29 Nov 25 12:51 wrapper_checkpoint.txt
[2025-11-25 12:51:51] -rw------- 1 boinc boinc       822 Nov 25 12:51 pilotlog.txt
[2025-11-25 12:51:51] -rw------- 1 boinc boinc   3811636 Nov 25 12:51 log.47556137._009401.job.log.1
[2025-11-25 12:51:51] -rw------- 1 boinc boinc       353 Nov 25 12:51 output.list
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc       620 Nov 25 12:51 runtime_log
[2025-11-25 12:51:51] -rw------- 1 boinc boinc   5099520 Nov 25 12:51 result.tar.gz
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc      8940 Nov 25 12:51 runtime_log.err
[2025-11-25 12:51:51] -rw------- 1 boinc boinc       665 Nov 25 12:51 gi4NDmADZh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSqIKDmQKsxTm.diag
[2025-11-25 12:51:51] -rw-r--r-- 1 boinc boinc     21385 Nov 25 12:51 stderr.txt
[2025-11-25 12:51:51] HITS file was successfully produced:
[2025-11-25 12:51:51] -rw------- 1 boinc boinc 932465477 Nov 25 12:50 shared/HITS.pool.root.1
[2025-11-25 12:51:51]  *** Contents of shared directory: ***
[2025-11-25 12:51:51] total 1317220
[2025-11-25 12:51:51] -rw-r--r-- 2 boinc boinc 410648433 Nov 25 05:33 ATLAS.root_0
[2025-11-25 12:51:51] -rw-r--r-- 2 boinc boinc     15847 Nov 25 05:33 start_atlas.sh
[2025-11-25 12:51:51] -rw-r--r-- 2 boinc boinc    590102 Nov 25 05:33 input.tar.gz
[2025-11-25 12:51:51] -rw------- 1 boinc boinc 932465477 Nov 25 12:50 HITS.pool.root.1
[2025-11-25 12:51:51] -rw------- 1 boinc boinc   5099520 Nov 25 12:51 result.tar.gz
12:51:52 (2981034): run_atlas exited; CPU time 104033.506596
12:51:52 (2981034): called boinc_finish(0)

</stderr_txt>
]]>

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