Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:49:06 (28764): wrapper (7.7.26015): starting
07:49:06 (28764): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 07:49:06] Arguments: --nthreads 8
[2025-11-25 07:49:06] Threads: 8
[2025-11-25 07:49:06] Checking for CVMFS
[2025-11-25 07:49:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 07:49:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 07:49:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 07:49:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 07:49:06] 2.11.2.0 8814 116242 127208 153283 0 81 11621882 18432000 1885 130560 0 83486338 99.973 4955635 31637 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 07:49:06] CVMFS is ok
[2025-11-25 07:49:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 07:49:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 07:49:06] Further information can be found at the LHC@home message board.
[2025-11-25 07:49:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:49:06] Checking for apptainer binary...
[2025-11-25 07:49:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 07:49:06] Running /usr/bin/apptainer --version
[2025-11-25 07:49:06] apptainer version 1.3.2-1.el7
[2025-11-25 07:49:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:49:07] c-206-19.aglt2.org
[2025-11-25 07:49:07] apptainer works
[2025-11-25 07:49:07] Set ATHENA_PROC_NUMBER=8
[2025-11-25 07:49:07] Set ATHENA_CORE_NUMBER=8
[2025-11-25 07:49:07] Starting ATLAS job with PandaID=6895673694
[2025-11-25 07:49:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:05:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:05:20] 2025-11-26 08:04:24,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:05:20] 2025-11-26 08:04:25,795 | INFO     | time since job start (69306s) is within the limit (172800.0s)
[2025-11-26 03:05:20] 2025-11-26 08:04:25,971 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 03:05:20] 2025-11-26 08:04:25,975 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2455.75
[2025-11-26 03:05:20] 2025-11-26 08:04:25,978 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895673694/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:05:20] 2025-11-26 08:04:25,978 | INFO     | extracted standard info from prmon json
[2025-11-26 03:05:20] 2025-11-26 08:04:25,978 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:05:20] 2025-11-26 08:04:25,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:05:20] 2025-11-26 08:04:25,993 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:05:20] 2025-11-26 08:04:25,994 | INFO     | sum of square deviations: 454583166199.1229
[2025-11-26 03:05:20] 2025-11-26 08:04:26,018 | INFO     | sum of deviations: 2153390123698.0706
[2025-11-26 03:05:20] 2025-11-26 08:04:26,018 | INFO     | mean x: 1764109603.1144366
[2025-11-26 03:05:20] 2025-11-26 08:04:26,018 | INFO     | mean y: 2864965.9225352113
[2025-11-26 03:05:20] 2025-11-26 08:04:26,018 | INFO     | intersect: -8353837347.166508
[2025-11-26 03:05:20] 2025-11-26 08:04:26,019 | INFO     | chi2: 5.612555326571773
[2025-11-26 03:05:20] 2025-11-26 08:04:26,020 | INFO     | sum of square deviations: 448607341457.2272
[2025-11-26 03:05:20] 2025-11-26 08:04:26,043 | INFO     | sum of deviations: 2505580574032.596
[2025-11-26 03:05:20] 2025-11-26 08:04:26,043 | INFO     | mean x: 1764109450.617153
[2025-11-26 03:05:20] 2025-11-26 08:04:26,044 | INFO     | mean y: 2873949.0106100794
[2025-11-26 03:05:20] 2025-11-26 08:04:26,044 | INFO     | intersect: -9850104282.633184
[2025-11-26 03:05:20] 2025-11-26 08:04:26,045 | INFO     | chi2: 2.786964069707894
[2025-11-26 03:05:20] 2025-11-26 08:04:26,045 | INFO     | current chi2=2.786964069707894 (change=50.34411408804391 %)
[2025-11-26 03:05:20] 2025-11-26 08:04:26,046 | INFO     | sum of square deviations: 442684122352.8149
[2025-11-26 03:05:20] 2025-11-26 08:04:26,070 | INFO     | sum of deviations: 2624874863094.733
[2025-11-26 03:05:20] 2025-11-26 08:04:26,070 | INFO     | mean x: 1764109298.1198933
[2025-11-26 03:05:20] 2025-11-26 08:04:26,071 | INFO     | mean y: 2877017.7575488454
[2025-11-26 03:05:20] 2025-11-26 08:04:26,071 | INFO     | intersect: -10457326812.85575
[2025-11-26 03:05:20] 2025-11-26 08:04:26,072 | INFO     | chi2: 2.3367190831455615
[2025-11-26 03:05:20] 2025-11-26 08:04:26,073 | INFO     | current chi2=2.3367190831455615 (change=16.15539258134473 %)
[2025-11-26 03:05:20] 2025-11-26 08:04:26,073 | INFO     | right removable region: 1125
[2025-11-26 03:05:20] 2025-11-26 08:04:26,074 | INFO     | sum of square deviations: 448606915677.2275
[2025-11-26 03:05:20] 2025-11-26 08:04:26,119 | INFO     | sum of deviations: 1858483427909.5215
[2025-11-26 03:05:20] 2025-11-26 08:04:26,119 | INFO     | mean x: 1764109755.617153
[2025-11-26 03:05:20] 2025-11-26 08:04:26,120 | INFO     | mean y: 2872482.777188329
[2025-11-26 03:05:20] 2025-11-26 08:04:26,120 | INFO     | intersect: -7305460561.706959
[2025-11-26 03:05:20] 2025-11-26 08:04:26,121 | INFO     | chi2: 3.5697032426505193
[2025-11-26 03:05:20] 2025-11-26 08:04:26,122 | INFO     | current chi2=3.5697032426505193 (change=36.397896591766084 %)
[2025-11-26 03:05:20] 2025-11-26 08:04:26,123 | INFO     | sum of square deviations: 442683546757.7591
[2025-11-26 03:05:20] 2025-11-26 08:04:26,167 | INFO     | sum of deviations: 1783186861912.8394
[2025-11-26 03:05:20] 2025-11-26 08:04:26,167 | INFO     | mean x: 1764109908.116341
[2025-11-26 03:05:20] 2025-11-26 08:04:26,168 | INFO     | mean y: 2874420.9706927175
[2025-11-26 03:05:20] 2025-11-26 08:04:26,168 | INFO     | intersect: -7103189570.254862
[2025-11-26 03:05:20] 2025-11-26 08:04:26,169 | INFO     | chi2: 3.5167606657471393
[2025-11-26 03:05:20] 2025-11-26 08:04:26,169 | INFO     | current chi2=3.5167606657471393 (change=1.4831086312953543 %)
[2025-11-26 03:05:20] 2025-11-26 08:04:26,170 | INFO     | left removable region: 20
[2025-11-26 03:05:20] 2025-11-26 08:04:26,171 | INFO     | sum of square deviations: 418374719943.38745
[2025-11-26 03:05:20] 2025-11-26 08:04:26,206 | INFO     | sum of deviations: 2153128864011.19
[2025-11-26 03:05:20] 2025-11-26 08:04:26,206 | INFO     | mean x: 1764109877.6235294
[2025-11-26 03:05:20] 2025-11-26 08:04:26,207 | INFO     | mean y: 2889403.3466063347
[2025-11-26 03:05:20] 2025-11-26 08:04:26,207 | INFO     | intersect: -9075947619.388527
[2025-11-26 03:05:20] 2025-11-26 08:04:26,208 | INFO     | chi2: 0.20172376253140975
[2025-11-26 03:05:20] 2025-11-26 08:04:26,208 | INFO     | current memory leak: 5.15 B/s (using 1105 data points, chi2=0.20)
[2025-11-26 03:05:20] 2025-11-26 08:04:26,209 | INFO     | could have reported an average CPU frequency of 2626 MHz (41 samples)
[2025-11-26 03:05:20] 2025-11-26 08:04:26,209 | INFO     | ..............................
[2025-11-26 03:05:20] 2025-11-26 08:04:26,209 | INFO     | . Timing measurements:
[2025-11-26 03:05:20] 2025-11-26 08:04:26,209 | INFO     | . get job = 0 s
[2025-11-26 03:05:20] 2025-11-26 08:04:26,209 | INFO     | . initial setup = 2 s
[2025-11-26 03:05:20] 2025-11-26 08:04:26,209 | INFO     | . payload setup = 5 s
[2025-11-26 03:05:20] 2025-11-26 08:04:26,209 | INFO     | . stage-in = 0 s
[2025-11-26 03:05:20] 2025-11-26 08:04:26,209 | INFO     | . payload execution = 69269 s
[2025-11-26 03:05:20] 2025-11-26 08:04:26,209 | INFO     | . stage-out = 3 s
[2025-11-26 03:05:20] 2025-11-26 08:04:26,210 | INFO     | . log creation = 0 s
[2025-11-26 03:05:20] 2025-11-26 08:04:26,210 | INFO     | ..............................
[2025-11-26 03:05:20] 2025-11-26 08:04:26,533 | INFO     | 
[2025-11-26 03:05:20] 2025-11-26 08:04:26,533 | INFO     | job summary report
[2025-11-26 03:05:20] 2025-11-26 08:04:26,533 | INFO     | --------------------------------------------------
[2025-11-26 03:05:20] 2025-11-26 08:04:26,533 | INFO     | PanDA job id: 6895673694
[2025-11-26 03:05:20] 2025-11-26 08:04:26,533 | INFO     | task id: 47556149
[2025-11-26 03:05:20] 2025-11-26 08:04:26,533 | INFO     | errors: (none)
[2025-11-26 03:05:20] 2025-11-26 08:04:26,533 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:05:20] 2025-11-26 08:04:26,533 | INFO     | pilot state: finished 
[2025-11-26 03:05:20] 2025-11-26 08:04:26,533 | INFO     | transexitcode: 0
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | exeerrorcode: 0
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | exeerrordiag: 
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | exitcode: 0
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | exitmsg: OK
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | cpuconsumptiontime: 531670 s
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | nevents: 1000
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | neventsw: 0
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | pid: 6627
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | pgrp: 6627
[2025-11-26 03:05:20] 2025-11-26 08:04:26,534 | INFO     | corecount: 8
[2025-11-26 03:05:20] 2025-11-26 08:04:26,535 | INFO     | event service: False
[2025-11-26 03:05:20] 2025-11-26 08:04:26,535 | INFO     | sizes: {0: 2284087, 1: 2284342, 2: 2284342, 5: 2284632, 12: 2284688, 69278: 2340961, 69282: 2349955, 69285: 2350011, 69291: 2350353}
[2025-11-26 03:05:20] 2025-11-26 08:04:26,535 | INFO     | --------------------------------------------------
[2025-11-26 03:05:20] 2025-11-26 08:04:26,535 | INFO     | 
[2025-11-26 03:05:20] 2025-11-26 08:04:26,535 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 03:05:20] 2025-11-26 08:04:26,550 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,551 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,551 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,551 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,551 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,551 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,551 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,552 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:05:20] 2025-11-26 08:04:26,553 | INFO     | job 6895673694 has completed (purged errors)
[2025-11-26 03:05:20] 2025-11-26 08:04:26,553 | INFO     | overall cleanup function is called
[2025-11-26 03:05:20] 2025-11-26 08:04:27,565 | INFO     | --- collectZombieJob: --- 10, [6627]
[2025-11-26 03:05:20] 2025-11-26 08:04:27,565 | INFO     | zombie collector waiting for pid 6627
[2025-11-26 03:05:20] 2025-11-26 08:04:27,565 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:05:20] 2025-11-26 08:04:27,565 | INFO     | collected zombie processes
[2025-11-26 03:05:20] 2025-11-26 08:04:27,565 | INFO     | will attempt to kill all subprocesses of pid=6627
[2025-11-26 03:05:20] 2025-11-26 08:04:27,739 | INFO     | process IDs to be killed: [6627] (in reverse order)
[2025-11-26 03:05:20] 2025-11-26 08:04:27,798 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:05:20] 2025-11-26 08:04:27,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:05:20] 2025-11-26 08:04:27,804 | INFO     | did not find any defunct processes belonging to 6627
[2025-11-26 03:05:20] 2025-11-26 08:04:27,809 | INFO     | did not find any defunct processes belonging to 6627
[2025-11-26 03:05:20] 2025-11-26 08:04:27,811 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:05:20] 2025-11-26 08:04:27,811 | INFO     | ready for new job
[2025-11-26 03:05:20] 2025-11-26 08:04:27,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:05:20] 2025-11-26 08:04:27,816 | INFO     | ***************************************
[2025-11-26 03:05:20] 2025-11-26 08:04:27,816 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:05:20] 2025-11-26 08:04:27,816 | INFO     | ***************************************
[2025-11-26 03:05:20] 2025-11-26 08:04:27,816 | INFO     | 
[2025-11-26 03:05:20] 2025-11-26 08:04:27,818 | INFO     | architecture information:
[2025-11-26 03:05:20] 2025-11-26 08:04:27,818 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:05:20] 2025-11-26 08:04:27,833 | INFO     | cat /etc/os-release:
[2025-11-26 03:05:20] NAME="CentOS Linux"
[2025-11-26 03:05:20] VERSION="7 (Core)"
[2025-11-26 03:05:20] ID="centos"
[2025-11-26 03:05:20] ID_LIKE="rhel fedora"
[2025-11-26 03:05:20] VERSION_ID="7"
[2025-11-26 03:05:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:05:20] ANSI_COLOR="0;31"
[2025-11-26 03:05:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:05:20] HOME_URL="https://www.centos.org/"
[2025-11-26 03:05:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:05:20] 
[2025-11-26 03:05:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:05:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:05:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:05:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:05:20] 
[2025-11-26 03:05:20] 2025-11-26 08:04:27,834 | INFO     | ***************************************
[2025-11-26 03:05:20] 2025-11-26 08:04:28,337 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 03:05:20] 2025-11-26 08:04:28,351 | INFO     | sufficient remaining disk space (24652021760 B)
[2025-11-26 03:05:20] 2025-11-26 08:04:28,351 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:05:20] 2025-11-26 08:04:28,351 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:05:20] 2025-11-26 08:04:28,351 | INFO     | update_server=False
[2025-11-26 03:05:20] 2025-11-26 08:04:28,352 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:05:20] 2025-11-26 08:04:28,352 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:05:20] 2025-11-26 08:04:28,352 | INFO     | aborting loop
[2025-11-26 03:05:20] 2025-11-26 08:04:28,353 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:05:20] 2025-11-26 08:04:28,796 | INFO     | all payload control threads have been joined
[2025-11-26 03:05:20] 2025-11-26 08:04:29,357 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:29,358 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:29,381 | INFO     | all data control threads have been joined
[2025-11-26 03:05:20] 2025-11-26 08:04:29,492 | INFO     | all job control threads have been joined
[2025-11-26 03:05:20] 2025-11-26 08:04:29,764 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:29,801 | INFO     | [payload] control thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:30,080 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:30,150 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:30,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:05:20] 2025-11-26 08:04:30,331 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:30,358 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:30,386 | INFO     | [data] control thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:30,497 | INFO     | [job] control thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:30,541 | INFO     | [job] validate thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:30,605 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:30,606 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:31,300 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:05:20] 2025-11-26 08:04:32,305 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:34,291 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:38,401 | INFO     | job.realtimelogging is not enabled
[2025-11-26 03:05:20] 2025-11-26 08:04:39,406 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:05:20] 2025-11-26 08:04:59,061 | INFO     | PID=32490 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 03:05:20] 2025-11-26 08:04:59,061 | INFO     | .. there are 3 such processes running
[2025-11-26 03:05:20] 2025-11-26 08:04:59,061 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:05:20] 2025-11-26 08:04:59,061 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:05:20] 2025-11-26 08:04:59,061 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:05:20] 2025-11-26 08:05:13,571 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:05:20] 2025-11-26 08:05:15,475 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140453582468928)>', '<ExcThread(monitor, started 140452988700416)>']
[2025-11-26 03:05:20] 2025-11-26 08:05:16,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:05:20] 2025-11-26 08:05:16,150 | INFO     | [monitor] control thread has ended
[2025-11-26 03:05:20] 2025-11-26 08:05:20,500 | INFO     | all workflow threads have been joined
[2025-11-26 03:05:20] 2025-11-26 08:05:20,500 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:05:20] 2025-11-26 08:05:20,500 | INFO     | traces error code: 0
[2025-11-26 03:05:20] 2025-11-26 08:05:20,501 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:05:20] 2025-11-26 08:05:20,613 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:05:20] 2025-11-26 08:05:20,616 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:05:20] 2025-11-26 08:05:20,618 [wrapper] pilotpid: 32490
[2025-11-26 03:05:20] 2025-11-26 08:05:20,621 [wrapper] Pilot exit status: 0
[2025-11-26 03:05:20] 2025-11-26 08:05:20,629 [wrapper] pandaids: 6895673694
[2025-11-26 03:05:20] 2025-11-26 08:05:20,662 [wrapper] cleanup supervisor_pilot 27904 32491
[2025-11-26 03:05:20] 2025-11-26 08:05:20,665 [wrapper] Test setup, not cleaning
[2025-11-26 03:05:20] 2025-11-26 08:05:20,667 [wrapper] apfmon messages muted
[2025-11-26 03:05:20] 2025-11-26 08:05:20,669 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:05:20] 2025-11-26 08:05:20,671 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:05:20]  *** Error codes and diagnostics ***
[2025-11-26 03:05:20]     "exeErrorCode": 0,
[2025-11-26 03:05:20]     "exeErrorDiag": "",
[2025-11-26 03:05:20]     "pilotErrorCode": 0,
[2025-11-26 03:05:20]     "pilotErrorDiag": "",
[2025-11-26 03:05:20]  *** Listing of results directory ***
[2025-11-26 03:05:20] total 1313116
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 08:08 pilot3.tar.gz
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 08:16 queuedata.json
[2025-11-26 03:05:20] -rwx------ 1 boincer umatlas     36292 Nov 24 08:17 runpilot2-wrapper.sh
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas       100 Nov 25 07:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:05:20] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 07:49 run_atlas
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas       105 Nov 25 07:49 job.xml
[2025-11-26 03:05:20] -rw-r--r-- 2 boincer umatlas 408259523 Nov 25 07:49 EVNT.47483658._001349.pool.root.1
[2025-11-26 03:05:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 07:49 start_atlas.sh
[2025-11-26 03:05:20] drwxrwx--x 2 boincer umatlas      4096 Nov 25 07:49 shared
[2025-11-26 03:05:20] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 07:49 input.tar.gz
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas         0 Nov 25 07:49 boinc_lockfile
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 07:49 pandaJob.out
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas        57 Nov 25 07:49 setup.sh.local
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas    991909 Nov 25 07:49 agis_schedconf.cvmfs.json
[2025-11-26 03:05:20] drwx------ 5 boincer umatlas      4096 Nov 25 07:49 pilot3
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas       533 Nov 26 02:52 boinc_task_state.xml
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas      5954 Nov 26 03:03 init_data.xml
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas 908712929 Nov 26 03:03 HITS.47556149._003355.pool.root.1
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas        95 Nov 26 03:04 pilot_heartbeat.json
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas      1067 Nov 26 03:04 memory_monitor_summary.json
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas   1516240 Nov 26 03:04 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas   2305969 Nov 26 03:04 log.47556149._003355.job.log.tgz.1
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas      8663 Nov 26 03:04 heartbeat.json
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas        29 Nov 26 03:05 wrapper_checkpoint.txt
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 03:05 boinc_mmap_file
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas      4893 Nov 26 03:05 pilotlog.txt
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas   9565253 Nov 26 03:05 log.47556149._003355.job.log.1
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas       353 Nov 26 03:05 output.list
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas       620 Nov 26 03:05 runtime_log
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas  11888640 Nov 26 03:05 result.tar.gz
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 03:05 runtime_log.err
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas       668 Nov 26 03:05 kkuLDmsclh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDma4IKDmuRKFxn.diag
[2025-11-26 03:05:20] -rw-r--r-- 1 boincer umatlas     21277 Nov 26 03:05 stderr.txt
[2025-11-26 03:05:20] HITS file was successfully produced:
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas 908712929 Nov 26 03:03 shared/HITS.pool.root.1
[2025-11-26 03:05:20]  *** Contents of shared directory: ***
[2025-11-26 03:05:20] total 1298320
[2025-11-26 03:05:20] -rw-r--r-- 2 boincer umatlas 408259523 Nov 25 07:49 ATLAS.root_0
[2025-11-26 03:05:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 07:49 start_atlas.sh
[2025-11-26 03:05:20] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 07:49 input.tar.gz
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas 908712929 Nov 26 03:03 HITS.pool.root.1
[2025-11-26 03:05:20] -rw------- 1 boincer umatlas  11888640 Nov 26 03:05 result.tar.gz
03:05:22 (28764): run_atlas exited; CPU time 530079.075765
03:05:22 (28764): called boinc_finish(0)

</stderr_txt>
]]>

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