Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:22:57 (3145222): wrapper (7.7.26015): starting
08:22:57 (3145222): wrapper: running run_atlas (--nthreads 4)
[2025-11-28 08:22:57] Arguments: --nthreads 4
[2025-11-28 08:22:57] Threads: 4
[2025-11-28 08:22:57] Checking for CVMFS
[2025-11-28 08:22:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 08:22:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 08:22:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 08:22:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 08:22:58] 2.9.2.0 1145218 13746 90220 153400 1 81 32044769 36864000 0 130560 0 5534176 99.946 665374 2792 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 08:22:58] CVMFS is ok
[2025-11-28 08:22:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 08:22:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 08:22:58] Further information can be found at the LHC@home message board.
[2025-11-28 08:22:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 08:22:58] Checking for apptainer binary...
[2025-11-28 08:22:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 08:22:58] Running /usr/bin/apptainer --version
[2025-11-28 08:22:58] apptainer version 1.4.1-1.1
[2025-11-28 08:22:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 08:22:58] thA315a
[2025-11-28 08:22:58] apptainer works
[2025-11-28 08:22:58] Set ATHENA_PROC_NUMBER=4
[2025-11-28 08:22:58] Set ATHENA_CORE_NUMBER=4
[2025-11-28 08:22:58] Starting ATLAS job with PandaID=6895651781
[2025-11-28 08:22:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 14:57:59]  *** The last 200 lines of the pilot log: ***
[2025-11-28 14:57:59] 2025-11-28 13:57:26,771 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 14:57:59] 2025-11-28 13:57:26,771 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 14:57:59] 2025-11-28 13:57:26,771 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 14:57:59] 2025-11-28 13:57:26,771 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 14:57:59] 2025-11-28 13:57:26,771 | INFO     | job 6895651781 has completed (purged errors)
[2025-11-28 14:57:59] 2025-11-28 13:57:26,771 | INFO     | overall cleanup function is called
[2025-11-28 14:57:59] 2025-11-28 13:57:27,780 | INFO     | --- collectZombieJob: --- 10, [3155593]
[2025-11-28 14:57:59] 2025-11-28 13:57:27,781 | INFO     | zombie collector waiting for pid 3155593
[2025-11-28 14:57:59] 2025-11-28 13:57:27,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 14:57:59] 2025-11-28 13:57:27,781 | INFO     | collected zombie processes
[2025-11-28 14:57:59] 2025-11-28 13:57:27,781 | INFO     | will attempt to kill all subprocesses of pid=3155593
[2025-11-28 14:57:59] 2025-11-28 13:57:27,826 | INFO     | process IDs to be killed: [3155593] (in reverse order)
[2025-11-28 14:57:59] 2025-11-28 13:57:27,858 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 14:57:59] 2025-11-28 13:57:27,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 14:57:59] 2025-11-28 13:57:27,860 | INFO     | did not find any defunct processes belonging to 3155593
[2025-11-28 14:57:59] 2025-11-28 13:57:27,861 | INFO     | did not find any defunct processes belonging to 3155593
[2025-11-28 14:57:59] 2025-11-28 13:57:27,862 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 14:57:59] 2025-11-28 13:57:27,862 | INFO     | ready for new job
[2025-11-28 14:57:59] 2025-11-28 13:57:27,862 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 14:57:59] 2025-11-28 13:57:27,863 | INFO     | ***************************************
[2025-11-28 14:57:59] 2025-11-28 13:57:27,863 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 14:57:59] 2025-11-28 13:57:27,863 | INFO     | ***************************************
[2025-11-28 14:57:59] 2025-11-28 13:57:27,863 | INFO     | 
[2025-11-28 14:57:59] 2025-11-28 13:57:27,864 | INFO     | architecture information:
[2025-11-28 14:57:59] 2025-11-28 13:57:27,864 | INFO     | executing command: cat /etc/os-release
[2025-11-28 14:57:59] 2025-11-28 13:57:27,877 | INFO     | cat /etc/os-release:
[2025-11-28 14:57:59] NAME="CentOS Linux"
[2025-11-28 14:57:59] VERSION="7 (Core)"
[2025-11-28 14:57:59] ID="centos"
[2025-11-28 14:57:59] ID_LIKE="rhel fedora"
[2025-11-28 14:57:59] VERSION_ID="7"
[2025-11-28 14:57:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 14:57:59] ANSI_COLOR="0;31"
[2025-11-28 14:57:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 14:57:59] HOME_URL="https://www.centos.org/"
[2025-11-28 14:57:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 14:57:59] 
[2025-11-28 14:57:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 14:57:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 14:57:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 14:57:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 14:57:59] 
[2025-11-28 14:57:59] 2025-11-28 13:57:27,877 | INFO     | ***************************************
[2025-11-28 14:57:59] 2025-11-28 13:57:28,380 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 14:57:59] 2025-11-28 13:57:28,398 | INFO     | sufficient remaining disk space (223888801792 B)
[2025-11-28 14:57:59] 2025-11-28 13:57:28,398 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 14:57:59] 2025-11-28 13:57:28,398 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 14:57:59] 2025-11-28 13:57:28,398 | INFO     | update_server=False
[2025-11-28 14:57:59] 2025-11-28 13:57:28,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 14:57:59] 2025-11-28 13:57:28,398 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 14:57:59] 2025-11-28 13:57:28,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:57:59] 2025-11-28 13:57:28,399 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 14:57:59] 2025-11-28 13:57:28,672 | INFO     | all payload control threads have been joined
[2025-11-28 14:57:59] 2025-11-28 13:57:28,756 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 14:57:59] 2025-11-28 13:57:28,757 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 14:57:59] 2025-11-28 13:57:28,757 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:57:59] 2025-11-28 13:57:28,757 | INFO     | will abort loop
[2025-11-28 14:57:59] 2025-11-28 13:57:29,048 | INFO     | all data control threads have been joined
[2025-11-28 14:57:59] 2025-11-28 13:57:29,399 | INFO     | [job] retrieve thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:29,404 | INFO     | [job] queue monitor thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:29,413 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:29,424 | INFO     | [payload] failed_post thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:29,495 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:29,663 | INFO     | all job control threads have been joined
[2025-11-28 14:57:59] 2025-11-28 13:57:29,678 | INFO     | [payload] control thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:29,762 | INFO     | [job] job monitor thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:29,804 | INFO     | [data] copytool_in thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:30,054 | INFO     | [data] control thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:30,104 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:30,404 | INFO     | [data] copytool_out thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:30,668 | INFO     | [job] control thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:30,846 | INFO     | [payload] validate_post thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:30,864 | INFO     | [job] validate thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:32,406 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:35,897 | INFO     | [monitor] cgroup control has ended
[2025-11-28 14:57:59] 2025-11-28 13:57:38,493 | INFO     | job.realtimelogging is not enabled
[2025-11-28 14:57:59] 2025-11-28 13:57:39,499 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 14:57:59] 2025-11-28 13:57:40,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139934531909440)>', '<ExcThread(monitor, started 139933884851968)>']
[2025-11-28 14:57:59] 2025-11-28 13:57:45,608 | INFO     | all workflow threads have been joined
[2025-11-28 14:57:59] 2025-11-28 13:57:45,608 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 14:57:59] 2025-11-28 13:57:45,608 | INFO     | traces error code: 0
[2025-11-28 14:57:59] 2025-11-28 13:57:45,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 14:57:59] 2025-11-28 13:57:59,210 | INFO     | PID=3149016 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 14:57:59] 2025-11-28 13:57:59,210 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 14:57:59] 2025-11-28 13:57:59,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 14:57:59] 2025-11-28 13:57:59,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 14:57:59] 2025-11-28 13:57:59,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 14:57:59] 2025-11-28 13:57:59,211 | INFO     | [monitor] control thread has ended
[2025-11-28 14:57:59] 2025-11-28 13:57:59,276 [wrapper] ==== pilot stdout END ====
[2025-11-28 14:57:59] 2025-11-28 13:57:59,279 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 14:57:59] 2025-11-28 13:57:59,283 [wrapper] pilotpid: 3149016
[2025-11-28 14:57:59] 2025-11-28 13:57:59,287 [wrapper] Pilot exit status: 0
[2025-11-28 14:57:59] 2025-11-28 13:57:59,298 [wrapper] pandaids: 6895651781
[2025-11-28 14:57:59] 2025-11-28 13:57:59,319 [wrapper] cleanup supervisor_pilot 3197959 3149017
[2025-11-28 14:57:59] 2025-11-28 13:57:59,323 [wrapper] Test setup, not cleaning
[2025-11-28 14:57:59] 2025-11-28 13:57:59,326 [wrapper] apfmon messages muted
[2025-11-28 14:57:59] 2025-11-28 13:57:59,330 [wrapper] ==== wrapper stdout END ====
[2025-11-28 14:57:59] 2025-11-28 13:57:59,333 [wrapper] ==== wrapper stderr END ====
[2025-11-28 14:57:59]  *** Error codes and diagnostics ***
[2025-11-28 14:57:59]     "exeErrorCode": 0,
[2025-11-28 14:57:59]     "exeErrorDiag": "",
[2025-11-28 14:57:59]     "pilotErrorCode": 0,
[2025-11-28 14:57:59]     "pilotErrorDiag": "",
[2025-11-28 14:57:59]  *** Listing of results directory ***
[2025-11-28 14:57:59] total 1298496
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc    576529 Nov 24 13:18 pilot3.tar.gz
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc      5112 Nov 24 13:51 queuedata.json
[2025-11-28 14:57:59] -rwx------ 1 boinc boinc     36292 Nov 24 13:53 runpilot2-wrapper.sh
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc       100 Nov 28 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 14:57:59] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 08:22 run_atlas
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc       105 Nov 28 08:22 job.xml
[2025-11-28 14:57:59] -rw-r--r-- 2 boinc boinc 408835570 Nov 28 08:22 EVNT.47483658._001339.pool.root.1
[2025-11-28 14:57:59] -rw-r--r-- 2 boinc boinc    590107 Nov 28 08:22 input.tar.gz
[2025-11-28 14:57:59] -rw-r--r-- 2 boinc boinc     15847 Nov 28 08:22 start_atlas.sh
[2025-11-28 14:57:59] drwxrwx--x 2 boinc boinc      4096 Nov 28 08:22 shared
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc         0 Nov 28 08:22 boinc_setup_complete
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc      6372 Nov 28 08:22 init_data.xml
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc         0 Nov 28 08:22 boinc_lockfile
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc      2785 Nov 28 08:22 pandaJob.out
[2025-11-28 14:57:59] -rw------- 1 boinc boinc    991866 Nov 28 08:23 agis_schedconf.cvmfs.json
[2025-11-28 14:57:59] drwx------ 5 boinc boinc      4096 Nov 28 08:23 pilot3
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc       531 Nov 28 14:53 boinc_task_state.xml
[2025-11-28 14:57:59] -rw------- 1 boinc boinc 907751962 Nov 28 14:56 HITS.47556149._003255.pool.root.1
[2025-11-28 14:57:59] -rw------- 1 boinc boinc        95 Nov 28 14:57 pilot_heartbeat.json
[2025-11-28 14:57:59] -rw------- 1 boinc boinc      1029 Nov 28 14:57 memory_monitor_summary.json
[2025-11-28 14:57:59] -rw------- 1 boinc boinc   1516240 Nov 28 14:57 agis_ddmendpoints.agis.ALL.json
[2025-11-28 14:57:59] -rw------- 1 boinc boinc   1242683 Nov 28 14:57 log.47556149._003255.job.log.tgz.1
[2025-11-28 14:57:59] -rw------- 1 boinc boinc      8572 Nov 28 14:57 heartbeat.json
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc      8192 Nov 28 14:57 boinc_mmap_file
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc        28 Nov 28 14:57 wrapper_checkpoint.txt
[2025-11-28 14:57:59] -rw------- 1 boinc boinc       747 Nov 28 14:57 pilotlog.txt
[2025-11-28 14:57:59] -rw------- 1 boinc boinc   3341923 Nov 28 14:57 log.47556149._003255.job.log.1
[2025-11-28 14:57:59] -rw------- 1 boinc boinc       353 Nov 28 14:57 output.list
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc       620 Nov 28 14:57 runtime_log
[2025-11-28 14:57:59] -rw------- 1 boinc boinc   4608000 Nov 28 14:57 result.tar.gz
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc      8903 Nov 28 14:57 runtime_log.err
[2025-11-28 14:57:59] -rw------- 1 boinc boinc       666 Nov 28 14:57 QahLDmXFlh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmagLKDmx91IFm.diag
[2025-11-28 14:57:59] -rw-r--r-- 1 boinc boinc     11762 Nov 28 14:57 stderr.txt
[2025-11-28 14:57:59] HITS file was successfully produced:
[2025-11-28 14:57:59] -rw------- 1 boinc boinc 907751962 Nov 28 14:56 shared/HITS.pool.root.1
[2025-11-28 14:57:59]  *** Contents of shared directory: ***
[2025-11-28 14:57:59] total 1290836
[2025-11-28 14:57:59] -rw-r--r-- 2 boinc boinc 408835570 Nov 28 08:22 ATLAS.root_0
[2025-11-28 14:57:59] -rw-r--r-- 2 boinc boinc    590107 Nov 28 08:22 input.tar.gz
[2025-11-28 14:57:59] -rw-r--r-- 2 boinc boinc     15847 Nov 28 08:22 start_atlas.sh
[2025-11-28 14:57:59] -rw------- 1 boinc boinc 907751962 Nov 28 14:56 HITS.pool.root.1
[2025-11-28 14:57:59] -rw------- 1 boinc boinc   4608000 Nov 28 14:57 result.tar.gz
14:58:00 (3145222): run_atlas exited; CPU time 92625.900625
14:58:00 (3145222): called boinc_finish(0)

</stderr_txt>
]]>

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