Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:12:27 (3577249): wrapper (7.7.26015): starting
09:12:27 (3577249): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 09:12:27] Arguments: --nthreads 8
[2025-11-25 09:12:27] Threads: 8
[2025-11-25 09:12:27] Checking for CVMFS
[2025-11-25 09:12:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:12:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:12:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:12:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:12:30] 2.13.3.0 15513 28662 375796 153284 2 294 33815330 40960000 50911 16776704 0 286087286 99.866 95929407 31728 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 09:12:30] CVMFS is ok
[2025-11-25 09:12:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 09:12:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 09:12:30] Further information can be found at the LHC@home message board.
[2025-11-25 09:12:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:12:30] Checking for apptainer binary...
[2025-11-25 09:12:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:12:30] Running /usr/bin/apptainer --version
[2025-11-25 09:12:30] apptainer version 1.4.4-1.el9
[2025-11-25 09:12:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:12:31] c-1-1.aglt2.org
[2025-11-25 09:12:31] apptainer works
[2025-11-25 09:12:31] Set ATHENA_PROC_NUMBER=8
[2025-11-25 09:12:31] Set ATHENA_CORE_NUMBER=8
[2025-11-25 09:12:31] Starting ATLAS job with PandaID=6895673616
[2025-11-25 09:12:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:02:17]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:02:17] 2025-11-26 13:01:00,177 | INFO     | time since job start (82040s) is within the limit (172800.0s)
[2025-11-26 08:02:17] 2025-11-26 13:01:01,775 | INFO     | monitor loop #4467: job 0:6895673616 is in state 'finished'
[2025-11-26 08:02:17] 2025-11-26 13:01:01,775 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:02:17] 2025-11-26 13:01:02,186 | INFO     | time since job start (82042s) is within the limit (172800.0s)
[2025-11-26 08:02:17] 2025-11-26 13:01:04,195 | INFO     | time since job start (82044s) is within the limit (172800.0s)
[2025-11-26 08:02:17] 2025-11-26 13:01:04,290 | INFO     | monitor loop #4468: job 0:6895673616 is in state 'finished'
[2025-11-26 08:02:17] 2025-11-26 13:01:04,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:02:17] 2025-11-26 13:01:06,204 | INFO     | time since job start (82046s) is within the limit (172800.0s)
[2025-11-26 08:02:17] 2025-11-26 13:01:06,799 | INFO     | monitor loop #4469: job 0:6895673616 is in state 'finished'
[2025-11-26 08:02:17] 2025-11-26 13:01:06,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:02:17] 2025-11-26 13:01:08,210 | INFO     | time since job start (82048s) is within the limit (172800.0s)
[2025-11-26 08:02:17] 2025-11-26 13:01:09,335 | INFO     | monitor loop #4470: job 0:6895673616 is in state 'finished'
[2025-11-26 08:02:17] 2025-11-26 13:01:09,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:02:17] 2025-11-26 13:01:10,217 | INFO     | time since job start (82050s) is within the limit (172800.0s)
[2025-11-26 08:02:17] 2025-11-26 13:01:11,860 | INFO     | monitor loop #4471: job 0:6895673616 is in state 'finished'
[2025-11-26 08:02:17] 2025-11-26 13:01:11,860 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:02:17] 2025-11-26 13:01:12,225 | INFO     | time since job start (82052s) is within the limit (172800.0s)
[2025-11-26 08:02:17] 2025-11-26 13:01:12,704 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 08:02:17] 2025-11-26 13:01:12,720 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2917.7934374999995
[2025-11-26 08:02:17] 2025-11-26 13:01:12,734 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895673616/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:02:17] 2025-11-26 13:01:12,735 | INFO     | extracted standard info from prmon json
[2025-11-26 08:02:17] 2025-11-26 13:01:12,735 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:02:17] 2025-11-26 13:01:12,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:02:17] 2025-11-26 13:01:12,757 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:02:17] 2025-11-26 13:01:12,758 | INFO     | sum of square deviations: 749399853479.2639
[2025-11-26 08:02:17] 2025-11-26 13:01:12,873 | INFO     | sum of deviations: 3255711953678.49
[2025-11-26 08:02:17] 2025-11-26 13:01:12,873 | INFO     | mean x: 1764121086.7153502
[2025-11-26 08:02:17] 2025-11-26 13:01:12,873 | INFO     | mean y: 2863128.655737705
[2025-11-26 08:02:17] 2025-11-26 13:01:12,873 | INFO     | intersect: -7661229789.283933
[2025-11-26 08:02:17] 2025-11-26 13:01:12,875 | INFO     | chi2: 17.577271863392582
[2025-11-26 08:02:17] 2025-11-26 13:01:12,877 | INFO     | sum of square deviations: 741055199092.1322
[2025-11-26 08:02:17] 2025-11-26 13:01:13,000 | INFO     | sum of deviations: 3707251090231.4575
[2025-11-26 08:02:17] 2025-11-26 13:01:13,001 | INFO     | mean x: 1764120934.223635
[2025-11-26 08:02:17] 2025-11-26 13:01:13,001 | INFO     | mean y: 2871378.8780852654
[2025-11-26 08:02:17] 2025-11-26 13:01:13,001 | INFO     | intersect: -8822435109.373962
[2025-11-26 08:02:17] 2025-11-26 13:01:13,003 | INFO     | chi2: 14.32266399239637
[2025-11-26 08:02:17] 2025-11-26 13:01:13,003 | INFO     | current chi2=14.32266399239637 (change=18.516001210486152 %)
[2025-11-26 08:02:17] 2025-11-26 13:01:13,003 | INFO     | right removable region: 1336
[2025-11-26 08:02:17] 2025-11-26 13:01:13,004 | INFO     | sum of square deviations: 741053385562.1333
[2025-11-26 08:02:17] 2025-11-26 13:01:13,124 | INFO     | sum of deviations: 2750278034385.267
[2025-11-26 08:02:17] 2025-11-26 13:01:13,124 | INFO     | mean x: 1764121239.223635
[2025-11-26 08:02:17] 2025-11-26 13:01:13,124 | INFO     | mean y: 2872362.1563201197
[2025-11-26 08:02:17] 2025-11-26 13:01:13,124 | INFO     | intersect: -6544326515.491181
[2025-11-26 08:02:17] 2025-11-26 13:01:13,145 | INFO     | chi2: 13.894181521670319
[2025-11-26 08:02:17] 2025-11-26 13:01:13,145 | INFO     | current chi2=13.894181521670319 (change=20.95370868896256 %)
[2025-11-26 08:02:17] 2025-11-26 13:01:13,145 | INFO     | left removable region: 10
[2025-11-26 08:02:17] 2025-11-26 13:01:13,172 | INFO     | sum of square deviations: 722911984992.2758
[2025-11-26 08:02:17] 2025-11-26 13:01:13,265 | INFO     | sum of deviations: 2839197399547.6675
[2025-11-26 08:02:17] 2025-11-26 13:01:13,265 | INFO     | mean x: 1764121208.7413273
[2025-11-26 08:02:17] 2025-11-26 13:01:13,266 | INFO     | mean y: 2890734.2322775265
[2025-11-26 08:02:17] 2025-11-26 13:01:13,267 | INFO     | intersect: -6925599112.8391905
[2025-11-26 08:02:17] 2025-11-26 13:01:13,272 | INFO     | chi2: 7.057747537472956
[2025-11-26 08:02:17] 2025-11-26 13:01:13,273 | INFO     | current memory leak: 3.93 B/s (using 1326 data points, chi2=7.06)
[2025-11-26 08:02:17] 2025-11-26 13:01:13,274 | INFO     | could have reported an average CPU frequency of 2906 MHz (48 samples)
[2025-11-26 08:02:17] 2025-11-26 13:01:13,274 | INFO     | ..............................
[2025-11-26 08:02:17] 2025-11-26 13:01:13,274 | INFO     | . Timing measurements:
[2025-11-26 08:02:17] 2025-11-26 13:01:13,274 | INFO     | . get job = 0 s
[2025-11-26 08:02:17] 2025-11-26 13:01:13,274 | INFO     | . initial setup = 7 s
[2025-11-26 08:02:17] 2025-11-26 13:01:13,275 | INFO     | . payload setup = 44 s
[2025-11-26 08:02:17] 2025-11-26 13:01:13,275 | INFO     | . stage-in = 0 s
[2025-11-26 08:02:17] 2025-11-26 13:01:13,275 | INFO     | . payload execution = 81867 s
[2025-11-26 08:02:17] 2025-11-26 13:01:13,275 | INFO     | . stage-out = 11 s
[2025-11-26 08:02:17] 2025-11-26 13:01:13,275 | INFO     | . log creation = 2 s
[2025-11-26 08:02:17] 2025-11-26 13:01:13,275 | INFO     | ..............................
[2025-11-26 08:02:17] 2025-11-26 13:01:14,022 | INFO     | 
[2025-11-26 08:02:17] 2025-11-26 13:01:14,022 | INFO     | job summary report
[2025-11-26 08:02:17] 2025-11-26 13:01:14,022 | INFO     | --------------------------------------------------
[2025-11-26 08:02:17] 2025-11-26 13:01:14,022 | INFO     | PanDA job id: 6895673616
[2025-11-26 08:02:17] 2025-11-26 13:01:14,022 | INFO     | task id: 47556149
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | errors: (none)
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | pilot state: finished 
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | transexitcode: 0
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | exeerrorcode: 0
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | exeerrordiag: 
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | exitcode: 0
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | exitmsg: OK
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | cpuconsumptiontime: 259852 s
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | nevents: 1000
[2025-11-26 08:02:17] 2025-11-26 13:01:14,023 | INFO     | neventsw: 0
[2025-11-26 08:02:17] 2025-11-26 13:01:14,024 | INFO     | pid: 3601443
[2025-11-26 08:02:17] 2025-11-26 13:01:14,028 | INFO     | pgrp: 3601443
[2025-11-26 08:02:17] 2025-11-26 13:01:14,028 | INFO     | corecount: 8
[2025-11-26 08:02:17] 2025-11-26 13:01:14,028 | INFO     | event service: False
[2025-11-26 08:02:17] 2025-11-26 13:01:14,028 | INFO     | sizes: {0: 2283481, 1: 2284166, 2: 2284365, 3: 2284365, 14: 2284393, 25: 2284421, 38: 2284839, 49: 2284867, 81917: 2345911, 81919: 2345910, 81932: 2354988, 81934: 
[2025-11-26 08:02:17] 2025-11-26 13:01:14,028 | INFO     | --------------------------------------------------
[2025-11-26 08:02:17] 2025-11-26 13:01:14,028 | INFO     | 
[2025-11-26 08:02:17] 2025-11-26 13:01:14,029 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 08:02:17] 2025-11-26 13:01:14,123 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,124 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,125 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,125 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,125 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,125 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,125 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:02:17] 2025-11-26 13:01:14,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,125 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:02:17] 2025-11-26 13:01:14,125 | INFO     | job 6895673616 has completed (purged errors)
[2025-11-26 08:02:17] 2025-11-26 13:01:14,126 | INFO     | overall cleanup function is called
[2025-11-26 08:02:17] 2025-11-26 13:01:15,159 | INFO     | --- collectZombieJob: --- 10, [3601443]
[2025-11-26 08:02:17] 2025-11-26 13:01:15,159 | INFO     | zombie collector waiting for pid 3601443
[2025-11-26 08:02:17] 2025-11-26 13:01:15,159 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:02:17] 2025-11-26 13:01:15,159 | INFO     | collected zombie processes
[2025-11-26 08:02:17] 2025-11-26 13:01:15,159 | INFO     | will attempt to kill all subprocesses of pid=3601443
[2025-11-26 08:02:17] 2025-11-26 13:01:18,076 | INFO     | process IDs to be killed: [3601443] (in reverse order)
[2025-11-26 08:02:17] 2025-11-26 13:01:18,812 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:02:17] 2025-11-26 13:01:18,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:02:17] 2025-11-26 13:01:18,885 | INFO     | did not find any defunct processes belonging to 3601443
[2025-11-26 08:02:17] 2025-11-26 13:01:18,926 | INFO     | did not find any defunct processes belonging to 3601443
[2025-11-26 08:02:17] 2025-11-26 13:01:18,954 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:02:17] 2025-11-26 13:01:18,955 | INFO     | ready for new job
[2025-11-26 08:02:17] 2025-11-26 13:01:18,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:02:17] 2025-11-26 13:01:18,964 | INFO     | ***************************************
[2025-11-26 08:02:17] 2025-11-26 13:01:18,964 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:02:17] 2025-11-26 13:01:18,964 | INFO     | ***************************************
[2025-11-26 08:02:17] 2025-11-26 13:01:18,964 | INFO     | 
[2025-11-26 08:02:17] 2025-11-26 13:01:18,973 | INFO     | architecture information:
[2025-11-26 08:02:17] 2025-11-26 13:01:18,981 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:02:17] 2025-11-26 13:01:19,037 | INFO     | cat /etc/os-release:
[2025-11-26 08:02:17] NAME="CentOS Linux"
[2025-11-26 08:02:17] VERSION="7 (Core)"
[2025-11-26 08:02:17] ID="centos"
[2025-11-26 08:02:17] ID_LIKE="rhel fedora"
[2025-11-26 08:02:17] VERSION_ID="7"
[2025-11-26 08:02:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:02:17] ANSI_COLOR="0;31"
[2025-11-26 08:02:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:02:17] HOME_URL="https://www.centos.org/"
[2025-11-26 08:02:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:02:17] 
[2025-11-26 08:02:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:02:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:02:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:02:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:02:17] 
[2025-11-26 08:02:17] 2025-11-26 13:01:19,038 | INFO     | ***************************************
[2025-11-26 08:02:17] 2025-11-26 13:01:19,542 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 08:02:17] 2025-11-26 13:01:19,613 | INFO     | sufficient remaining disk space (100785979392 B)
[2025-11-26 08:02:17] 2025-11-26 13:01:19,614 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:02:17] 2025-11-26 13:01:19,614 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:02:17] 2025-11-26 13:01:19,614 | INFO     | update_server=False
[2025-11-26 08:02:17] 2025-11-26 13:01:19,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:02:17] 2025-11-26 13:01:19,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:02:17] 2025-11-26 13:01:20,032 | INFO     | all payload control threads have been joined
[2025-11-26 08:02:17] 2025-11-26 13:01:20,181 | INFO     | all job control threads have been joined
[2025-11-26 08:02:17] 2025-11-26 13:01:20,520 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:02:17] 2025-11-26 13:01:20,520 | INFO     | aborting loop
[2025-11-26 08:02:17] 2025-11-26 13:01:20,608 | INFO     | all data control threads have been joined
[2025-11-26 08:02:17] 2025-11-26 13:01:20,620 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:20,624 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:20,868 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:02:17] 2025-11-26 13:01:21,040 | INFO     | [payload] control thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:21,074 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:21,187 | INFO     | [job] control thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:21,363 | INFO     | [job] validate thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:21,526 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:21,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:02:17] 2025-11-26 13:01:21,579 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:21,588 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:21,614 | INFO     | [data] control thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:21,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:21,977 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:22,094 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:22,118 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:22,875 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:25,567 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:02:17] 2025-11-26 13:01:49,319 | INFO     | PID=3588821 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:02:17] 2025-11-26 13:01:49,319 | INFO     | .. there are 86 such processes running
[2025-11-26 08:02:17] 2025-11-26 13:01:49,322 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:02:17] 2025-11-26 13:01:49,323 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:02:17] 2025-11-26 13:01:49,323 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:02:17] 2025-11-26 13:02:08,714 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:02:17] 2025-11-26 13:02:10,364 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715881285440)>', '<ExcThread(monitor, started 140715367573248)>']
[2025-11-26 08:02:17] 2025-11-26 13:02:10,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:02:17] 2025-11-26 13:02:10,562 | INFO     | [monitor] control thread has ended
[2025-11-26 08:02:17] 2025-11-26 13:02:15,389 | INFO     | all workflow threads have been joined
[2025-11-26 08:02:17] 2025-11-26 13:02:15,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:02:17] 2025-11-26 13:02:15,389 | INFO     | traces error code: 0
[2025-11-26 08:02:17] 2025-11-26 13:02:15,390 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:02:17] 2025-11-26 13:02:16,422 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:02:17] 2025-11-26 13:02:16,447 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:02:17] 2025-11-26 13:02:16,453 [wrapper] pilotpid: 3588821
[2025-11-26 08:02:17] 2025-11-26 13:02:16,465 [wrapper] Pilot exit status: 0
[2025-11-26 08:02:17] 2025-11-26 13:02:16,562 [wrapper] pandaids: 6895673616
[2025-11-26 08:02:17] 2025-11-26 13:02:16,866 [wrapper] cleanup supervisor_pilot 3145769 3588822
[2025-11-26 08:02:17] 2025-11-26 13:02:16,917 [wrapper] Test setup, not cleaning
[2025-11-26 08:02:17] 2025-11-26 13:02:16,949 [wrapper] apfmon messages muted
[2025-11-26 08:02:17] 2025-11-26 13:02:16,980 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:02:17] 2025-11-26 13:02:16,998 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:02:17]  *** Error codes and diagnostics ***
[2025-11-26 08:02:17]     "exeErrorCode": 0,
[2025-11-26 08:02:17]     "exeErrorDiag": "",
[2025-11-26 08:02:17]     "pilotErrorCode": 0,
[2025-11-26 08:02:17]     "pilotErrorDiag": "",
[2025-11-26 08:02:17]  *** Listing of results directory ***
[2025-11-26 08:02:17] total 1337360
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 07:18 pilot3.tar.gz
[2025-11-26 08:02:17] -rwx------. 1 boincer umatlas     36292 Nov 24 07:55 runpilot2-wrapper.sh
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 07:55 queuedata.json
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas       100 Nov 25 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:02:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 09:12 run_atlas
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas       105 Nov 25 09:12 job.xml
[2025-11-26 08:02:17] -rw-r--r--. 2 boincer umatlas 411822975 Nov 25 09:12 EVNT.47483658._001343.pool.root.1
[2025-11-26 08:02:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 09:12 start_atlas.sh
[2025-11-26 08:02:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 09:12 shared
[2025-11-26 08:02:17] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 09:12 input.tar.gz
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas         0 Nov 25 09:12 boinc_lockfile
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 09:12 pandaJob.out
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas        57 Nov 25 09:12 setup.sh.local
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas    991909 Nov 25 09:13 agis_schedconf.cvmfs.json
[2025-11-26 08:02:17] drwx------. 5 boincer umatlas      4096 Nov 25 09:13 pilot3
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas       533 Nov 26 07:39 boinc_task_state.xml
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas      6842 Nov 26 07:58 init_data.xml
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas 929463811 Nov 26 07:59 HITS.47556149._003291.pool.root.1
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas      1058 Nov 26 08:00 memory_monitor_summary.json
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas   2363452 Nov 26 08:00 log.47556149._003291.job.log.tgz.1
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas      8622 Nov 26 08:01 heartbeat.json
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas        95 Nov 26 08:01 pilot_heartbeat.json
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:02 boinc_mmap_file
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas      4825 Nov 26 08:02 pilotlog.txt
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas        29 Nov 26 08:02 wrapper_checkpoint.txt
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas   9759661 Nov 26 08:02 log.47556149._003291.job.log.1
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas       353 Nov 26 08:02 output.list
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:02 runtime_log
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas  12144640 Nov 26 08:02 result.tar.gz
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 08:02 runtime_log.err
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas       657 Nov 26 08:02 6dmKDmsHlh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpgLKDmiRn5tn.diag
[2025-11-26 08:02:17] -rw-r--r--. 1 boincer umatlas     21814 Nov 26 08:02 stderr.txt
[2025-11-26 08:02:17] HITS file was successfully produced:
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas 929463811 Nov 26 07:59 shared/HITS.pool.root.1
[2025-11-26 08:02:17]  *** Contents of shared directory: ***
[2025-11-26 08:02:17] total 1322316
[2025-11-26 08:02:17] -rw-r--r--. 2 boincer umatlas 411822975 Nov 25 09:12 ATLAS.root_0
[2025-11-26 08:02:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 09:12 start_atlas.sh
[2025-11-26 08:02:17] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 09:12 input.tar.gz
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas 929463811 Nov 26 07:59 HITS.pool.root.1
[2025-11-26 08:02:17] -rw-------. 1 boincer umatlas  12144640 Nov 26 08:02 result.tar.gz
08:02:19 (3577249): run_atlas exited; CPU time 264014.476480
08:02:19 (3577249): called boinc_finish(0)

</stderr_txt>
]]>

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