Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:13:07 (2336067): wrapper (7.7.26015): starting
10:13:07 (2336067): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 10:13:07] Arguments: --nthreads 8
[2025-11-25 10:13:07] Threads: 8
[2025-11-25 10:13:07] Checking for CVMFS
[2025-11-25 10:13:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:13:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:13:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:13:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:13:08] 2.13.2.0 8445 34064 185928 153286 1 67 31293282 40960000 23151 16776704 0 72209342 99.780 37047097 35673 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 10:13:08] CVMFS is ok
[2025-11-25 10:13:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:13:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:13:08] Further information can be found at the LHC@home message board.
[2025-11-25 10:13:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:13:08] Checking for apptainer binary...
[2025-11-25 10:13:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:13:08] Running /usr/bin/apptainer --version
[2025-11-25 10:13:08] apptainer version 1.4.4-1.el9
[2025-11-25 10:13:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:13:08] c-212-2.aglt2.org
[2025-11-25 10:13:08] apptainer works
[2025-11-25 10:13:08] Set ATHENA_PROC_NUMBER=8
[2025-11-25 10:13:08] Set ATHENA_CORE_NUMBER=8
[2025-11-25 10:13:08] Starting ATLAS job with PandaID=6895674321
[2025-11-25 10:13:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:17:11]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:17:11] 2025-11-27 02:15:58,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:11] 2025-11-27 02:15:58,523 | INFO     | PID=2339733 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 21:17:11] 2025-11-27 02:15:58,523 | INFO     | .. there are 18 such processes running
[2025-11-26 21:17:11] 2025-11-27 02:15:59,546 | INFO     | time since job start (126157s) is within the limit (172800.0s)
[2025-11-26 21:17:11] 2025-11-27 02:16:00,668 | INFO     | monitor loop #7999: job 0:6895674321 is in state 'finished'
[2025-11-26 21:17:11] 2025-11-27 02:16:00,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:11] 2025-11-27 02:16:01,554 | INFO     | time since job start (126159s) is within the limit (172800.0s)
[2025-11-26 21:17:11] 2025-11-27 02:16:03,176 | INFO     | monitor loop #8000: job 0:6895674321 is in state 'finished'
[2025-11-26 21:17:11] 2025-11-27 02:16:03,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:11] 2025-11-27 02:16:03,561 | INFO     | time since job start (126161s) is within the limit (172800.0s)
[2025-11-26 21:17:11] 2025-11-27 02:16:05,568 | INFO     | time since job start (126163s) is within the limit (172800.0s)
[2025-11-26 21:17:11] 2025-11-27 02:16:05,683 | INFO     | monitor loop #8001: job 0:6895674321 is in state 'finished'
[2025-11-26 21:17:11] 2025-11-27 02:16:05,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:11] 2025-11-27 02:16:07,580 | INFO     | time since job start (126165s) is within the limit (172800.0s)
[2025-11-26 21:17:11] 2025-11-27 02:16:07,993 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 21:17:11] 2025-11-27 02:16:08,021 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3061.798645833332
[2025-11-26 21:17:11] 2025-11-27 02:16:08,042 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895674321/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:17:11] 2025-11-27 02:16:08,043 | INFO     | extracted standard info from prmon json
[2025-11-26 21:17:11] 2025-11-27 02:16:08,043 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:17:11] 2025-11-27 02:16:08,043 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:17:11] 2025-11-27 02:16:08,165 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:17:11] 2025-11-27 02:16:08,184 | INFO     | sum of square deviations: 2742542092561.3315
[2025-11-26 21:17:11] 2025-11-27 02:16:08,204 | INFO     | monitor loop #8002: job 0:6895674321 is in state 'finished'
[2025-11-26 21:17:11] 2025-11-27 02:16:08,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:11] 2025-11-27 02:16:09,332 | INFO     | sum of deviations: 38837327000896.586
[2025-11-26 21:17:11] 2025-11-27 02:16:09,333 | INFO     | mean x: 1764146678.8259187
[2025-11-26 21:17:11] 2025-11-27 02:16:09,333 | INFO     | mean y: 3989361.66827853
[2025-11-26 21:17:11] 2025-11-27 02:16:09,333 | INFO     | intersect: -24978212964.028824
[2025-11-26 21:17:11] 2025-11-27 02:16:09,348 | INFO     | chi2: 33.527569296630105
[2025-11-26 21:17:11] 2025-11-27 02:16:09,350 | INFO     | sum of square deviations: 2722699968919.218
[2025-11-26 21:17:11] 2025-11-27 02:16:09,556 | INFO     | sum of deviations: 39942828477692.77
[2025-11-26 21:17:11] 2025-11-27 02:16:09,556 | INFO     | mean x: 1764146526.331556
[2025-11-26 21:17:11] 2025-11-27 02:16:09,556 | INFO     | mean y: 3997858.036839554
[2025-11-26 21:17:11] 2025-11-27 02:16:09,556 | INFO     | intersect: -25876562951.14777
[2025-11-26 21:17:11] 2025-11-27 02:16:09,562 | INFO     | chi2: 29.161880574872725
[2025-11-26 21:17:11] 2025-11-27 02:16:09,562 | INFO     | current chi2=29.161880574872725 (change=13.021190659939014 %)
[2025-11-26 21:17:11] 2025-11-27 02:16:09,562 | INFO     | right removable region: 2062
[2025-11-26 21:17:11] 2025-11-27 02:16:09,569 | INFO     | sum of square deviations: 2722697034819.2173
[2025-11-26 21:17:11] 2025-11-27 02:16:09,688 | INFO     | time since job start (126167s) is within the limit (172800.0s)
[2025-11-26 21:17:11] 2025-11-27 02:16:10,044 | INFO     | sum of deviations: 37710545999945.12
[2025-11-26 21:17:11] 2025-11-27 02:16:10,045 | INFO     | mean x: 1764146831.331556
[2025-11-26 21:17:11] 2025-11-27 02:16:10,060 | INFO     | mean y: 3998020.4309258363
[2025-11-26 21:17:11] 2025-11-27 02:16:10,060 | INFO     | intersect: -24430207982.95694
[2025-11-26 21:17:11] 2025-11-27 02:16:10,062 | INFO     | chi2: 29.769205950435524
[2025-11-26 21:17:11] 2025-11-27 02:16:10,062 | INFO     | current chi2=29.769205950435524 (change=11.209769825372753 %)
[2025-11-26 21:17:11] 2025-11-27 02:16:10,062 | INFO     | left removable region: 10
[2025-11-26 21:17:11] 2025-11-27 02:16:10,085 | INFO     | sum of square deviations: 2679378863870.097
[2025-11-26 21:17:11] 2025-11-27 02:16:10,671 | INFO     | sum of deviations: 38167011925726.35
[2025-11-26 21:17:11] 2025-11-27 02:16:10,671 | INFO     | mean x: 1764146800.8440547
[2025-11-26 21:17:11] 2025-11-27 02:16:10,671 | INFO     | mean y: 4015247.48245614
[2025-11-26 21:17:11] 2025-11-27 02:16:10,671 | INFO     | intersect: -25125768708.97241
[2025-11-26 21:17:11] 2025-11-27 02:16:10,673 | INFO     | chi2: 22.543277557666567
[2025-11-26 21:17:11] 2025-11-27 02:16:10,673 | INFO     | current memory leak: 14.24 B/s (using 2052 data points, chi2=22.54)
[2025-11-26 21:17:11] 2025-11-27 02:16:10,675 | INFO     | could have reported an average CPU frequency of 3060 MHz (73 samples)
[2025-11-26 21:17:11] 2025-11-27 02:16:10,675 | INFO     | ..............................
[2025-11-26 21:17:11] 2025-11-27 02:16:10,675 | INFO     | . Timing measurements:
[2025-11-26 21:17:11] 2025-11-27 02:16:10,675 | INFO     | . get job = 0 s
[2025-11-26 21:17:11] 2025-11-27 02:16:10,675 | INFO     | . initial setup = 2 s
[2025-11-26 21:17:11] 2025-11-27 02:16:10,676 | INFO     | . payload setup = 7 s
[2025-11-26 21:17:11] 2025-11-27 02:16:10,676 | INFO     | . stage-in = 0 s
[2025-11-26 21:17:11] 2025-11-27 02:16:10,676 | INFO     | . payload execution = 126109 s
[2025-11-26 21:17:11] 2025-11-27 02:16:10,676 | INFO     | . stage-out = 9 s
[2025-11-26 21:17:11] 2025-11-27 02:16:10,676 | INFO     | . log creation = 2 s
[2025-11-26 21:17:11] 2025-11-27 02:16:10,676 | INFO     | ..............................
[2025-11-26 21:17:11] 2025-11-27 02:16:11,159 | INFO     | 
[2025-11-26 21:17:11] 2025-11-27 02:16:11,163 | INFO     | job summary report
[2025-11-26 21:17:11] 2025-11-27 02:16:11,163 | INFO     | --------------------------------------------------
[2025-11-26 21:17:11] 2025-11-27 02:16:11,163 | INFO     | PanDA job id: 6895674321
[2025-11-26 21:17:11] 2025-11-27 02:16:11,163 | INFO     | task id: 47556149
[2025-11-26 21:17:11] 2025-11-27 02:16:11,163 | INFO     | errors: (none)
[2025-11-26 21:17:11] 2025-11-27 02:16:11,163 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:17:11] 2025-11-27 02:16:11,163 | INFO     | pilot state: finished 
[2025-11-26 21:17:11] 2025-11-27 02:16:11,163 | INFO     | transexitcode: 0
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | exeerrorcode: 0
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | exeerrordiag: 
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | exitcode: 0
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | exitmsg: OK
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | cpuconsumptiontime: 210704 s
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | nevents: 1000
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | neventsw: 0
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | pid: 2346129
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | pgrp: 2346129
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | corecount: 8
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | event service: False
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | sizes: {0: 2284087, 1: 2284286, 6: 2284548, 11: 2284576, 126121: 2367820, 126130: 2376814, 126133: 2376998, 126152: 2377244}
[2025-11-26 21:17:11] 2025-11-27 02:16:11,164 | INFO     | --------------------------------------------------
[2025-11-26 21:17:11] 2025-11-27 02:16:11,165 | INFO     | 
[2025-11-26 21:17:11] 2025-11-27 02:16:11,165 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 21:17:11] 2025-11-27 02:16:11,210 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,210 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,210 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,210 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,210 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,210 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,210 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:17:11] 2025-11-27 02:16:11,211 | INFO     | job 6895674321 has completed (purged errors)
[2025-11-26 21:17:11] 2025-11-27 02:16:11,212 | INFO     | overall cleanup function is called
[2025-11-26 21:17:11] 2025-11-27 02:16:12,231 | INFO     | --- collectZombieJob: --- 10, [2346129]
[2025-11-26 21:17:11] 2025-11-27 02:16:12,231 | INFO     | zombie collector waiting for pid 2346129
[2025-11-26 21:17:11] 2025-11-27 02:16:12,231 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:17:11] 2025-11-27 02:16:12,232 | INFO     | collected zombie processes
[2025-11-26 21:17:11] 2025-11-27 02:16:12,232 | INFO     | will attempt to kill all subprocesses of pid=2346129
[2025-11-26 21:17:11] 2025-11-27 02:16:13,184 | INFO     | process IDs to be killed: [2346129] (in reverse order)
[2025-11-26 21:17:11] 2025-11-27 02:16:13,383 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:17:11] 2025-11-27 02:16:13,384 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:17:11] 2025-11-27 02:16:13,427 | INFO     | did not find any defunct processes belonging to 2346129
[2025-11-26 21:17:11] 2025-11-27 02:16:13,464 | INFO     | did not find any defunct processes belonging to 2346129
[2025-11-26 21:17:11] 2025-11-27 02:16:13,466 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:17:11] 2025-11-27 02:16:13,466 | INFO     | ready for new job
[2025-11-26 21:17:11] 2025-11-27 02:16:13,466 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:17:11] 2025-11-27 02:16:13,482 | INFO     | ***************************************
[2025-11-26 21:17:11] 2025-11-27 02:16:13,487 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:17:11] 2025-11-27 02:16:13,487 | INFO     | ***************************************
[2025-11-26 21:17:11] 2025-11-27 02:16:13,487 | INFO     | 
[2025-11-26 21:17:11] 2025-11-27 02:16:13,497 | INFO     | architecture information:
[2025-11-26 21:17:11] 2025-11-27 02:16:13,501 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:17:11] 2025-11-27 02:16:13,539 | INFO     | cat /etc/os-release:
[2025-11-26 21:17:11] NAME="CentOS Linux"
[2025-11-26 21:17:11] VERSION="7 (Core)"
[2025-11-26 21:17:11] ID="centos"
[2025-11-26 21:17:11] ID_LIKE="rhel fedora"
[2025-11-26 21:17:11] VERSION_ID="7"
[2025-11-26 21:17:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:17:11] ANSI_COLOR="0;31"
[2025-11-26 21:17:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:17:11] HOME_URL="https://www.centos.org/"
[2025-11-26 21:17:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:17:11] 
[2025-11-26 21:17:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:17:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:17:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:17:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:17:11] 
[2025-11-26 21:17:11] 2025-11-27 02:16:13,539 | INFO     | ***************************************
[2025-11-26 21:17:11] 2025-11-27 02:16:14,043 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 21:17:11] 2025-11-27 02:16:14,089 | INFO     | sufficient remaining disk space (122186366976 B)
[2025-11-26 21:17:11] 2025-11-27 02:16:14,089 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:17:11] 2025-11-27 02:16:14,090 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:17:11] 2025-11-27 02:16:14,090 | INFO     | update_server=False
[2025-11-26 21:17:11] 2025-11-27 02:16:14,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:17:11] 2025-11-27 02:16:14,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:17:11] 2025-11-27 02:16:14,410 | INFO     | aborting loop
[2025-11-26 21:17:11] 2025-11-27 02:16:14,477 | INFO     | all data control threads have been joined
[2025-11-26 21:17:11] 2025-11-27 02:16:14,883 | INFO     | all job control threads have been joined
[2025-11-26 21:17:11] 2025-11-27 02:16:14,913 | INFO     | all payload control threads have been joined
[2025-11-26 21:17:11] 2025-11-27 02:16:15,096 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:15,342 | INFO     | [job] validate thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:15,416 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:15,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:17:11] 2025-11-27 02:16:15,493 | INFO     | [data] control thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:15,518 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:15,622 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:15,859 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:17:11] 2025-11-27 02:16:15,889 | INFO     | [job] control thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:15,918 | INFO     | [payload] control thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:15,947 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:15,951 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:16,188 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:16,188 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:16,192 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:16,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:17:11] 2025-11-27 02:16:16,865 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:17,503 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:20,615 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:17:11] 2025-11-27 02:16:44,013 | INFO     | PID=2339733 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:17:11] 2025-11-27 02:16:44,013 | INFO     | .. there are 18 such processes running
[2025-11-26 21:17:11] 2025-11-27 02:16:44,014 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:17:11] 2025-11-27 02:16:44,014 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:17:11] 2025-11-27 02:16:44,014 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:17:11] 2025-11-27 02:17:01,247 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:17:11] 2025-11-27 02:17:02,428 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139909088384832)>', '<ExcThread(monitor, started 139908584810240)>']
[2025-11-26 21:17:11] 2025-11-27 02:17:03,216 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:17:11] 2025-11-27 02:17:03,216 | INFO     | [monitor] control thread has ended
[2025-11-26 21:17:11] 2025-11-27 02:17:07,454 | INFO     | all workflow threads have been joined
[2025-11-26 21:17:11] 2025-11-27 02:17:07,454 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:17:11] 2025-11-27 02:17:07,457 | INFO     | traces error code: 0
[2025-11-26 21:17:11] 2025-11-27 02:17:07,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:17:11] 2025-11-27 02:17:08,797 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:17:11] 2025-11-27 02:17:08,829 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:17:11] 2025-11-27 02:17:08,878 [wrapper] pilotpid: 2339733
[2025-11-26 21:17:11] 2025-11-27 02:17:08,922 [wrapper] Pilot exit status: 0
[2025-11-26 21:17:11] 2025-11-27 02:17:09,160 [wrapper] pandaids: 6895674321
[2025-11-26 21:17:11] 2025-11-27 02:17:09,962 [wrapper] cleanup supervisor_pilot 2907197 2339734
[2025-11-26 21:17:11] 2025-11-27 02:17:10,002 [wrapper] Test setup, not cleaning
[2025-11-26 21:17:11] 2025-11-27 02:17:10,038 [wrapper] apfmon messages muted
[2025-11-26 21:17:11] 2025-11-27 02:17:10,166 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:17:11] 2025-11-27 02:17:10,206 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:17:11]  *** Error codes and diagnostics ***
[2025-11-26 21:17:11]     "exeErrorCode": 0,
[2025-11-26 21:17:11]     "exeErrorDiag": "",
[2025-11-26 21:17:11]     "pilotErrorCode": 0,
[2025-11-26 21:17:11]     "pilotErrorDiag": "",
[2025-11-26 21:17:11]  *** Listing of results directory ***
[2025-11-26 21:17:11] total 1336812
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 08:08 pilot3.tar.gz
[2025-11-26 21:17:11] -rwx------. 1 boincer umatlas     36292 Nov 24 08:25 runpilot2-wrapper.sh
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 08:25 queuedata.json
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas       100 Nov 25 10:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:17:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 10:13 run_atlas
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas       105 Nov 25 10:13 job.xml
[2025-11-26 21:17:11] -rw-r--r--. 2 boincer umatlas 409705712 Nov 25 10:13 EVNT.47483658._001352.pool.root.1
[2025-11-26 21:17:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:13 start_atlas.sh
[2025-11-26 21:17:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 10:13 shared
[2025-11-26 21:17:11] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 10:13 input.tar.gz
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas         0 Nov 25 10:13 boinc_lockfile
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas      2782 Nov 25 10:13 pandaJob.out
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas        57 Nov 25 10:13 setup.sh.local
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas    991909 Nov 25 10:13 agis_schedconf.cvmfs.json
[2025-11-26 21:17:11] drwx------. 5 boincer umatlas      4096 Nov 25 10:13 pilot3
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:58 boinc_task_state.xml
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 21:11 init_data.xml
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas 916685111 Nov 26 21:15 HITS.47556149._003381.pool.root.1
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas      1077 Nov 26 21:15 memory_monitor_summary.json
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas   2948461 Nov 26 21:15 log.47556149._003381.job.log.tgz.1
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas        95 Nov 26 21:15 pilot_heartbeat.json
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas      8640 Nov 26 21:16 heartbeat.json
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas      4825 Nov 26 21:17 pilotlog.txt
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas  16343868 Nov 26 21:17 log.47556149._003381.job.log.1
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas       353 Nov 26 21:17 output.list
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:17 wrapper_checkpoint.txt
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:17 boinc_mmap_file
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:17 runtime_log
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas  19312640 Nov 26 21:17 result.tar.gz
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas       670 Nov 26 21:17 sC4MDmpklh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmj4IKDmspLrLn.diag
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas      9339 Nov 26 21:17 runtime_log.err
[2025-11-26 21:17:11] -rw-r--r--. 1 boincer umatlas     21863 Nov 26 21:17 stderr.txt
[2025-11-26 21:17:11] HITS file was successfully produced:
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas 916685111 Nov 26 21:15 shared/HITS.pool.root.1
[2025-11-26 21:17:11]  *** Contents of shared directory: ***
[2025-11-26 21:17:11] total 1314768
[2025-11-26 21:17:11] -rw-r--r--. 2 boincer umatlas 409705712 Nov 25 10:13 ATLAS.root_0
[2025-11-26 21:17:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:13 start_atlas.sh
[2025-11-26 21:17:11] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 10:13 input.tar.gz
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas 916685111 Nov 26 21:15 HITS.pool.root.1
[2025-11-26 21:17:11] -rw-------. 1 boincer umatlas  19312640 Nov 26 21:17 result.tar.gz
21:17:13 (2336067): run_atlas exited; CPU time 211730.429511
21:17:13 (2336067): called boinc_finish(0)

</stderr_txt>
]]>

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