Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:25:36 (1853): wrapper (7.7.26015): starting
08:25:36 (1853): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 08:25:36] Arguments: --nthreads 8
[2025-11-25 08:25:36] Threads: 8
[2025-11-25 08:25:36] Checking for CVMFS
[2025-11-25 08:25:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:25:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:25:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:25:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:25:37] 2.11.2.0 26213 64224 85684 153284 2 81 16270922 20275201 1 130560 0 15880066 99.841 3636443 30375 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 08:25:37] CVMFS is ok
[2025-11-25 08:25:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:25:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:25:37] Further information can be found at the LHC@home message board.
[2025-11-25 08:25:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:25:37] Checking for apptainer binary...
[2025-11-25 08:25:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:25:37] Running /usr/bin/apptainer --version
[2025-11-25 08:25:37] apptainer version 1.3.2-1.el7
[2025-11-25 08:25:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:25:39] c-115-4.aglt2.org
[2025-11-25 08:25:39] apptainer works
[2025-11-25 08:25:39] Set ATHENA_PROC_NUMBER=8
[2025-11-25 08:25:39] Set ATHENA_CORE_NUMBER=8
[2025-11-25 08:25:39] Starting ATLAS job with PandaID=6895673706
[2025-11-25 08:25:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:31:07]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:31:07] 2025-11-26 00:30:30,062 | INFO     | time since job start (39874s) is within the limit (172800.0s)
[2025-11-25 19:31:07] 2025-11-26 00:30:32,067 | INFO     | time since job start (39876s) is within the limit (172800.0s)
[2025-11-25 19:31:07] 2025-11-26 00:30:32,313 | INFO     | monitor loop #2912: job 0:6895673706 is in state 'finished'
[2025-11-25 19:31:07] 2025-11-26 00:30:32,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:31:07] 2025-11-26 00:30:32,936 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 19:31:07] 2025-11-26 00:30:32,942 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-11-25 19:31:07] 2025-11-26 00:30:32,944 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895673706/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:31:07] 2025-11-26 00:30:32,945 | INFO     | extracted standard info from prmon json
[2025-11-25 19:31:07] 2025-11-26 00:30:32,945 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:31:07] 2025-11-26 00:30:32,945 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:31:07] 2025-11-26 00:30:32,956 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:31:07] 2025-11-26 00:30:32,956 | INFO     | sum of square deviations: 86341006151.5222
[2025-11-25 19:31:07] 2025-11-26 00:30:32,964 | INFO     | sum of deviations: 577713477090.0394
[2025-11-25 19:31:07] 2025-11-26 00:30:32,965 | INFO     | mean x: 1764097073.673813
[2025-11-25 19:31:07] 2025-11-26 00:30:32,965 | INFO     | mean y: 3161276.277182236
[2025-11-25 19:31:07] 2025-11-26 00:30:32,965 | INFO     | intersect: -11800530848.504646
[2025-11-25 19:31:07] 2025-11-26 00:30:32,966 | INFO     | chi2: 5.77854810639605
[2025-11-25 19:31:07] 2025-11-26 00:30:32,966 | INFO     | sum of square deviations: 84372954609.23392
[2025-11-25 19:31:07] 2025-11-26 00:30:32,974 | INFO     | sum of deviations: 811585546616.3206
[2025-11-25 19:31:07] 2025-11-26 00:30:32,975 | INFO     | mean x: 1764096921.1790123
[2025-11-25 19:31:07] 2025-11-26 00:30:32,975 | INFO     | mean y: 3179392.87654321
[2025-11-25 19:31:07] 2025-11-26 00:30:32,975 | INFO     | intersect: -16965712720.598732
[2025-11-25 19:31:07] 2025-11-26 00:30:32,976 | INFO     | chi2: 2.7282422515586604
[2025-11-25 19:31:07] 2025-11-26 00:30:32,976 | INFO     | current chi2=2.7282422515586604 (change=52.78671733235421 %)
[2025-11-25 19:31:07] 2025-11-26 00:30:32,976 | INFO     | sum of square deviations: 82435043166.9111
[2025-11-25 19:31:07] 2025-11-26 00:30:32,984 | INFO     | sum of deviations: 879795678652.0657
[2025-11-25 19:31:07] 2025-11-26 00:30:32,984 | INFO     | mean x: 1764096768.6842923
[2025-11-25 19:31:07] 2025-11-26 00:30:32,984 | INFO     | mean y: 3184746.7589424574
[2025-11-25 19:31:07] 2025-11-26 00:30:32,985 | INFO     | intersect: -18824302377.497143
[2025-11-25 19:31:07] 2025-11-26 00:30:32,985 | INFO     | chi2: 2.312993775328302
[2025-11-25 19:31:07] 2025-11-26 00:30:32,986 | INFO     | current chi2=2.312993775328302 (change=15.220366739541713 %)
[2025-11-25 19:31:07] 2025-11-26 00:30:32,986 | INFO     | right removable region: 642
[2025-11-25 19:31:07] 2025-11-26 00:30:32,986 | INFO     | sum of square deviations: 84372686209.23392
[2025-11-25 19:31:07] 2025-11-26 00:30:32,994 | INFO     | sum of deviations: 383598440946.7464
[2025-11-25 19:31:07] 2025-11-26 00:30:32,994 | INFO     | mean x: 1764097226.1790123
[2025-11-25 19:31:07] 2025-11-26 00:30:32,995 | INFO     | mean y: 3176288.760802469
[2025-11-25 19:31:07] 2025-11-26 00:30:32,995 | INFO     | intersect: -8017250416.187333
[2025-11-25 19:31:07] 2025-11-26 00:30:32,995 | INFO     | chi2: 3.588288995972346
[2025-11-25 19:31:07] 2025-11-26 00:30:32,995 | INFO     | current chi2=3.588288995972346 (change=37.90327726093327 %)
[2025-11-25 19:31:07] 2025-11-26 00:30:32,996 | INFO     | sum of square deviations: 82434585545.64256
[2025-11-25 19:31:07] 2025-11-26 00:30:33,004 | INFO     | sum of deviations: 344868389124.9205
[2025-11-25 19:31:07] 2025-11-26 00:30:33,004 | INFO     | mean x: 1764097378.681182
[2025-11-25 19:31:07] 2025-11-26 00:30:33,004 | INFO     | mean y: 3179334.472783826
[2025-11-25 19:31:07] 2025-11-26 00:30:33,004 | INFO     | intersect: -7376992679.716867
[2025-11-25 19:31:07] 2025-11-26 00:30:33,005 | INFO     | chi2: 3.5475684040445823
[2025-11-25 19:31:07] 2025-11-26 00:30:33,005 | INFO     | current chi2=3.5475684040445823 (change=1.1348191846718632 %)
[2025-11-25 19:31:07] 2025-11-26 00:30:33,005 | INFO     | left removable region: 20
[2025-11-25 19:31:07] 2025-11-26 00:30:33,006 | INFO     | sum of square deviations: 74618933546.23315
[2025-11-25 19:31:07] 2025-11-26 00:30:33,015 | INFO     | sum of deviations: 603456856615.3778
[2025-11-25 19:31:07] 2025-11-26 00:30:33,015 | INFO     | mean x: 1764097348.1913183
[2025-11-25 19:31:07] 2025-11-26 00:30:33,015 | INFO     | mean y: 3206624.5514469454
[2025-11-25 19:31:07] 2025-11-26 00:30:33,015 | INFO     | intersect: -14263368759.34181
[2025-11-25 19:31:07] 2025-11-26 00:30:33,016 | INFO     | chi2: 0.04954826664607401
[2025-11-25 19:31:07] 2025-11-26 00:30:33,016 | INFO     | current memory leak: 8.09 B/s (using 622 data points, chi2=0.05)
[2025-11-25 19:31:07] 2025-11-26 00:30:33,016 | INFO     | could have reported an average CPU frequency of 2410 MHz (25 samples)
[2025-11-25 19:31:07] 2025-11-26 00:30:33,017 | INFO     | ..............................
[2025-11-25 19:31:07] 2025-11-26 00:30:33,017 | INFO     | . Timing measurements:
[2025-11-25 19:31:07] 2025-11-26 00:30:33,017 | INFO     | . get job = 0 s
[2025-11-25 19:31:07] 2025-11-26 00:30:33,017 | INFO     | . initial setup = 2 s
[2025-11-25 19:31:07] 2025-11-26 00:30:33,017 | INFO     | . payload setup = 8 s
[2025-11-25 19:31:07] 2025-11-26 00:30:33,017 | INFO     | . stage-in = 0 s
[2025-11-25 19:31:07] 2025-11-26 00:30:33,017 | INFO     | . payload execution = 39835 s
[2025-11-25 19:31:07] 2025-11-26 00:30:33,017 | INFO     | . stage-out = 3 s
[2025-11-25 19:31:07] 2025-11-26 00:30:33,017 | INFO     | . log creation = 0 s
[2025-11-25 19:31:07] 2025-11-26 00:30:33,018 | INFO     | ..............................
[2025-11-25 19:31:07] 2025-11-26 00:30:33,097 | INFO     | 
[2025-11-25 19:31:07] 2025-11-26 00:30:33,097 | INFO     | job summary report
[2025-11-25 19:31:07] 2025-11-26 00:30:33,097 | INFO     | --------------------------------------------------
[2025-11-25 19:31:07] 2025-11-26 00:30:33,098 | INFO     | PanDA job id: 6895673706
[2025-11-25 19:31:07] 2025-11-26 00:30:33,098 | INFO     | task id: 47556149
[2025-11-25 19:31:07] 2025-11-26 00:30:33,098 | INFO     | errors: (none)
[2025-11-25 19:31:07] 2025-11-26 00:30:33,098 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:31:07] 2025-11-26 00:30:33,098 | INFO     | pilot state: finished 
[2025-11-25 19:31:07] 2025-11-26 00:30:33,098 | INFO     | transexitcode: 0
[2025-11-25 19:31:07] 2025-11-26 00:30:33,099 | INFO     | exeerrorcode: 0
[2025-11-25 19:31:07] 2025-11-26 00:30:33,099 | INFO     | exeerrordiag: 
[2025-11-25 19:31:07] 2025-11-26 00:30:33,099 | INFO     | exitcode: 0
[2025-11-25 19:31:07] 2025-11-26 00:30:33,099 | INFO     | exitmsg: OK
[2025-11-25 19:31:07] 2025-11-26 00:30:33,099 | INFO     | cpuconsumptiontime: 310433 s
[2025-11-25 19:31:07] 2025-11-26 00:30:33,099 | INFO     | nevents: 1000
[2025-11-25 19:31:07] 2025-11-26 00:30:33,100 | INFO     | neventsw: 0
[2025-11-25 19:31:07] 2025-11-26 00:30:33,100 | INFO     | pid: 12076
[2025-11-25 19:31:07] 2025-11-26 00:30:33,100 | INFO     | pgrp: 12076
[2025-11-25 19:31:07] 2025-11-26 00:30:33,100 | INFO     | corecount: 8
[2025-11-25 19:31:07] 2025-11-26 00:30:33,100 | INFO     | event service: False
[2025-11-25 19:31:07] 2025-11-26 00:30:33,101 | INFO     | sizes: {0: 2283486, 1: 2284342, 7: 2284604, 12: 2284632, 39848: 2328081, 39851: 2337075, 39854: 2337259, 39860: 2337569}
[2025-11-25 19:31:07] 2025-11-26 00:30:33,101 | INFO     | --------------------------------------------------
[2025-11-25 19:31:07] 2025-11-26 00:30:33,101 | INFO     | 
[2025-11-25 19:31:07] 2025-11-26 00:30:33,101 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 19:31:07] 2025-11-26 00:30:33,129 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,130 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,130 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,130 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,130 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,131 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,131 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,131 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,131 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,132 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,132 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,132 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,132 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,132 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,132 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,132 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,133 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,133 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:31:07] 2025-11-26 00:30:33,133 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,133 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:31:07] 2025-11-26 00:30:33,133 | INFO     | job 6895673706 has completed (purged errors)
[2025-11-25 19:31:07] 2025-11-26 00:30:33,134 | INFO     | overall cleanup function is called
[2025-11-25 19:31:07] 2025-11-26 00:30:34,148 | INFO     | --- collectZombieJob: --- 10, [12076]
[2025-11-25 19:31:07] 2025-11-26 00:30:34,155 | INFO     | zombie collector waiting for pid 12076
[2025-11-25 19:31:07] 2025-11-26 00:30:34,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:31:07] 2025-11-26 00:30:34,156 | INFO     | collected zombie processes
[2025-11-25 19:31:07] 2025-11-26 00:30:34,156 | INFO     | will attempt to kill all subprocesses of pid=12076
[2025-11-25 19:31:07] 2025-11-26 00:30:34,242 | INFO     | process IDs to be killed: [12076] (in reverse order)
[2025-11-25 19:31:07] 2025-11-26 00:30:34,298 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:31:07] 2025-11-26 00:30:34,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:31:07] 2025-11-26 00:30:34,303 | INFO     | did not find any defunct processes belonging to 12076
[2025-11-25 19:31:07] 2025-11-26 00:30:34,306 | INFO     | did not find any defunct processes belonging to 12076
[2025-11-25 19:31:07] 2025-11-26 00:30:34,308 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:31:07] 2025-11-26 00:30:34,308 | INFO     | ready for new job
[2025-11-25 19:31:07] 2025-11-26 00:30:34,308 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:31:07] 2025-11-26 00:30:34,311 | INFO     | ***************************************
[2025-11-25 19:31:07] 2025-11-26 00:30:34,311 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:31:07] 2025-11-26 00:30:34,312 | INFO     | ***************************************
[2025-11-25 19:31:07] 2025-11-26 00:30:34,312 | INFO     | 
[2025-11-25 19:31:07] 2025-11-26 00:30:34,312 | INFO     | architecture information:
[2025-11-25 19:31:07] 2025-11-26 00:30:34,313 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:31:07] 2025-11-26 00:30:34,331 | INFO     | cat /etc/os-release:
[2025-11-25 19:31:07] NAME="CentOS Linux"
[2025-11-25 19:31:07] VERSION="7 (Core)"
[2025-11-25 19:31:07] ID="centos"
[2025-11-25 19:31:07] ID_LIKE="rhel fedora"
[2025-11-25 19:31:07] VERSION_ID="7"
[2025-11-25 19:31:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:31:07] ANSI_COLOR="0;31"
[2025-11-25 19:31:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:31:07] HOME_URL="https://www.centos.org/"
[2025-11-25 19:31:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:31:07] 
[2025-11-25 19:31:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:31:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:31:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:31:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:31:07] 
[2025-11-25 19:31:07] 2025-11-26 00:30:34,332 | INFO     | ***************************************
[2025-11-25 19:31:07] 2025-11-26 00:30:34,835 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 19:31:07] 2025-11-26 00:30:34,856 | INFO     | sufficient remaining disk space (17478713344 B)
[2025-11-25 19:31:07] 2025-11-26 00:30:34,856 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:31:07] 2025-11-26 00:30:34,857 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:31:07] 2025-11-26 00:30:34,857 | INFO     | update_server=False
[2025-11-25 19:31:07] 2025-11-26 00:30:34,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:31:07] 2025-11-26 00:30:34,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:31:07] 2025-11-26 00:30:34,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:31:07] 2025-11-26 00:30:35,487 | INFO     | all data control threads have been joined
[2025-11-25 19:31:07] 2025-11-26 00:30:35,606 | INFO     | all job control threads have been joined
[2025-11-25 19:31:07] 2025-11-26 00:30:35,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:31:07] 2025-11-26 00:30:35,820 | INFO     | aborting loop
[2025-11-25 19:31:07] 2025-11-26 00:30:35,862 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:35,862 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:35,917 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:35,999 | INFO     | all payload control threads have been joined
[2025-11-25 19:31:07] 2025-11-26 00:30:36,226 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:36,233 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:36,296 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:36,345 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:36,428 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:36,490 | INFO     | [data] control thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:36,611 | INFO     | [job] control thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:36,825 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:36,860 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:36,983 | INFO     | [job] validate thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:37,004 | INFO     | [payload] control thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:37,326 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:30:37,634 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:31:07] 2025-11-26 00:30:41,641 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:31:07] 2025-11-26 00:31:02,109 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:31:07] 2025-11-26 00:31:02,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140696450672448)>', '<ExcThread(monitor, started 140695268484864)>']
[2025-11-25 19:31:07] 2025-11-26 00:31:05,266 | INFO     | PID=5599 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 19:31:07] 2025-11-26 00:31:05,267 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:31:07] 2025-11-26 00:31:05,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:31:07] 2025-11-26 00:31:05,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:31:07] 2025-11-26 00:31:05,267 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:31:07] 2025-11-26 00:31:05,267 | INFO     | [monitor] control thread has ended
[2025-11-25 19:31:07] 2025-11-26 00:31:07,479 | INFO     | all workflow threads have been joined
[2025-11-25 19:31:07] 2025-11-26 00:31:07,479 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:31:07] 2025-11-26 00:31:07,479 | INFO     | traces error code: 0
[2025-11-25 19:31:07] 2025-11-26 00:31:07,480 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:31:07] 2025-11-26 00:31:07,579 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:31:07] 2025-11-26 00:31:07,583 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:31:07] 2025-11-26 00:31:07,588 [wrapper] pilotpid: 5599
[2025-11-25 19:31:07] 2025-11-26 00:31:07,592 [wrapper] Pilot exit status: 0
[2025-11-25 19:31:07] 2025-11-26 00:31:07,610 [wrapper] pandaids: 6895673706
[2025-11-25 19:31:07] 2025-11-26 00:31:07,651 [wrapper] cleanup supervisor_pilot 16464 5600
[2025-11-25 19:31:07] 2025-11-26 00:31:07,657 [wrapper] Test setup, not cleaning
[2025-11-25 19:31:07] 2025-11-26 00:31:07,662 [wrapper] apfmon messages muted
[2025-11-25 19:31:07] 2025-11-26 00:31:07,667 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:31:07] 2025-11-26 00:31:07,672 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:31:07]  *** Error codes and diagnostics ***
[2025-11-25 19:31:07]     "exeErrorCode": 0,
[2025-11-25 19:31:07]     "exeErrorDiag": "",
[2025-11-25 19:31:07]     "pilotErrorCode": 0,
[2025-11-25 19:31:07]     "pilotErrorDiag": "",
[2025-11-25 19:31:07]  *** Listing of results directory ***
[2025-11-25 19:31:07] total 1311036
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 08:08 pilot3.tar.gz
[2025-11-25 19:31:07] -rwx------ 1 boincer umatlas     36292 Nov 24 08:16 runpilot2-wrapper.sh
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 08:16 queuedata.json
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas       100 Nov 25 08:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:31:07] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 08:25 run_atlas
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas       105 Nov 25 08:25 job.xml
[2025-11-25 19:31:07] -rw-r--r-- 2 boincer umatlas 412452714 Nov 25 08:25 EVNT.47483658._001350.pool.root.1
[2025-11-25 19:31:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 08:25 start_atlas.sh
[2025-11-25 19:31:07] drwxrwx--x 2 boincer umatlas      4096 Nov 25 08:25 shared
[2025-11-25 19:31:07] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 08:25 input.tar.gz
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas         0 Nov 25 08:25 boinc_lockfile
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 08:25 pandaJob.out
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas        57 Nov 25 08:25 setup.sh.local
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas    991909 Nov 25 08:25 agis_schedconf.cvmfs.json
[2025-11-25 19:31:07] drwx------ 5 boincer umatlas      4096 Nov 25 08:25 pilot3
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas       533 Nov 25 19:19 boinc_task_state.xml
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas 911374906 Nov 25 19:29 HITS.47556149._003367.pool.root.1
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas      1063 Nov 25 19:30 memory_monitor_summary.json
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas   1516240 Nov 25 19:30 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas   1901565 Nov 25 19:30 log.47556149._003367.job.log.tgz.1
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas        95 Nov 25 19:30 pilot_heartbeat.json
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas      8657 Nov 25 19:30 heartbeat.json
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas      5912 Nov 25 19:30 init_data.xml
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 19:30 boinc_mmap_file
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas        29 Nov 25 19:30 wrapper_checkpoint.txt
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas      4745 Nov 25 19:31 pilotlog.txt
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas   5477128 Nov 25 19:31 log.47556149._003367.job.log.1
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas       353 Nov 25 19:31 output.list
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas       620 Nov 25 19:31 runtime_log
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas   7393280 Nov 25 19:31 result.tar.gz
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas      9338 Nov 25 19:31 runtime_log.err
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas       666 Nov 25 19:31 9G9NDmPblh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmO4IKDmwfftbn.diag
[2025-11-25 19:31:07] -rw-r--r-- 1 boincer umatlas     21300 Nov 25 19:31 stderr.txt
[2025-11-25 19:31:07] HITS file was successfully produced:
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas 911374906 Nov 25 19:29 shared/HITS.pool.root.1
[2025-11-25 19:31:07]  *** Contents of shared directory: ***
[2025-11-25 19:31:07] total 1300624
[2025-11-25 19:31:07] -rw-r--r-- 2 boincer umatlas 412452714 Nov 25 08:25 ATLAS.root_0
[2025-11-25 19:31:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 08:25 start_atlas.sh
[2025-11-25 19:31:07] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 08:25 input.tar.gz
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas 911374906 Nov 25 19:29 HITS.pool.root.1
[2025-11-25 19:31:07] -rw------- 1 boincer umatlas   7393280 Nov 25 19:31 result.tar.gz
19:31:09 (1853): run_atlas exited; CPU time 308851.795133
19:31:09 (1853): called boinc_finish(0)

</stderr_txt>
]]>

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