Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:05:32 (432154): wrapper (7.7.26015): starting
13:05:32 (432154): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 13:05:32] Arguments: --nthreads 3
[2025-11-25 13:05:32] Threads: 3
[2025-11-25 13:05:32] Checking for CVMFS
[2025-11-25 13:05:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:05:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:05:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:05:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:05:32] 2.9.2.0 411005 4 46512 153281 3 88 35163865 36864001 0 130560 0 62627 100.000 1 10 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 13:05:32] CVMFS is ok
[2025-11-25 13:05:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:05:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:05:32] Further information can be found at the LHC@home message board.
[2025-11-25 13:05:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:05:32] Checking for apptainer binary...
[2025-11-25 13:05:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:05:32] Running /usr/bin/apptainer --version
[2025-11-25 13:05:32] apptainer version 1.4.1-1.1
[2025-11-25 13:05:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:05:32] thA335
[2025-11-25 13:05:32] apptainer works
[2025-11-25 13:05:32] Set ATHENA_PROC_NUMBER=3
[2025-11-25 13:05:32] Set ATHENA_CORE_NUMBER=3
[2025-11-25 13:05:32] Starting ATLAS job with PandaID=6895334153
[2025-11-25 13:05:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:09:51]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:09:51] 2025-11-25 12:08:56,479 | INFO     | cat /etc/os-release:
[2025-11-25 13:09:51] NAME="CentOS Linux"
[2025-11-25 13:09:51] VERSION="7 (Core)"
[2025-11-25 13:09:51] ID="centos"
[2025-11-25 13:09:51] ID_LIKE="rhel fedora"
[2025-11-25 13:09:51] VERSION_ID="7"
[2025-11-25 13:09:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:09:51] ANSI_COLOR="0;31"
[2025-11-25 13:09:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:09:51] HOME_URL="https://www.centos.org/"
[2025-11-25 13:09:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:09:51] 
[2025-11-25 13:09:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:09:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:09:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:09:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:09:51] 
[2025-11-25 13:09:51] 2025-11-25 12:08:56,479 | INFO     | ***************************************
[2025-11-25 13:09:51] 2025-11-25 12:08:56,983 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 13:09:51] 2025-11-25 12:08:56,997 | INFO     | sufficient remaining disk space (826869284864 B)
[2025-11-25 13:09:51] 2025-11-25 12:08:56,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:09:51] 2025-11-25 12:08:56,997 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:09:51] 2025-11-25 12:08:56,998 | INFO     | update_server=False
[2025-11-25 13:09:51] 2025-11-25 12:08:56,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:09:51] 2025-11-25 12:08:56,998 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 13:09:51] 2025-11-25 12:08:56,998 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:09:51] 2025-11-25 12:08:56,998 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:09:51] 2025-11-25 12:08:56,998 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:09:51] 2025-11-25 12:08:56,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:09:51] 2025-11-25 12:08:56,998 | INFO     | aborting loop
[2025-11-25 13:09:51] 2025-11-25 12:08:56,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:09:51] 2025-11-25 12:08:57,643 | INFO     | all data control threads have been joined
[2025-11-25 13:09:51] 2025-11-25 12:08:58,003 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:58,004 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:58,005 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:58,247 | INFO     | all payload control threads have been joined
[2025-11-25 13:09:51] 2025-11-25 12:08:58,261 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:09:51] 2025-11-25 12:08:58,344 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:58,432 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:09:51] 2025-11-25 12:08:58,434 | INFO     | all job control threads have been joined
[2025-11-25 13:09:51] 2025-11-25 12:08:58,560 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:58,628 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:58,649 | INFO     | [data] control thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:58,676 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:59,243 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:59,253 | INFO     | [payload] control thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:59,254 | INFO     | [job] validate thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:59,338 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:59,394 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:08:59,440 | INFO     | [job] control thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:09:00,268 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:09:02,439 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:09:51] 2025-11-25 12:09:45,579 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:09:51] 2025-11-25 12:09:46,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631222826816)>', '<ExcThread(monitor, started 139630940751616)>']
[2025-11-25 13:09:51] 2025-11-25 12:09:47,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:09:51] 2025-11-25 12:09:47,266 | INFO     | [monitor] control thread has ended
[2025-11-25 13:09:51] 2025-11-25 12:09:51,531 | INFO     | all workflow threads have been joined
[2025-11-25 13:09:51] 2025-11-25 12:09:51,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:09:51] 2025-11-25 12:09:51,532 | INFO     | traces error code: 0
[2025-11-25 13:09:51] 2025-11-25 12:09:51,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:09:51] 2025-11-25 12:09:51,579 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:09:51] 2025-11-25 12:09:51,582 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:09:51] 2025-11-25 12:09:51,585 [wrapper] pilotpid: 435885
[2025-11-25 13:09:51] 2025-11-25 12:09:51,588 [wrapper] Pilot exit status: 0
[2025-11-25 13:09:51] 2025-11-25 12:09:51,595 [wrapper] pandaids: 6895334153
[2025-11-25 13:09:51] 2025-11-25 12:09:51,612 [wrapper] cleanup supervisor_pilot  435891 435886
[2025-11-25 13:09:51] 2025-11-25 12:09:51,615 [wrapper] Test setup, not cleaning
[2025-11-25 13:09:51] 2025-11-25 12:09:51,618 [wrapper] apfmon messages muted
[2025-11-25 13:09:51] 2025-11-25 12:09:51,620 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:09:51] 2025-11-25 12:09:51,623 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:09:51]  *** Error codes and diagnostics ***
[2025-11-25 13:09:51]     "exeErrorCode": 65,
[2025-11-25 13:09:51]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 13:09:51]     "pilotErrorCode": 1305,
[2025-11-25 13:09:51]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 13:09:51]  *** Listing of results directory ***
[2025-11-25 13:09:51] total 404260
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc    576529 Nov 22 03:56 pilot3.tar.gz
[2025-11-25 13:09:51] -rwx------ 1 boinc boinc     36292 Nov 22 04:06 runpilot2-wrapper.sh
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc      5112 Nov 22 04:07 queuedata.json
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc       100 Nov 25 13:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:09:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 13:05 run_atlas
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc       105 Nov 25 13:05 job.xml
[2025-11-25 13:09:51] -rw-r--r-- 2 boinc boinc 409768931 Nov 25 13:05 EVNT.47483658._000229.pool.root.1
[2025-11-25 13:09:51] -rw-r--r-- 2 boinc boinc    590102 Nov 25 13:05 input.tar.gz
[2025-11-25 13:09:51] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:05 start_atlas.sh
[2025-11-25 13:09:51] drwxrwx--x 2 boinc boinc      4096 Nov 25 13:05 shared
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:05 boinc_setup_complete
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc      6196 Nov 25 13:05 init_data.xml
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:05 boinc_lockfile
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc      2785 Nov 25 13:05 pandaJob.out
[2025-11-25 13:09:51] -rw------- 1 boinc boinc    991894 Nov 25 13:05 agis_schedconf.cvmfs.json
[2025-11-25 13:09:51] -rw------- 1 boinc boinc   1516240 Nov 25 13:05 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:09:51] drwx------ 5 boinc boinc      4096 Nov 25 13:05 pilot3
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc       523 Nov 25 13:06 boinc_task_state.xml
[2025-11-25 13:09:51] -rw------- 1 boinc boinc       991 Nov 25 13:06 memory_monitor_summary.json
[2025-11-25 13:09:51] -rw------- 1 boinc boinc     56192 Nov 25 13:06 log.47556137._002253.job.log.tgz.1
[2025-11-25 13:09:51] -rw------- 1 boinc boinc        95 Nov 25 13:08 pilot_heartbeat.json
[2025-11-25 13:09:51] -rw------- 1 boinc boinc      8394 Nov 25 13:08 heartbeat.json
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc        23 Nov 25 13:09 wrapper_checkpoint.txt
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc      8192 Nov 25 13:09 boinc_mmap_file
[2025-11-25 13:09:51] -rw------- 1 boinc boinc      4556 Nov 25 13:09 pilotlog.txt
[2025-11-25 13:09:51] -rw------- 1 boinc boinc     91585 Nov 25 13:09 log.47556137._002253.job.log.1
[2025-11-25 13:09:51] -rw------- 1 boinc boinc       186 Nov 25 13:09 output.list
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc       620 Nov 25 13:09 runtime_log
[2025-11-25 13:09:51] -rw------- 1 boinc boinc    163840 Nov 25 13:09 result.tar.gz
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc      8744 Nov 25 13:09 runtime_log.err
[2025-11-25 13:09:51] -rw------- 1 boinc boinc       649 Nov 25 13:09 KGiMDms8sg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBvHKDmM20qem.diag
[2025-11-25 13:09:51] -rw-r--r-- 1 boinc boinc      9069 Nov 25 13:09 stderr.txt
[2025-11-25 13:09:51] No HITS result produced
[2025-11-25 13:09:51]  *** Contents of shared directory: ***
[2025-11-25 13:09:51] total 400928
[2025-11-25 13:09:51] -rw-r--r-- 2 boinc boinc 409768931 Nov 25 13:05 ATLAS.root_0
[2025-11-25 13:09:51] -rw-r--r-- 2 boinc boinc    590102 Nov 25 13:05 input.tar.gz
[2025-11-25 13:09:51] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:05 start_atlas.sh
[2025-11-25 13:09:51] -rw------- 1 boinc boinc    163840 Nov 25 13:09 result.tar.gz
13:09:52 (432154): run_atlas exited; CPU time 31.026247
13:09:52 (432154): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN