Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:55:47 (1465975): wrapper (7.7.26015): starting
05:55:47 (1465975): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 05:55:47] Arguments: --nthreads 3
[2025-11-28 05:55:47] Threads: 3
[2025-11-28 05:55:47] Checking for CVMFS
[2025-11-28 05:55:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 05:55:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 05:55:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 05:55:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 05:55:48] 2.9.2.0 3836662 13693 95740 153397 1 81 34571807 36864000 0 130560 5 5094030 99.943 670030 567 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 05:55:48] CVMFS is ok
[2025-11-28 05:55:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 05:55:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 05:55:48] Further information can be found at the LHC@home message board.
[2025-11-28 05:55:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 05:55:48] Checking for apptainer binary...
[2025-11-28 05:55:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 05:55:48] Running /usr/bin/apptainer --version
[2025-11-28 05:55:48] apptainer version 1.4.1-1.1
[2025-11-28 05:55:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 05:55:48] thA327
[2025-11-28 05:55:48] apptainer works
[2025-11-28 05:55:48] Set ATHENA_PROC_NUMBER=3
[2025-11-28 05:55:48] Set ATHENA_CORE_NUMBER=3
[2025-11-28 05:55:48] Starting ATLAS job with PandaID=6895651776
[2025-11-28 05:55:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 14:05:37]  *** The last 200 lines of the pilot log: ***
[2025-11-28 14:05:37] 2025-11-28 13:04:42,424 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 14:05:37] 2025-11-28 13:04:42,424 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 14:05:37] 2025-11-28 13:04:42,426 | INFO     | did not find any defunct processes belonging to 1476142
[2025-11-28 14:05:37] 2025-11-28 13:04:42,427 | INFO     | did not find any defunct processes belonging to 1476142
[2025-11-28 14:05:37] 2025-11-28 13:04:42,427 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 14:05:37] 2025-11-28 13:04:42,427 | INFO     | ready for new job
[2025-11-28 14:05:37] 2025-11-28 13:04:42,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 14:05:37] 2025-11-28 13:04:42,428 | INFO     | ***************************************
[2025-11-28 14:05:37] 2025-11-28 13:04:42,428 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 14:05:37] 2025-11-28 13:04:42,428 | INFO     | ***************************************
[2025-11-28 14:05:37] 2025-11-28 13:04:42,428 | INFO     | 
[2025-11-28 14:05:37] 2025-11-28 13:04:42,429 | INFO     | architecture information:
[2025-11-28 14:05:37] 2025-11-28 13:04:42,429 | INFO     | executing command: cat /etc/os-release
[2025-11-28 14:05:37] 2025-11-28 13:04:42,438 | INFO     | cat /etc/os-release:
[2025-11-28 14:05:37] NAME="CentOS Linux"
[2025-11-28 14:05:37] VERSION="7 (Core)"
[2025-11-28 14:05:37] ID="centos"
[2025-11-28 14:05:37] ID_LIKE="rhel fedora"
[2025-11-28 14:05:37] VERSION_ID="7"
[2025-11-28 14:05:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 14:05:37] ANSI_COLOR="0;31"
[2025-11-28 14:05:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 14:05:37] HOME_URL="https://www.centos.org/"
[2025-11-28 14:05:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 14:05:37] 
[2025-11-28 14:05:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 14:05:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 14:05:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 14:05:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 14:05:37] 
[2025-11-28 14:05:37] 2025-11-28 13:04:42,438 | INFO     | ***************************************
[2025-11-28 14:05:37] 2025-11-28 13:04:42,941 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 14:05:37] 2025-11-28 13:04:42,953 | INFO     | sufficient remaining disk space (366824390656 B)
[2025-11-28 14:05:37] 2025-11-28 13:04:42,953 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 14:05:37] 2025-11-28 13:04:42,954 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 14:05:37] 2025-11-28 13:04:42,954 | INFO     | update_server=False
[2025-11-28 14:05:37] 2025-11-28 13:04:42,954 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 14:05:37] 2025-11-28 13:04:42,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:05:37] 2025-11-28 13:04:42,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:05:37] 2025-11-28 13:04:42,954 | INFO     | aborting loop
[2025-11-28 14:05:37] 2025-11-28 13:04:43,040 | INFO     | all data control threads have been joined
[2025-11-28 14:05:37] 2025-11-28 13:04:43,301 | INFO     | all payload control threads have been joined
[2025-11-28 14:05:37] 2025-11-28 13:04:43,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 14:05:37] 2025-11-28 13:04:43,649 | INFO     | all job control threads have been joined
[2025-11-28 14:05:37] 2025-11-28 13:04:43,959 | INFO     | [job] queue monitor thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:43,959 | INFO     | [job] retrieve thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:43,960 | INFO     | [job] job monitor thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:43,971 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:43,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:44,046 | INFO     | [data] control thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:44,306 | INFO     | [payload] control thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:44,655 | INFO     | [job] control thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:44,696 | INFO     | [payload] failed_post thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:44,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 14:05:37] 2025-11-28 13:04:44,848 | INFO     | [data] copytool_in thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:45,204 | INFO     | [payload] validate_post thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:45,347 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:45,362 | INFO     | [job] validate thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:45,410 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:45,631 | INFO     | [data] copytool_out thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:04:48,837 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 14:05:37] 2025-11-28 13:05:13,436 | INFO     | PID=1469703 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 14:05:37] 2025-11-28 13:05:13,436 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 14:05:37] 2025-11-28 13:05:13,437 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 14:05:37] 2025-11-28 13:05:13,437 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 14:05:37] 2025-11-28 13:05:31,529 | INFO     | [monitor] cgroup control has ended
[2025-11-28 14:05:37] 2025-11-28 13:05:31,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159409317696)>', '<ExcThread(monitor, started 140158405965568)>']
[2025-11-28 14:05:37] 2025-11-28 13:05:32,538 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 14:05:37] 2025-11-28 13:05:32,539 | INFO     | [monitor] control thread has ended
[2025-11-28 14:05:37] 2025-11-28 13:05:36,945 | INFO     | all workflow threads have been joined
[2025-11-28 14:05:37] 2025-11-28 13:05:36,946 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 14:05:37] 2025-11-28 13:05:36,946 | INFO     | traces error code: 0
[2025-11-28 14:05:37] 2025-11-28 13:05:36,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 14:05:37] 2025-11-28 13:05:36,996 [wrapper] ==== pilot stdout END ====
[2025-11-28 14:05:37] 2025-11-28 13:05:36,998 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 14:05:37] 2025-11-28 13:05:37,000 [wrapper] pilotpid: 1469703
[2025-11-28 14:05:37] 2025-11-28 13:05:37,003 [wrapper] Pilot exit status: 0
[2025-11-28 14:05:37] 2025-11-28 13:05:37,010 [wrapper] pandaids: 6895651776
[2025-11-28 14:05:37] 2025-11-28 13:05:37,026 [wrapper] cleanup supervisor_pilot 1527015 1469704
[2025-11-28 14:05:37] 2025-11-28 13:05:37,028 [wrapper] Test setup, not cleaning
[2025-11-28 14:05:37] 2025-11-28 13:05:37,031 [wrapper] apfmon messages muted
[2025-11-28 14:05:37] 2025-11-28 13:05:37,033 [wrapper] ==== wrapper stdout END ====
[2025-11-28 14:05:37] 2025-11-28 13:05:37,035 [wrapper] ==== wrapper stderr END ====
[2025-11-28 14:05:37]  *** Error codes and diagnostics ***
[2025-11-28 14:05:37]     "exeErrorCode": 0,
[2025-11-28 14:05:37]     "exeErrorDiag": "",
[2025-11-28 14:05:37]     "pilotErrorCode": 0,
[2025-11-28 14:05:37]     "pilotErrorDiag": "",
[2025-11-28 14:05:37]  *** Listing of results directory ***
[2025-11-28 14:05:37] total 1313300
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc    576529 Nov 24 13:18 pilot3.tar.gz
[2025-11-28 14:05:37] -rwx------ 1 boinc boinc     36292 Nov 24 13:51 runpilot2-wrapper.sh
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc      5112 Nov 24 13:51 queuedata.json
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc       100 Nov 28 05:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 14:05:37] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 05:55 run_atlas
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc       105 Nov 28 05:55 job.xml
[2025-11-28 14:05:37] -rw-r--r-- 2 boinc boinc 410440792 Nov 28 05:55 EVNT.47483658._001338.pool.root.1
[2025-11-28 14:05:37] -rw-r--r-- 2 boinc boinc    590104 Nov 28 05:55 input.tar.gz
[2025-11-28 14:05:37] -rw-r--r-- 2 boinc boinc     15847 Nov 28 05:55 start_atlas.sh
[2025-11-28 14:05:37] drwxrwx--x 2 boinc boinc      4096 Nov 28 05:55 shared
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:55 boinc_setup_complete
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc      6447 Nov 28 05:55 init_data.xml
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:55 boinc_lockfile
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc      2786 Nov 28 05:55 pandaJob.out
[2025-11-28 14:05:37] -rw------- 1 boinc boinc    991858 Nov 28 05:55 agis_schedconf.cvmfs.json
[2025-11-28 14:05:37] drwx------ 5 boinc boinc      4096 Nov 28 05:55 pilot3
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc       531 Nov 28 14:01 boinc_task_state.xml
[2025-11-28 14:05:37] -rw------- 1 boinc boinc 919865384 Nov 28 14:04 HITS.47556149._003250.pool.root.1
[2025-11-28 14:05:37] -rw------- 1 boinc boinc        95 Nov 28 14:04 pilot_heartbeat.json
[2025-11-28 14:05:37] -rw------- 1 boinc boinc      1023 Nov 28 14:04 memory_monitor_summary.json
[2025-11-28 14:05:37] -rw------- 1 boinc boinc   1516240 Nov 28 14:04 agis_ddmendpoints.agis.ALL.json
[2025-11-28 14:05:37] -rw------- 1 boinc boinc   1172585 Nov 28 14:04 log.47556149._003250.job.log.tgz.1
[2025-11-28 14:05:37] -rw------- 1 boinc boinc      8552 Nov 28 14:04 heartbeat.json
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc      8192 Nov 28 14:05 boinc_mmap_file
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc        28 Nov 28 14:05 wrapper_checkpoint.txt
[2025-11-28 14:05:37] -rw------- 1 boinc boinc      4752 Nov 28 14:05 pilotlog.txt
[2025-11-28 14:05:37] -rw------- 1 boinc boinc   4129364 Nov 28 14:05 log.47556149._003250.job.log.1
[2025-11-28 14:05:37] -rw------- 1 boinc boinc       353 Nov 28 14:05 output.list
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc       620 Nov 28 14:05 runtime_log
[2025-11-28 14:05:37] -rw------- 1 boinc boinc   5324800 Nov 28 14:05 result.tar.gz
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc      8898 Nov 28 14:05 runtime_log.err
[2025-11-28 14:05:37] -rw------- 1 boinc boinc       665 Nov 28 14:05 6YsKDm5Dlh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUgLKDm75M6Pn.diag
[2025-11-28 14:05:37] -rw-r--r-- 1 boinc boinc     10193 Nov 28 14:05 stderr.txt
[2025-11-28 14:05:37] HITS file was successfully produced:
[2025-11-28 14:05:37] -rw------- 1 boinc boinc 919865384 Nov 28 14:04 shared/HITS.pool.root.1
[2025-11-28 14:05:37]  *** Contents of shared directory: ***
[2025-11-28 14:05:37] total 1304932
[2025-11-28 14:05:37] -rw-r--r-- 2 boinc boinc 410440792 Nov 28 05:55 ATLAS.root_0
[2025-11-28 14:05:37] -rw-r--r-- 2 boinc boinc    590104 Nov 28 05:55 input.tar.gz
[2025-11-28 14:05:37] -rw-r--r-- 2 boinc boinc     15847 Nov 28 05:55 start_atlas.sh
[2025-11-28 14:05:37] -rw------- 1 boinc boinc 919865384 Nov 28 14:04 HITS.pool.root.1
[2025-11-28 14:05:37] -rw------- 1 boinc boinc   5324800 Nov 28 14:05 result.tar.gz
14:05:38 (1465975): run_atlas exited; CPU time 86627.071877
14:05:38 (1465975): called boinc_finish(0)

</stderr_txt>
]]>

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