Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:23:57 (515420): wrapper (7.7.26015): starting
13:23:57 (515420): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 13:23:57] Arguments: --nthreads 3
[2025-11-25 13:23:57] Threads: 3
[2025-11-25 13:23:57] Checking for CVMFS
[2025-11-25 13:23:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:23:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:23:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:23:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:23:57] 2.9.2.0 411005 22 52712 153281 1 88 35171650 36864001 0 130560 0 313031 100.000 3 28 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 13:23:57] CVMFS is ok
[2025-11-25 13:23:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:23:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:23:57] Further information can be found at the LHC@home message board.
[2025-11-25 13:23:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:23:57] Checking for apptainer binary...
[2025-11-25 13:23:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:23:57] Running /usr/bin/apptainer --version
[2025-11-25 13:23:57] apptainer version 1.4.1-1.1
[2025-11-25 13:23:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:23:58] thA335
[2025-11-25 13:23:58] apptainer works
[2025-11-25 13:23:58] Set ATHENA_PROC_NUMBER=3
[2025-11-25 13:23:58] Set ATHENA_CORE_NUMBER=3
[2025-11-25 13:23:58] Starting ATLAS job with PandaID=6895651784
[2025-11-25 13:23:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:28:17]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:28:17] 2025-11-25 12:27:24,335 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:28:17] 2025-11-25 12:27:24,345 | INFO     | cat /etc/os-release:
[2025-11-25 13:28:17] NAME="CentOS Linux"
[2025-11-25 13:28:17] VERSION="7 (Core)"
[2025-11-25 13:28:17] ID="centos"
[2025-11-25 13:28:17] ID_LIKE="rhel fedora"
[2025-11-25 13:28:17] VERSION_ID="7"
[2025-11-25 13:28:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:28:17] ANSI_COLOR="0;31"
[2025-11-25 13:28:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:28:17] HOME_URL="https://www.centos.org/"
[2025-11-25 13:28:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:28:17] 
[2025-11-25 13:28:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:28:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:28:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:28:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:28:17] 
[2025-11-25 13:28:17] 2025-11-25 12:27:24,346 | INFO     | ***************************************
[2025-11-25 13:28:17] 2025-11-25 12:27:24,849 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 13:28:17] 2025-11-25 12:27:24,863 | INFO     | sufficient remaining disk space (826861944832 B)
[2025-11-25 13:28:17] 2025-11-25 12:27:24,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:28:17] 2025-11-25 12:27:24,863 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:28:17] 2025-11-25 12:27:24,863 | INFO     | update_server=False
[2025-11-25 13:28:17] 2025-11-25 12:27:24,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:28:17] 2025-11-25 12:27:24,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:28:17] 2025-11-25 12:27:24,863 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:28:17] 2025-11-25 12:27:24,863 | INFO     | aborting loop
[2025-11-25 13:28:17] 2025-11-25 12:27:25,069 | INFO     | all job control threads have been joined
[2025-11-25 13:28:17] 2025-11-25 12:27:25,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:28:17] 2025-11-25 12:27:25,868 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:25,868 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:25,869 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:25,900 | INFO     | all data control threads have been joined
[2025-11-25 13:28:17] 2025-11-25 12:27:26,002 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:26,057 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:26,075 | INFO     | [job] control thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:26,202 | INFO     | all payload control threads have been joined
[2025-11-25 13:28:17] 2025-11-25 12:27:26,744 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:26,767 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:26,846 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:26,906 | INFO     | [data] control thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:27,112 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:27,209 | INFO     | [payload] control thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:27,226 | INFO     | [job] validate thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:27,315 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:27,367 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:27,908 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:28:17] 2025-11-25 12:27:31,915 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:28:17] 2025-11-25 12:27:55,327 | INFO     | PID=519157 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 13:28:17] 2025-11-25 12:27:55,328 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:28:17] 2025-11-25 12:27:55,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:28:17] 2025-11-25 12:27:55,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:28:17] 2025-11-25 12:28:10,511 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:28:17] 2025-11-25 12:28:11,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139789922158400)>', '<ExcThread(monitor, started 139789416253184)>']
[2025-11-25 13:28:17] 2025-11-25 12:28:12,418 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:28:17] 2025-11-25 12:28:12,418 | INFO     | [monitor] control thread has ended
[2025-11-25 13:28:17] 2025-11-25 12:28:16,689 | INFO     | all workflow threads have been joined
[2025-11-25 13:28:17] 2025-11-25 12:28:16,689 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:28:17] 2025-11-25 12:28:16,690 | INFO     | traces error code: 0
[2025-11-25 13:28:17] 2025-11-25 12:28:16,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:28:17] 2025-11-25 12:28:16,736 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:28:17] 2025-11-25 12:28:16,739 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:28:17] 2025-11-25 12:28:16,743 [wrapper] pilotpid: 519157
[2025-11-25 13:28:17] 2025-11-25 12:28:16,746 [wrapper] Pilot exit status: 0
[2025-11-25 13:28:17] 2025-11-25 12:28:16,752 [wrapper] pandaids: 6895651784
[2025-11-25 13:28:17] 2025-11-25 12:28:16,769 [wrapper] cleanup supervisor_pilot  519163 519158
[2025-11-25 13:28:17] 2025-11-25 12:28:16,772 [wrapper] Test setup, not cleaning
[2025-11-25 13:28:17] 2025-11-25 12:28:16,775 [wrapper] apfmon messages muted
[2025-11-25 13:28:17] 2025-11-25 12:28:16,778 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:28:17] 2025-11-25 12:28:16,780 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:28:17]  *** Error codes and diagnostics ***
[2025-11-25 13:28:17]     "exeErrorCode": 65,
[2025-11-25 13:28:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 13:28:17]     "pilotErrorCode": 1305,
[2025-11-25 13:28:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 13:28:17]  *** Listing of results directory ***
[2025-11-25 13:28:17] total 403348
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc    576529 Nov 24 13:18 pilot3.tar.gz
[2025-11-25 13:28:17] -rwx------ 1 boinc boinc     36292 Nov 24 13:51 runpilot2-wrapper.sh
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc      5112 Nov 24 13:51 queuedata.json
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc       100 Nov 25 13:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:28:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 13:23 run_atlas
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc       105 Nov 25 13:23 job.xml
[2025-11-25 13:28:17] -rw-r--r-- 2 boinc boinc 408835570 Nov 25 13:23 EVNT.47483658._001339.pool.root.1
[2025-11-25 13:28:17] -rw-r--r-- 2 boinc boinc    590103 Nov 25 13:23 input.tar.gz
[2025-11-25 13:28:17] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:23 start_atlas.sh
[2025-11-25 13:28:17] drwxrwx--x 2 boinc boinc      4096 Nov 25 13:23 shared
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:23 boinc_setup_complete
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc      6196 Nov 25 13:23 init_data.xml
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:23 boinc_lockfile
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc      2785 Nov 25 13:23 pandaJob.out
[2025-11-25 13:28:17] -rw------- 1 boinc boinc    991894 Nov 25 13:24 agis_schedconf.cvmfs.json
[2025-11-25 13:28:17] -rw------- 1 boinc boinc   1516240 Nov 25 13:24 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:28:17] drwx------ 5 boinc boinc      4096 Nov 25 13:24 pilot3
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc       523 Nov 25 13:25 boinc_task_state.xml
[2025-11-25 13:28:17] -rw------- 1 boinc boinc       981 Nov 25 13:25 memory_monitor_summary.json
[2025-11-25 13:28:17] -rw------- 1 boinc boinc     55673 Nov 25 13:25 log.47556149._003258.job.log.tgz.1
[2025-11-25 13:28:17] -rw------- 1 boinc boinc        95 Nov 25 13:27 pilot_heartbeat.json
[2025-11-25 13:28:17] -rw------- 1 boinc boinc      8386 Nov 25 13:27 heartbeat.json
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc      8192 Nov 25 13:27 boinc_mmap_file
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc        23 Nov 25 13:27 wrapper_checkpoint.txt
[2025-11-25 13:28:17] -rw------- 1 boinc boinc      4751 Nov 25 13:28 pilotlog.txt
[2025-11-25 13:28:17] -rw------- 1 boinc boinc     91843 Nov 25 13:28 log.47556149._003258.job.log.1
[2025-11-25 13:28:17] -rw------- 1 boinc boinc       186 Nov 25 13:28 output.list
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc       620 Nov 25 13:28 runtime_log
[2025-11-25 13:28:17] -rw------- 1 boinc boinc    163840 Nov 25 13:28 result.tar.gz
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc      8744 Nov 25 13:28 runtime_log.err
[2025-11-25 13:28:17] -rw------- 1 boinc boinc       649 Nov 25 13:28 5EyKDm5Dlh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYgLKDmd9u6Un.diag
[2025-11-25 13:28:17] -rw-r--r-- 1 boinc boinc      9247 Nov 25 13:28 stderr.txt
[2025-11-25 13:28:17] No HITS result produced
[2025-11-25 13:28:17]  *** Contents of shared directory: ***
[2025-11-25 13:28:17] total 400016
[2025-11-25 13:28:17] -rw-r--r-- 2 boinc boinc 408835570 Nov 25 13:23 ATLAS.root_0
[2025-11-25 13:28:17] -rw-r--r-- 2 boinc boinc    590103 Nov 25 13:23 input.tar.gz
[2025-11-25 13:28:17] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:23 start_atlas.sh
[2025-11-25 13:28:17] -rw------- 1 boinc boinc    163840 Nov 25 13:28 result.tar.gz
13:28:18 (515420): run_atlas exited; CPU time 30.716529
13:28:18 (515420): called boinc_finish(0)

</stderr_txt>
]]>

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