Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:54:07 (14164): wrapper (7.7.26015): starting
06:54:07 (14164): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 06:54:07] Arguments: --nthreads 8
[2025-11-25 06:54:07] Threads: 8
[2025-11-25 06:54:07] Checking for CVMFS
[2025-11-25 06:54:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 06:54:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 06:54:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 06:54:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 06:54:07] 2.11.2.0 14221 116193 134112 153281 0 82 9910272 18432000 1885 130560 0 85743681 99.975 4838973 30646 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 06:54:07] CVMFS is ok
[2025-11-25 06:54:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 06:54:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 06:54:07] Further information can be found at the LHC@home message board.
[2025-11-25 06:54:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 06:54:07] Checking for apptainer binary...
[2025-11-25 06:54:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 06:54:07] Running /usr/bin/apptainer --version
[2025-11-25 06:54:07] apptainer version 1.3.2-1.el7
[2025-11-25 06:54:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 06:54:08] c-206-9.aglt2.org
[2025-11-25 06:54:08] apptainer works
[2025-11-25 06:54:08] Set ATHENA_PROC_NUMBER=8
[2025-11-25 06:54:08] Set ATHENA_CORE_NUMBER=8
[2025-11-25 06:54:08] Starting ATLAS job with PandaID=6894238208
[2025-11-25 06:54:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:12:20 (18921): wrapper (7.7.26015): starting
01:12:20 (18921): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 01:12:20] Arguments: --nthreads 8
[2025-11-26 01:12:20] Threads: 8
[2025-11-26 01:12:20] This job has been restarted, cleaning up previous attempt
[2025-11-26 01:12:20] Checking for CVMFS
[2025-11-26 01:12:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:12:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:12:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:12:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:12:20] 2.11.2.0 14221 117291 133816 153311 2 90 10078460 18432001 1 130560 0 86694731 99.975 4882600 30680 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 01:12:20] CVMFS is ok
[2025-11-26 01:12:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 01:12:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 01:12:20] Further information can be found at the LHC@home message board.
[2025-11-26 01:12:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:12:20] Checking for apptainer binary...
[2025-11-26 01:12:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:12:20] Running /usr/bin/apptainer --version
[2025-11-26 01:12:20] apptainer version 1.3.2-1.el7
[2025-11-26 01:12:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:12:21] c-206-9.aglt2.org
[2025-11-26 01:12:21] apptainer works
[2025-11-26 01:12:21] Set ATHENA_PROC_NUMBER=8
[2025-11-26 01:12:21] Set ATHENA_CORE_NUMBER=8
[2025-11-26 01:12:21] Starting ATLAS job with PandaID=6894238208
[2025-11-26 01:12:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:15:34]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:15:34] 2025-11-27 01:14:55,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:15:34] 2025-11-27 01:14:56,352 | INFO     | time since job start (68541s) is within the limit (172800.0s)
[2025-11-26 20:15:34] 2025-11-27 01:14:56,684 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 20:15:34] 2025-11-27 01:14:56,690 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2477.875
[2025-11-26 20:15:34] 2025-11-27 01:14:56,694 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894238208/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:15:34] 2025-11-27 01:14:56,695 | INFO     | extracted standard info from prmon json
[2025-11-26 20:15:34] 2025-11-27 01:14:56,695 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:15:34] 2025-11-27 01:14:56,696 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:15:34] 2025-11-27 01:14:56,725 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:15:34] 2025-11-27 01:14:56,727 | INFO     | sum of square deviations: 440328931749.40564
[2025-11-26 20:15:34] 2025-11-27 01:14:56,767 | INFO     | sum of deviations: 2115305816725.7754
[2025-11-26 20:15:34] 2025-11-27 01:14:56,767 | INFO     | mean x: 1764171833.0480428
[2025-11-26 20:15:34] 2025-11-27 01:14:56,768 | INFO     | mean y: 2859210.6708185053
[2025-11-26 20:15:34] 2025-11-27 01:14:56,768 | INFO     | intersect: -8472084566.755261
[2025-11-26 20:15:34] 2025-11-27 01:14:56,769 | INFO     | chi2: 5.812586518968196
[2025-11-26 20:15:34] 2025-11-27 01:14:56,771 | INFO     | sum of square deviations: 434478944822.8971
[2025-11-26 20:15:34] 2025-11-27 01:14:56,811 | INFO     | sum of deviations: 2462373912014.7734
[2025-11-26 20:15:34] 2025-11-27 01:14:56,811 | INFO     | mean x: 1764171680.5504916
[2025-11-26 20:15:34] 2025-11-27 01:14:56,811 | INFO     | mean y: 2868253.6854334227
[2025-11-26 20:15:34] 2025-11-27 01:14:56,811 | INFO     | intersect: -9995430568.996338
[2025-11-26 20:15:34] 2025-11-27 01:14:56,813 | INFO     | chi2: 2.994003510924542
[2025-11-26 20:15:34] 2025-11-27 01:14:56,813 | INFO     | current chi2=2.994003510924542 (change=48.491028887841594 %)
[2025-11-26 20:15:34] 2025-11-27 01:14:56,814 | INFO     | sum of square deviations: 428681005383.8748
[2025-11-26 20:15:34] 2025-11-27 01:14:56,842 | INFO     | sum of deviations: 2605090163566.268
[2025-11-26 20:15:34] 2025-11-27 01:14:56,843 | INFO     | mean x: 1764171528.0529623
[2025-11-26 20:15:34] 2025-11-27 01:14:56,843 | INFO     | mean y: 2872006.55475763
[2025-11-26 20:15:34] 2025-11-27 01:14:56,843 | INFO     | intersect: -10717980648.11087
[2025-11-26 20:15:34] 2025-11-27 01:14:56,844 | INFO     | chi2: 2.418631499778832
[2025-11-26 20:15:34] 2025-11-27 01:14:56,844 | INFO     | current chi2=2.418631499778832 (change=19.21747950683051 %)
[2025-11-26 20:15:34] 2025-11-27 01:14:56,844 | INFO     | right removable region: 1113
[2025-11-26 20:15:34] 2025-11-27 01:14:56,845 | INFO     | sum of square deviations: 434478569062.89716
[2025-11-26 20:15:34] 2025-11-27 01:14:56,867 | INFO     | sum of deviations: 1840240180779.702
[2025-11-26 20:15:34] 2025-11-27 01:14:56,867 | INFO     | mean x: 1764171985.5504916
[2025-11-26 20:15:34] 2025-11-27 01:14:56,867 | INFO     | mean y: 2866371.18230563
[2025-11-26 20:15:34] 2025-11-27 01:14:56,868 | INFO     | intersect: -7469309254.460449
[2025-11-26 20:15:34] 2025-11-27 01:14:56,869 | INFO     | chi2: 3.860911562091941
[2025-11-26 20:15:34] 2025-11-27 01:14:56,869 | INFO     | current chi2=3.860911562091941 (change=33.57670377047051 %)
[2025-11-26 20:15:34] 2025-11-27 01:14:56,871 | INFO     | sum of square deviations: 428680390504.08417
[2025-11-26 20:15:34] 2025-11-27 01:14:56,898 | INFO     | sum of deviations: 1744257120649.125
[2025-11-26 20:15:34] 2025-11-27 01:14:56,898 | INFO     | mean x: 1764172138.051167
[2025-11-26 20:15:34] 2025-11-27 01:14:56,898 | INFO     | mean y: 2868895.366247756
[2025-11-26 20:15:34] 2025-11-27 01:14:56,899 | INFO     | intersect: -7175368976.042106
[2025-11-26 20:15:34] 2025-11-27 01:14:56,900 | INFO     | chi2: 3.750264523982164
[2025-11-26 20:15:34] 2025-11-27 01:14:56,900 | INFO     | current chi2=3.750264523982164 (change=2.865826795831238 %)
[2025-11-26 20:15:34] 2025-11-27 01:14:56,900 | INFO     | left removable region: 20
[2025-11-26 20:15:34] 2025-11-27 01:14:56,901 | INFO     | sum of square deviations: 404891806033.7897
[2025-11-26 20:15:34] 2025-11-27 01:14:56,922 | INFO     | sum of deviations: 2104498739710.5667
[2025-11-26 20:15:34] 2025-11-27 01:14:56,922 | INFO     | mean x: 1764172107.5562673
[2025-11-26 20:15:34] 2025-11-27 01:14:56,922 | INFO     | mean y: 2886143.129002745
[2025-11-26 20:15:34] 2025-11-27 01:14:56,922 | INFO     | intersect: -9166718975.219233
[2025-11-26 20:15:34] 2025-11-27 01:14:56,923 | INFO     | chi2: 0.22351113026839334
[2025-11-26 20:15:34] 2025-11-27 01:14:56,924 | INFO     | current memory leak: 5.20 B/s (using 1093 data points, chi2=0.22)
[2025-11-26 20:15:34] 2025-11-27 01:14:56,924 | INFO     | could have reported an average CPU frequency of 2582 MHz (41 samples)
[2025-11-26 20:15:34] 2025-11-27 01:14:56,924 | INFO     | ..............................
[2025-11-26 20:15:34] 2025-11-27 01:14:56,925 | INFO     | . Timing measurements:
[2025-11-26 20:15:34] 2025-11-27 01:14:56,925 | INFO     | . get job = 0 s
[2025-11-26 20:15:34] 2025-11-27 01:14:56,925 | INFO     | . initial setup = 2 s
[2025-11-26 20:15:34] 2025-11-27 01:14:56,925 | INFO     | . payload setup = 6 s
[2025-11-26 20:15:34] 2025-11-27 01:14:56,925 | INFO     | . stage-in = 0 s
[2025-11-26 20:15:34] 2025-11-27 01:14:56,925 | INFO     | . payload execution = 68508 s
[2025-11-26 20:15:34] 2025-11-27 01:14:56,925 | INFO     | . stage-out = 4 s
[2025-11-26 20:15:34] 2025-11-27 01:14:56,925 | INFO     | . log creation = 0 s
[2025-11-26 20:15:34] 2025-11-27 01:14:56,925 | INFO     | ..............................
[2025-11-26 20:15:34] 2025-11-27 01:14:57,017 | INFO     | 
[2025-11-26 20:15:34] 2025-11-27 01:14:57,018 | INFO     | job summary report
[2025-11-26 20:15:34] 2025-11-27 01:14:57,018 | INFO     | --------------------------------------------------
[2025-11-26 20:15:34] 2025-11-27 01:14:57,018 | INFO     | PanDA job id: 6894238208
[2025-11-26 20:15:34] 2025-11-27 01:14:57,018 | INFO     | task id: 47533962
[2025-11-26 20:15:34] 2025-11-27 01:14:57,018 | INFO     | errors: (none)
[2025-11-26 20:15:34] 2025-11-27 01:14:57,019 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:15:34] 2025-11-27 01:14:57,019 | INFO     | pilot state: finished 
[2025-11-26 20:15:34] 2025-11-27 01:14:57,019 | INFO     | transexitcode: 0
[2025-11-26 20:15:34] 2025-11-27 01:14:57,019 | INFO     | exeerrorcode: 0
[2025-11-26 20:15:34] 2025-11-27 01:14:57,019 | INFO     | exeerrordiag: 
[2025-11-26 20:15:34] 2025-11-27 01:14:57,019 | INFO     | exitcode: 0
[2025-11-26 20:15:34] 2025-11-27 01:14:57,020 | INFO     | exitmsg: OK
[2025-11-26 20:15:34] 2025-11-27 01:14:57,020 | INFO     | cpuconsumptiontime: 535107 s
[2025-11-26 20:15:34] 2025-11-27 01:14:57,020 | INFO     | nevents: 1000
[2025-11-26 20:15:34] 2025-11-27 01:14:57,020 | INFO     | neventsw: 0
[2025-11-26 20:15:34] 2025-11-27 01:14:57,020 | INFO     | pid: 18786
[2025-11-26 20:15:34] 2025-11-27 01:14:57,020 | INFO     | pgrp: 18786
[2025-11-26 20:15:34] 2025-11-27 01:14:57,021 | INFO     | corecount: 8
[2025-11-26 20:15:34] 2025-11-27 01:14:57,021 | INFO     | event service: False
[2025-11-26 20:15:34] 2025-11-27 01:14:57,021 | INFO     | sizes: {0: 2284033, 1: 2284288, 5: 2284550, 12: 2284606, 68515: 2340525, 68519: 2349519, 68521: 2349703, 68526: 2350045}
[2025-11-26 20:15:34] 2025-11-27 01:14:57,021 | INFO     | --------------------------------------------------
[2025-11-26 20:15:34] 2025-11-27 01:14:57,021 | INFO     | 
[2025-11-26 20:15:34] 2025-11-27 01:14:57,022 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 20:15:34] 2025-11-27 01:14:57,040 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,040 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,041 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,041 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,041 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,041 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,041 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,041 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,042 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,042 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,042 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,042 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,042 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,043 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:15:34] 2025-11-27 01:14:57,043 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,044 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:15:34] 2025-11-27 01:14:57,044 | INFO     | job 6894238208 has completed (purged errors)
[2025-11-26 20:15:34] 2025-11-27 01:14:57,044 | INFO     | overall cleanup function is called
[2025-11-26 20:15:34] 2025-11-27 01:14:58,062 | INFO     | --- collectZombieJob: --- 10, [18786]
[2025-11-26 20:15:34] 2025-11-27 01:14:58,062 | INFO     | zombie collector waiting for pid 18786
[2025-11-26 20:15:34] 2025-11-27 01:14:58,062 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:15:34] 2025-11-27 01:14:58,062 | INFO     | collected zombie processes
[2025-11-26 20:15:34] 2025-11-27 01:14:58,062 | INFO     | will attempt to kill all subprocesses of pid=18786
[2025-11-26 20:15:34] 2025-11-27 01:14:58,184 | INFO     | process IDs to be killed: [18786] (in reverse order)
[2025-11-26 20:15:34] 2025-11-27 01:14:58,245 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:15:34] 2025-11-27 01:14:58,246 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:15:34] 2025-11-27 01:14:58,251 | INFO     | did not find any defunct processes belonging to 18786
[2025-11-26 20:15:34] 2025-11-27 01:14:58,257 | INFO     | did not find any defunct processes belonging to 18786
[2025-11-26 20:15:34] 2025-11-27 01:14:58,259 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:15:34] 2025-11-27 01:14:58,259 | INFO     | ready for new job
[2025-11-26 20:15:34] 2025-11-27 01:14:58,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:15:34] 2025-11-27 01:14:58,264 | INFO     | ***************************************
[2025-11-26 20:15:34] 2025-11-27 01:14:58,264 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:15:34] 2025-11-27 01:14:58,264 | INFO     | ***************************************
[2025-11-26 20:15:34] 2025-11-27 01:14:58,265 | INFO     | 
[2025-11-26 20:15:34] 2025-11-27 01:14:58,266 | INFO     | architecture information:
[2025-11-26 20:15:34] 2025-11-27 01:14:58,266 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:15:34] 2025-11-27 01:14:58,280 | INFO     | cat /etc/os-release:
[2025-11-26 20:15:34] NAME="CentOS Linux"
[2025-11-26 20:15:34] VERSION="7 (Core)"
[2025-11-26 20:15:34] ID="centos"
[2025-11-26 20:15:34] ID_LIKE="rhel fedora"
[2025-11-26 20:15:34] VERSION_ID="7"
[2025-11-26 20:15:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:15:34] ANSI_COLOR="0;31"
[2025-11-26 20:15:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:15:34] HOME_URL="https://www.centos.org/"
[2025-11-26 20:15:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:15:34] 
[2025-11-26 20:15:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:15:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:15:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:15:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:15:34] 
[2025-11-26 20:15:34] 2025-11-27 01:14:58,280 | INFO     | ***************************************
[2025-11-26 20:15:34] 2025-11-27 01:14:58,783 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 20:15:34] 2025-11-27 01:14:58,799 | INFO     | sufficient remaining disk space (24871174144 B)
[2025-11-26 20:15:34] 2025-11-27 01:14:58,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:15:34] 2025-11-27 01:14:58,800 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:15:34] 2025-11-27 01:14:58,800 | INFO     | update_server=False
[2025-11-26 20:15:34] 2025-11-27 01:14:58,800 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:15:34] 2025-11-27 01:14:58,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:15:34] 2025-11-27 01:14:58,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:15:34] 2025-11-27 01:14:58,801 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:15:34] 2025-11-27 01:14:59,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:15:34] 2025-11-27 01:14:59,070 | INFO     | aborting loop
[2025-11-26 20:15:34] 2025-11-27 01:14:59,391 | INFO     | all job control threads have been joined
[2025-11-26 20:15:34] 2025-11-27 01:14:59,556 | INFO     | all data control threads have been joined
[2025-11-26 20:15:34] 2025-11-27 01:14:59,805 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:14:59,806 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:00,075 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:00,133 | INFO     | all payload control threads have been joined
[2025-11-26 20:15:34] 2025-11-27 01:15:00,284 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:00,381 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:00,396 | INFO     | [job] control thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:00,415 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:00,443 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:00,561 | INFO     | [data] control thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:00,807 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:01,093 | INFO     | [job] validate thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:01,136 | INFO     | [payload] control thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:01,180 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:01,342 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:02,808 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:09,007 | INFO     | job.realtimelogging is not enabled
[2025-11-26 20:15:34] 2025-11-27 01:15:10,012 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:15:34] 2025-11-27 01:15:28,468 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:15:34] 2025-11-27 01:15:29,314 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638223624000)>', '<ExcThread(monitor, started 140636825057024)>']
[2025-11-26 20:15:34] 2025-11-27 01:15:29,582 | INFO     | PID=30009 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 20:15:34] 2025-11-27 01:15:29,582 | INFO     | .. there are 3 such processes running
[2025-11-26 20:15:34] 2025-11-27 01:15:29,582 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:15:34] 2025-11-27 01:15:29,583 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:15:34] 2025-11-27 01:15:29,583 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:15:34] 2025-11-27 01:15:29,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:15:34] 2025-11-27 01:15:29,583 | INFO     | [monitor] control thread has ended
[2025-11-26 20:15:34] 2025-11-27 01:15:34,340 | INFO     | all workflow threads have been joined
[2025-11-26 20:15:34] 2025-11-27 01:15:34,340 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:15:34] 2025-11-27 01:15:34,340 | INFO     | traces error code: 0
[2025-11-26 20:15:34] 2025-11-27 01:15:34,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:15:34] 2025-11-27 01:15:34,453 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:15:34] 2025-11-27 01:15:34,456 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:15:34] 2025-11-27 01:15:34,458 [wrapper] pilotpid: 30009
[2025-11-26 20:15:34] 2025-11-27 01:15:34,460 [wrapper] Pilot exit status: 0
[2025-11-26 20:15:34] 2025-11-27 01:15:34,468 [wrapper] pandaids: 6894238208 6894238208
[2025-11-26 20:15:34] 2025-11-27 01:15:34,507 [wrapper] cleanup supervisor_pilot 10692 30010
[2025-11-26 20:15:34] 2025-11-27 01:15:34,510 [wrapper] Test setup, not cleaning
[2025-11-26 20:15:34] 2025-11-27 01:15:34,512 [wrapper] apfmon messages muted
[2025-11-26 20:15:34] 2025-11-27 01:15:34,515 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:15:34] 2025-11-27 01:15:34,517 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:15:34]  *** Error codes and diagnostics ***
[2025-11-26 20:15:34]     "exeErrorCode": 0,
[2025-11-26 20:15:34]     "exeErrorDiag": "",
[2025-11-26 20:15:34]     "pilotErrorCode": 0,
[2025-11-26 20:15:34]     "pilotErrorDiag": "",
[2025-11-26 20:15:34]  *** Listing of results directory ***
[2025-11-26 20:15:34] total 1710240
[2025-11-26 20:15:34] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 07:18 pilot3.tar.gz
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 07:51 queuedata.json
[2025-11-26 20:15:34] -rwx------ 1 boincer umatlas     36292 Nov 24 07:52 runpilot2-wrapper.sh
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas       100 Nov 25 06:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:15:34] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 06:54 run_atlas
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas       105 Nov 25 06:54 job.xml
[2025-11-26 20:15:34] -rw-r--r-- 3 boincer umatlas 409656137 Nov 25 06:54 EVNT.47493127._001007.pool.root.1
[2025-11-26 20:15:34] -rw-r--r-- 3 boincer umatlas 409656137 Nov 25 06:54 ATLAS.root_0
[2025-11-26 20:15:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 06:54 start_atlas.sh
[2025-11-26 20:15:34] drwxrwx--x 2 boincer umatlas      4096 Nov 25 06:54 shared
[2025-11-26 20:15:34] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 06:54 input.tar.gz
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas         0 Nov 25 06:54 boinc_lockfile
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas      2783 Nov 26 01:12 pandaJob.out
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas        57 Nov 26 01:12 setup.sh.local
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas    991877 Nov 26 01:12 agis_schedconf.cvmfs.json
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas       535 Nov 26 20:02 boinc_task_state.xml
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas      5955 Nov 26 20:13 init_data.xml
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas 904398015 Nov 26 20:14 HITS.47533962._000068.pool.root.1
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas        96 Nov 26 20:14 pilot_heartbeat.json
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas      1063 Nov 26 20:14 memory_monitor_summary.json
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas   1516240 Nov 26 20:14 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas   2307762 Nov 26 20:14 log.47533962._000068.job.log.tgz.1
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas      8659 Nov 26 20:14 heartbeat.json
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 20:15 boinc_mmap_file
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas        31 Nov 26 20:15 wrapper_checkpoint.txt
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas      4893 Nov 26 20:15 pilotlog.txt
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas   9516740 Nov 26 20:15 log.47533962._000068.job.log.1
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas       353 Nov 26 20:15 output.list
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas       620 Nov 26 20:15 runtime_log
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas  11847680 Nov 26 20:15 result.tar.gz
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas      9423 Nov 26 20:15 runtime_log.err
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas       792 Nov 26 20:15 OOALDmCElh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDma3IKDmrRXXYm.diag
[2025-11-26 20:15:34] -rw-r--r-- 1 boincer umatlas     23419 Nov 26 20:15 stderr.txt
[2025-11-26 20:15:34] HITS file was successfully produced:
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas 904398015 Nov 26 20:14 shared/HITS.pool.root.1
[2025-11-26 20:15:34]  *** Contents of shared directory: ***
[2025-11-26 20:15:34] total 1295432
[2025-11-26 20:15:34] -rw-r--r-- 3 boincer umatlas 409656137 Nov 25 06:54 ATLAS.root_0
[2025-11-26 20:15:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 06:54 start_atlas.sh
[2025-11-26 20:15:34] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 06:54 input.tar.gz
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas 904398015 Nov 26 20:14 HITS.pool.root.1
[2025-11-26 20:15:34] -rw------- 1 boincer umatlas  11847680 Nov 26 20:15 result.tar.gz
20:15:36 (18921): run_atlas exited; CPU time 534679.765301
20:15:36 (18921): called boinc_finish(0)

</stderr_txt>
]]>

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