Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:17:24 (3775709): wrapper (7.7.26015): starting
08:17:24 (3775709): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 08:17:24] Arguments: --nthreads 9
[2025-11-25 08:17:24] Threads: 9
[2025-11-25 08:17:24] Checking for CVMFS
[2025-11-25 08:17:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:17:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:17:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:17:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:17:26] 2.13.3.0 17216 28523 473556 153284 3 279 26204978 32935937 73639 16776704 0 501598486 99.678 397794256 48516 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 08:17:26] CVMFS is ok
[2025-11-25 08:17:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:17:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:17:26] Further information can be found at the LHC@home message board.
[2025-11-25 08:17:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:17:26] Checking for apptainer binary...
[2025-11-25 08:17:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:17:26] Running /usr/bin/apptainer --version
[2025-11-25 08:17:26] apptainer version 1.4.4-1.el9
[2025-11-25 08:17:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:17:27] c7-9-14.aglt2.org
[2025-11-25 08:17:27] apptainer works
[2025-11-25 08:17:27] Set ATHENA_PROC_NUMBER=9
[2025-11-25 08:17:27] Set ATHENA_CORE_NUMBER=9
[2025-11-25 08:17:27] Starting ATLAS job with PandaID=6895375878
[2025-11-25 08:17:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:26:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:26:20] 2025-11-25 19:24:58,961 | INFO     | monitor loop #1382: job 0:6895375878 is in state 'finished'
[2025-11-25 14:26:20] 2025-11-25 19:24:58,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:26:20] 2025-11-25 19:25:00,611 | INFO     | PID=3787014 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 14:26:20] 2025-11-25 19:25:00,611 | INFO     | .. there are 106 such processes running
[2025-11-25 14:26:20] 2025-11-25 19:25:01,470 | INFO     | monitor loop #1383: job 0:6895375878 is in state 'finished'
[2025-11-25 14:26:20] 2025-11-25 19:25:01,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:26:20] 2025-11-25 19:25:01,619 | INFO     | time since job start (21986s) is within the limit (172800.0s)
[2025-11-25 14:26:20] 2025-11-25 19:25:03,643 | INFO     | time since job start (21988s) is within the limit (172800.0s)
[2025-11-25 14:26:20] 2025-11-25 19:25:03,976 | INFO     | monitor loop #1384: job 0:6895375878 is in state 'finished'
[2025-11-25 14:26:20] 2025-11-25 19:25:03,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:26:20] 2025-11-25 19:25:05,650 | INFO     | time since job start (21990s) is within the limit (172800.0s)
[2025-11-25 14:26:20] 2025-11-25 19:25:06,490 | INFO     | monitor loop #1385: job 0:6895375878 is in state 'finished'
[2025-11-25 14:26:20] 2025-11-25 19:25:06,490 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:26:20] 2025-11-25 19:25:07,657 | INFO     | time since job start (21992s) is within the limit (172800.0s)
[2025-11-25 14:26:20] 2025-11-25 19:25:08,994 | INFO     | monitor loop #1386: job 0:6895375878 is in state 'finished'
[2025-11-25 14:26:20] 2025-11-25 19:25:08,994 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:26:20] 2025-11-25 19:25:09,665 | INFO     | time since job start (21994s) is within the limit (172800.0s)
[2025-11-25 14:26:20] 2025-11-25 19:25:11,107 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 14:26:20] 2025-11-25 19:25:11,115 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.279484375001
[2025-11-25 14:26:20] 2025-11-25 19:25:11,194 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6895375878/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 14:26:20] 2025-11-25 19:25:11,194 | INFO     | extracted standard info from prmon json
[2025-11-25 14:26:20] 2025-11-25 19:25:11,194 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 14:26:20] 2025-11-25 19:25:11,194 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 14:26:20] 2025-11-25 19:25:11,202 | INFO     | fitting pss+swap vs Time
[2025-11-25 14:26:20] 2025-11-25 19:25:11,202 | INFO     | sum of square deviations: 14227881044.583858
[2025-11-25 14:26:20] 2025-11-25 19:25:11,204 | INFO     | sum of deviations: 112961864274.75134
[2025-11-25 14:26:20] 2025-11-25 19:25:11,204 | INFO     | mean x: 1764087723.310056
[2025-11-25 14:26:20] 2025-11-25 19:25:11,204 | INFO     | mean y: 2858644.9301675977
[2025-11-25 14:26:20] 2025-11-25 19:25:11,204 | INFO     | intersect: -14003066576.462072
[2025-11-25 14:26:20] 2025-11-25 19:25:11,204 | INFO     | chi2: 21.17235800735704
[2025-11-25 14:26:20] 2025-11-25 19:25:11,205 | INFO     | sum of square deviations: 13640244390.470243
[2025-11-25 14:26:20] 2025-11-25 19:25:11,210 | INFO     | sum of deviations: 236533254565.26935
[2025-11-25 14:26:20] 2025-11-25 19:25:11,210 | INFO     | mean x: 1764087570.835694
[2025-11-25 14:26:20] 2025-11-25 19:25:11,210 | INFO     | mean y: 2890731.6770538245
[2025-11-25 14:26:20] 2025-11-25 19:25:11,210 | INFO     | intersect: -30587864281.439083
[2025-11-25 14:26:20] 2025-11-25 19:25:11,211 | INFO     | chi2: 17.353712769834992
[2025-11-25 14:26:20] 2025-11-25 19:25:11,211 | INFO     | current chi2=17.353712769834992 (change=18.035994083394648 %)
[2025-11-25 14:26:20] 2025-11-25 19:25:11,211 | INFO     | right removable region: 352
[2025-11-25 14:26:20] 2025-11-25 19:25:11,211 | INFO     | sum of square deviations: 13639849110.470247
[2025-11-25 14:26:20] 2025-11-25 19:25:11,213 | INFO     | sum of deviations: -30737587436.878273
[2025-11-25 14:26:20] 2025-11-25 19:25:11,213 | INFO     | mean x: 1764087875.835694
[2025-11-25 14:26:20] 2025-11-25 19:25:11,213 | INFO     | mean y: 2895906.053824363
[2025-11-25 14:26:20] 2025-11-25 19:25:11,213 | INFO     | intersect: 3978292179.9182563
[2025-11-25 14:26:20] 2025-11-25 19:25:11,213 | INFO     | chi2: 16.81904920669304
[2025-11-25 14:26:20] 2025-11-25 19:25:11,213 | INFO     | current chi2=16.81904920669304 (change=20.56128466725953 %)
[2025-11-25 14:26:20] 2025-11-25 19:25:11,217 | INFO     | left removable region: 10
[2025-11-25 14:26:20] 2025-11-25 19:25:11,217 | INFO     | sum of square deviations: 12404120313.710522
[2025-11-25 14:26:20] 2025-11-25 19:25:11,219 | INFO     | sum of deviations: -4874035775.947319
[2025-11-25 14:26:20] 2025-11-25 19:25:11,219 | INFO     | mean x: 1764087845.3947368
[2025-11-25 14:26:20] 2025-11-25 19:25:11,219 | INFO     | mean y: 2972387.1403508773
[2025-11-25 14:26:20] 2025-11-25 19:25:11,219 | INFO     | intersect: 696147481.6179477
[2025-11-25 14:26:20] 2025-11-25 19:25:11,219 | INFO     | chi2: 8.554931798708525
[2025-11-25 14:26:20] 2025-11-25 19:25:11,219 | INFO     | current memory leak: -0.39 B/s (using 342 data points, chi2=8.55)
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | could have reported an average CPU frequency of 3799 MHz (15 samples)
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | ..............................
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | . Timing measurements:
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | . get job = 0 s
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | . initial setup = 7 s
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | . payload setup = 33 s
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | . stage-in = 0 s
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | . payload execution = 21859 s
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | . stage-out = 6 s
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | . log creation = 1 s
[2025-11-25 14:26:20] 2025-11-25 19:25:11,220 | INFO     | ..............................
[2025-11-25 14:26:20] 2025-11-25 19:25:11,340 | INFO     | 
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | job summary report
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | --------------------------------------------------
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | PanDA job id: 6895375878
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | task id: 47556137
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | errors: (none)
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | pilot state: finished 
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | transexitcode: 0
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | exeerrorcode: 0
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | exeerrordiag: 
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | exitcode: 0
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | exitmsg: OK
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | cpuconsumptiontime: 131913 s
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | nevents: 1000
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | neventsw: 0
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | pid: 3803514
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | pgrp: 3803514
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | corecount: 9
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | event service: False
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | sizes: {0: 2283487, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 29: 2284689, 34: 2284845, 21897: 2320111, 21904: 2329105, 21905: 2329161, 21937: 2329407}
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | --------------------------------------------------
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | 
[2025-11-25 14:26:20] 2025-11-25 19:25:11,341 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-25 14:26:20] 2025-11-25 19:25:11,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,515 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 14:26:20] 2025-11-25 19:25:11,516 | INFO     | job 6895375878 has completed (purged errors)
[2025-11-25 14:26:20] 2025-11-25 19:25:11,516 | INFO     | overall cleanup function is called
[2025-11-25 14:26:20] 2025-11-25 19:25:12,571 | INFO     | --- collectZombieJob: --- 10, [3803514]
[2025-11-25 14:26:20] 2025-11-25 19:25:12,572 | INFO     | zombie collector waiting for pid 3803514
[2025-11-25 14:26:20] 2025-11-25 19:25:12,572 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 14:26:20] 2025-11-25 19:25:12,572 | INFO     | collected zombie processes
[2025-11-25 14:26:20] 2025-11-25 19:25:12,572 | INFO     | will attempt to kill all subprocesses of pid=3803514
[2025-11-25 14:26:20] 2025-11-25 19:25:14,199 | INFO     | process IDs to be killed: [3803514] (in reverse order)
[2025-11-25 14:26:20] 2025-11-25 19:25:14,524 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 14:26:20] 2025-11-25 19:25:14,525 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 14:26:20] 2025-11-25 19:25:14,615 | INFO     | did not find any defunct processes belonging to 3803514
[2025-11-25 14:26:20] 2025-11-25 19:25:14,659 | INFO     | did not find any defunct processes belonging to 3803514
[2025-11-25 14:26:20] 2025-11-25 19:25:14,660 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 14:26:20] 2025-11-25 19:25:14,660 | INFO     | ready for new job
[2025-11-25 14:26:20] 2025-11-25 19:25:14,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 14:26:20] 2025-11-25 19:25:14,662 | INFO     | ***************************************
[2025-11-25 14:26:20] 2025-11-25 19:25:14,662 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 14:26:20] 2025-11-25 19:25:14,662 | INFO     | ***************************************
[2025-11-25 14:26:20] 2025-11-25 19:25:14,663 | INFO     | 
[2025-11-25 14:26:20] 2025-11-25 19:25:14,667 | INFO     | architecture information:
[2025-11-25 14:26:20] 2025-11-25 19:25:14,667 | INFO     | executing command: cat /etc/os-release
[2025-11-25 14:26:20] 2025-11-25 19:25:14,764 | INFO     | cat /etc/os-release:
[2025-11-25 14:26:20] NAME="CentOS Linux"
[2025-11-25 14:26:20] VERSION="7 (Core)"
[2025-11-25 14:26:20] ID="centos"
[2025-11-25 14:26:20] ID_LIKE="rhel fedora"
[2025-11-25 14:26:20] VERSION_ID="7"
[2025-11-25 14:26:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 14:26:20] ANSI_COLOR="0;31"
[2025-11-25 14:26:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 14:26:20] HOME_URL="https://www.centos.org/"
[2025-11-25 14:26:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 14:26:20] 
[2025-11-25 14:26:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 14:26:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 14:26:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 14:26:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 14:26:20] 
[2025-11-25 14:26:20] 2025-11-25 19:25:14,765 | INFO     | ***************************************
[2025-11-25 14:26:20] 2025-11-25 19:25:15,268 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-25 14:26:20] 2025-11-25 19:25:15,337 | INFO     | sufficient remaining disk space (60906536960 B)
[2025-11-25 14:26:20] 2025-11-25 19:25:15,337 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 14:26:20] 2025-11-25 19:25:15,337 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 14:26:20] 2025-11-25 19:25:15,337 | INFO     | update_server=False
[2025-11-25 14:26:20] 2025-11-25 19:25:15,337 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:26:20] 2025-11-25 19:25:15,337 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:26:20] 2025-11-25 19:25:15,337 | INFO     | aborting loop
[2025-11-25 14:26:20] 2025-11-25 19:25:15,459 | INFO     | all job control threads have been joined
[2025-11-25 14:26:20] 2025-11-25 19:25:15,727 | INFO     | all data control threads have been joined
[2025-11-25 14:26:20] 2025-11-25 19:25:15,781 | INFO     | all payload control threads have been joined
[2025-11-25 14:26:20] 2025-11-25 19:25:16,083 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:26:20] 2025-11-25 19:25:16,344 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:16,345 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:16,360 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:26:20] 2025-11-25 19:25:16,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:26:20] 2025-11-25 19:25:16,372 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:16,465 | INFO     | [job] control thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:16,629 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:16,736 | INFO     | [data] control thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:16,788 | INFO     | [payload] control thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:16,927 | INFO     | [job] validate thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:16,980 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:16,997 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:17,299 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:17,331 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:17,378 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:17,584 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:18,090 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:20,370 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:26:20] 2025-11-25 19:25:43,526 | INFO     | PID=3787014 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 14:26:20] 2025-11-25 19:25:43,526 | INFO     | .. there are 106 such processes running
[2025-11-25 14:26:20] 2025-11-25 19:25:43,526 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:26:20] 2025-11-25 19:25:43,526 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:26:20] 2025-11-25 19:25:43,526 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:26:20] 2025-11-25 19:26:12,750 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:26:20] 2025-11-25 19:26:14,111 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139897563563840)>', '<ExcThread(monitor, started 139896329066240)>']
[2025-11-25 14:26:20] 2025-11-25 19:26:14,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:26:20] 2025-11-25 19:26:14,747 | INFO     | [monitor] control thread has ended
[2025-11-25 14:26:20] 2025-11-25 19:26:19,137 | INFO     | all workflow threads have been joined
[2025-11-25 14:26:20] 2025-11-25 19:26:19,140 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:26:20] 2025-11-25 19:26:19,140 | INFO     | traces error code: 0
[2025-11-25 14:26:20] 2025-11-25 19:26:19,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:26:20] 2025-11-25 19:26:19,477 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:26:20] 2025-11-25 19:26:19,511 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:26:20] 2025-11-25 19:26:19,525 [wrapper] pilotpid: 3787014
[2025-11-25 14:26:20] 2025-11-25 19:26:19,544 [wrapper] Pilot exit status: 0
[2025-11-25 14:26:20] 2025-11-25 19:26:19,623 [wrapper] pandaids: 6895375878
[2025-11-25 14:26:20] 2025-11-25 19:26:19,844 [wrapper] cleanup supervisor_pilot 3381469 3787015
[2025-11-25 14:26:20] 2025-11-25 19:26:19,849 [wrapper] Test setup, not cleaning
[2025-11-25 14:26:20] 2025-11-25 19:26:19,865 [wrapper] apfmon messages muted
[2025-11-25 14:26:20] 2025-11-25 19:26:19,878 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:26:20] 2025-11-25 19:26:19,894 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:26:20]  *** Error codes and diagnostics ***
[2025-11-25 14:26:20]     "exeErrorCode": 0,
[2025-11-25 14:26:20]     "exeErrorDiag": "",
[2025-11-25 14:26:20]     "pilotErrorCode": 0,
[2025-11-25 14:26:20]     "pilotErrorDiag": "",
[2025-11-25 14:26:20]  *** Listing of results directory ***
[2025-11-25 14:26:20] total 1308832
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 19:08 pilot3.tar.gz
[2025-11-25 14:26:20] -rwx------. 1 boincer umatlas     36292 Nov 23 19:14 runpilot2-wrapper.sh
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 19:14 queuedata.json
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas       100 Nov 25 08:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:26:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 08:17 run_atlas
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas       105 Nov 25 08:17 job.xml
[2025-11-25 14:26:20] -rw-r--r--. 2 boincer umatlas 411691676 Nov 25 08:17 EVNT.47483658._000958.pool.root.1
[2025-11-25 14:26:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 08:17 start_atlas.sh
[2025-11-25 14:26:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 08:17 shared
[2025-11-25 14:26:20] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 08:17 input.tar.gz
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas         0 Nov 25 08:17 boinc_lockfile
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 08:17 pandaJob.out
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas        57 Nov 25 08:17 setup.sh.local
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas    991909 Nov 25 08:18 agis_schedconf.cvmfs.json
[2025-11-25 14:26:20] drwx------. 5 boincer umatlas      4096 Nov 25 08:18 pilot3
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas       533 Nov 25 14:04 boinc_task_state.xml
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas      7171 Nov 25 14:21 init_data.xml
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas 915348454 Nov 25 14:23 HITS.47556137._009449.pool.root.1
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas      1052 Nov 25 14:24 memory_monitor_summary.json
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas   1516240 Nov 25 14:24 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas   1762514 Nov 25 14:24 log.47556137._009449.job.log.tgz.1
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas        95 Nov 25 14:25 pilot_heartbeat.json
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas      8576 Nov 25 14:25 heartbeat.json
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 14:26 boinc_mmap_file
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas        29 Nov 25 14:26 wrapper_checkpoint.txt
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas      4825 Nov 25 14:26 pilotlog.txt
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas   2877294 Nov 25 14:26 log.47556137._009449.job.log.1
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas       353 Nov 25 14:26 output.list
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas       620 Nov 25 14:26 runtime_log
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas   4659200 Nov 25 14:26 result.tar.gz
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 14:26 runtime_log.err
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas       659 Nov 25 14:26 JRsKDm4OZh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzqIKDmitgxnn.diag
[2025-11-25 14:26:20] -rw-r--r--. 1 boincer umatlas     21896 Nov 25 14:26 stderr.txt
[2025-11-25 14:26:20] HITS file was successfully produced:
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas 915348454 Nov 25 14:23 shared/HITS.pool.root.1
[2025-11-25 14:26:20]  *** Contents of shared directory: ***
[2025-11-25 14:26:20] total 1301096
[2025-11-25 14:26:20] -rw-r--r--. 2 boincer umatlas 411691676 Nov 25 08:17 ATLAS.root_0
[2025-11-25 14:26:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 08:17 start_atlas.sh
[2025-11-25 14:26:20] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 08:17 input.tar.gz
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas 915348454 Nov 25 14:23 HITS.pool.root.1
[2025-11-25 14:26:20] -rw-------. 1 boincer umatlas   4659200 Nov 25 14:26 result.tar.gz
14:26:22 (3775709): run_atlas exited; CPU time 132252.285511
14:26:22 (3775709): called boinc_finish(0)

</stderr_txt>
]]>

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