Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:11:12 (3471786): wrapper (7.7.26015): starting
19:11:12 (3471786): wrapper: running run_atlas (--nthreads 2)
[2025-11-27 19:11:12] Arguments: --nthreads 2
[2025-11-27 19:11:12] Threads: 2
[2025-11-27 19:11:12] Checking for CVMFS
[2025-11-27 19:11:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 19:11:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 19:11:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 19:11:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 19:11:12] 2.9.2.0 1943952 13100 60236 153378 0 81 32649141 36864001 0 130560 0 4226462 99.933 644570 5386 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 19:11:12] CVMFS is ok
[2025-11-27 19:11:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 19:11:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 19:11:12] Further information can be found at the LHC@home message board.
[2025-11-27 19:11:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 19:11:12] Checking for apptainer binary...
[2025-11-27 19:11:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 19:11:12] Running /usr/bin/apptainer --version
[2025-11-27 19:11:12] apptainer version 1.4.1-1.1
[2025-11-27 19:11:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 19:11:12] madmaxA277a
[2025-11-27 19:11:12] apptainer works
[2025-11-27 19:11:12] Set ATHENA_PROC_NUMBER=2
[2025-11-27 19:11:12] Set ATHENA_CORE_NUMBER=2
[2025-11-27 19:11:12] Starting ATLAS job with PandaID=6895673636
[2025-11-27 19:11:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:19:38]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:19:38] 2025-11-28 06:19:07,061 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:19:38] 2025-11-28 06:19:07,061 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:19:38] 2025-11-28 06:19:07,061 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:19:38] 2025-11-28 06:19:07,061 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:19:38] 2025-11-28 06:19:07,061 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:19:38] 2025-11-28 06:19:07,061 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:19:38] 2025-11-28 06:19:07,061 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:19:38] 2025-11-28 06:19:07,061 | INFO     | job 6895673636 has completed (purged errors)
[2025-11-28 07:19:38] 2025-11-28 06:19:07,061 | INFO     | overall cleanup function is called
[2025-11-28 07:19:38] 2025-11-28 06:19:08,068 | INFO     | --- collectZombieJob: --- 10, [3481913]
[2025-11-28 07:19:38] 2025-11-28 06:19:08,069 | INFO     | zombie collector waiting for pid 3481913
[2025-11-28 07:19:38] 2025-11-28 06:19:08,069 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:19:38] 2025-11-28 06:19:08,069 | INFO     | collected zombie processes
[2025-11-28 07:19:38] 2025-11-28 06:19:08,070 | INFO     | will attempt to kill all subprocesses of pid=3481913
[2025-11-28 07:19:38] 2025-11-28 06:19:08,104 | INFO     | process IDs to be killed: [3481913] (in reverse order)
[2025-11-28 07:19:38] 2025-11-28 06:19:08,125 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:19:38] 2025-11-28 06:19:08,126 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:19:38] 2025-11-28 06:19:08,129 | INFO     | did not find any defunct processes belonging to 3481913
[2025-11-28 07:19:38] 2025-11-28 06:19:08,132 | INFO     | did not find any defunct processes belonging to 3481913
[2025-11-28 07:19:38] 2025-11-28 06:19:08,134 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:19:38] 2025-11-28 06:19:08,135 | INFO     | ready for new job
[2025-11-28 07:19:38] 2025-11-28 06:19:08,135 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:19:38] 2025-11-28 06:19:08,139 | INFO     | ***************************************
[2025-11-28 07:19:38] 2025-11-28 06:19:08,139 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:19:38] 2025-11-28 06:19:08,139 | INFO     | ***************************************
[2025-11-28 07:19:38] 2025-11-28 06:19:08,139 | INFO     | 
[2025-11-28 07:19:38] 2025-11-28 06:19:08,140 | INFO     | architecture information:
[2025-11-28 07:19:38] 2025-11-28 06:19:08,141 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:19:38] 2025-11-28 06:19:08,161 | INFO     | cat /etc/os-release:
[2025-11-28 07:19:38] NAME="CentOS Linux"
[2025-11-28 07:19:38] VERSION="7 (Core)"
[2025-11-28 07:19:38] ID="centos"
[2025-11-28 07:19:38] ID_LIKE="rhel fedora"
[2025-11-28 07:19:38] VERSION_ID="7"
[2025-11-28 07:19:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:19:38] ANSI_COLOR="0;31"
[2025-11-28 07:19:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:19:38] HOME_URL="https://www.centos.org/"
[2025-11-28 07:19:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:19:38] 
[2025-11-28 07:19:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:19:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:19:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:19:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:19:38] 
[2025-11-28 07:19:38] 2025-11-28 06:19:08,161 | INFO     | ***************************************
[2025-11-28 07:19:38] 2025-11-28 06:19:08,665 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 07:19:38] 2025-11-28 06:19:08,677 | INFO     | sufficient remaining disk space (483155509248 B)
[2025-11-28 07:19:38] 2025-11-28 06:19:08,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:19:38] 2025-11-28 06:19:08,677 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:19:38] 2025-11-28 06:19:08,677 | INFO     | update_server=False
[2025-11-28 07:19:38] 2025-11-28 06:19:08,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:19:38] 2025-11-28 06:19:08,677 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:19:38] 2025-11-28 06:19:08,677 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:19:38] 2025-11-28 06:19:08,677 | INFO     | aborting loop
[2025-11-28 07:19:38] 2025-11-28 06:19:09,190 | INFO     | all payload control threads have been joined
[2025-11-28 07:19:38] 2025-11-28 06:19:09,281 | INFO     | all data control threads have been joined
[2025-11-28 07:19:38] 2025-11-28 06:19:09,502 | INFO     | all job control threads have been joined
[2025-11-28 07:19:38] 2025-11-28 06:19:09,683 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:09,683 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:09,936 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:19:38] 2025-11-28 06:19:09,953 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:10,139 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:10,196 | INFO     | [payload] control thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:10,287 | INFO     | [data] control thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:10,409 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:10,508 | INFO     | [job] control thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:10,676 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:10,830 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:11,014 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:11,184 | INFO     | [job] validate thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:11,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:19:38] 2025-11-28 06:19:11,943 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:12,633 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:12,684 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:19,559 | INFO     | job.realtimelogging is not enabled
[2025-11-28 07:19:38] 2025-11-28 06:19:20,565 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:19:38] 2025-11-28 06:19:25,762 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:19:38] 2025-11-28 06:19:25,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140359155238720)>', '<ExcThread(monitor, started 140358356809472)>']
[2025-11-28 07:19:38] 2025-11-28 06:19:30,888 | INFO     | all workflow threads have been joined
[2025-11-28 07:19:38] 2025-11-28 06:19:30,889 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:19:38] 2025-11-28 06:19:30,889 | INFO     | traces error code: 0
[2025-11-28 07:19:38] 2025-11-28 06:19:30,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:19:38] 2025-11-28 06:19:38,746 | INFO     | PID=3475495 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:19:38] 2025-11-28 06:19:38,746 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:19:38] 2025-11-28 06:19:38,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:19:38] 2025-11-28 06:19:38,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:19:38] 2025-11-28 06:19:38,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:19:38] 2025-11-28 06:19:38,746 | INFO     | [monitor] control thread has ended
[2025-11-28 07:19:38] 2025-11-28 06:19:38,786 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:19:38] 2025-11-28 06:19:38,788 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:19:38] 2025-11-28 06:19:38,790 [wrapper] pilotpid: 3475495
[2025-11-28 07:19:38] 2025-11-28 06:19:38,792 [wrapper] Pilot exit status: 0
[2025-11-28 07:19:38] 2025-11-28 06:19:38,798 [wrapper] pandaids: 6895673636
[2025-11-28 07:19:38] 2025-11-28 06:19:38,810 [wrapper] cleanup supervisor_pilot 3552260 3475496
[2025-11-28 07:19:38] 2025-11-28 06:19:38,812 [wrapper] Test setup, not cleaning
[2025-11-28 07:19:38] 2025-11-28 06:19:38,814 [wrapper] apfmon messages muted
[2025-11-28 07:19:38] 2025-11-28 06:19:38,816 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:19:38] 2025-11-28 06:19:38,818 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:19:38]  *** Error codes and diagnostics ***
[2025-11-28 07:19:38]     "exeErrorCode": 0,
[2025-11-28 07:19:38]     "exeErrorDiag": "",
[2025-11-28 07:19:38]     "pilotErrorCode": 0,
[2025-11-28 07:19:38]     "pilotErrorDiag": "",
[2025-11-28 07:19:38]  *** Listing of results directory ***
[2025-11-28 07:19:38] total 1308128
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc    576529 Nov 24 13:18 pilot3.tar.gz
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc      5112 Nov 24 13:56 queuedata.json
[2025-11-28 07:19:38] -rwx------ 1 boinc boinc     36292 Nov 24 13:59 runpilot2-wrapper.sh
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc       100 Nov 27 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:19:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 19:11 run_atlas
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc       105 Nov 27 19:11 job.xml
[2025-11-28 07:19:38] -rw-r--r-- 2 boinc boinc 410551380 Nov 27 19:11 EVNT.47483658._001345.pool.root.1
[2025-11-28 07:19:38] -rw-r--r-- 2 boinc boinc    590108 Nov 27 19:11 input.tar.gz
[2025-11-28 07:19:38] -rw-r--r-- 2 boinc boinc     15847 Nov 27 19:11 start_atlas.sh
[2025-11-28 07:19:38] drwxrwx--x 2 boinc boinc      4096 Nov 27 19:11 shared
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc         0 Nov 27 19:11 boinc_setup_complete
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc      6211 Nov 27 19:11 init_data.xml
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc         0 Nov 27 19:11 boinc_lockfile
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc      2782 Nov 27 19:11 pandaJob.out
[2025-11-28 07:19:38] -rw------- 1 boinc boinc    991231 Nov 27 19:11 agis_schedconf.cvmfs.json
[2025-11-28 07:19:38] drwx------ 5 boinc boinc      4096 Nov 27 19:11 pilot3
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc       531 Nov 28 07:15 boinc_task_state.xml
[2025-11-28 07:19:38] -rw------- 1 boinc boinc 910409183 Nov 28 07:18 HITS.47556149._003311.pool.root.1
[2025-11-28 07:19:38] -rw------- 1 boinc boinc        95 Nov 28 07:18 pilot_heartbeat.json
[2025-11-28 07:19:38] -rw------- 1 boinc boinc      1027 Nov 28 07:18 memory_monitor_summary.json
[2025-11-28 07:19:38] -rw------- 1 boinc boinc   1516240 Nov 28 07:18 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:19:38] -rw------- 1 boinc boinc   1209195 Nov 28 07:18 log.47556149._003311.job.log.tgz.1
[2025-11-28 07:19:38] -rw------- 1 boinc boinc      8565 Nov 28 07:19 heartbeat.json
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc        28 Nov 28 07:19 wrapper_checkpoint.txt
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc      8192 Nov 28 07:19 boinc_mmap_file
[2025-11-28 07:19:38] -rw------- 1 boinc boinc       747 Nov 28 07:19 pilotlog.txt
[2025-11-28 07:19:38] -rw------- 1 boinc boinc   6127093 Nov 28 07:19 log.47556149._003311.job.log.1
[2025-11-28 07:19:38] -rw------- 1 boinc boinc       353 Nov 28 07:19 output.list
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc       620 Nov 28 07:19 runtime_log
[2025-11-28 07:19:38] -rw------- 1 boinc boinc   7352320 Nov 28 07:19 result.tar.gz
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc      8923 Nov 28 07:19 runtime_log.err
[2025-11-28 07:19:38] -rw------- 1 boinc boinc       670 Nov 28 07:19 hsbLDmpLlh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBhLKDmERkX2n.diag
[2025-11-28 07:19:38] -rw-r--r-- 1 boinc boinc     11844 Nov 28 07:19 stderr.txt
[2025-11-28 07:19:38] HITS file was successfully produced:
[2025-11-28 07:19:38] -rw------- 1 boinc boinc 910409183 Nov 28 07:18 shared/HITS.pool.root.1
[2025-11-28 07:19:38]  *** Contents of shared directory: ***
[2025-11-28 07:19:38] total 1297784
[2025-11-28 07:19:38] -rw-r--r-- 2 boinc boinc 410551380 Nov 27 19:11 ATLAS.root_0
[2025-11-28 07:19:38] -rw-r--r-- 2 boinc boinc    590108 Nov 27 19:11 input.tar.gz
[2025-11-28 07:19:38] -rw-r--r-- 2 boinc boinc     15847 Nov 27 19:11 start_atlas.sh
[2025-11-28 07:19:38] -rw------- 1 boinc boinc 910409183 Nov 28 07:18 HITS.pool.root.1
[2025-11-28 07:19:38] -rw------- 1 boinc boinc   7352320 Nov 28 07:19 result.tar.gz
07:19:40 (3471786): run_atlas exited; CPU time 86524.004201
07:19:40 (3471786): called boinc_finish(0)

</stderr_txt>
]]>

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