Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 06:56:58 (11136): vboxwrapper version 26210
2025-11-25 06:56:58 (11136): BOINC client version: 8.2.7
2025-11-25 06:56:59 (11136): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-11-25 06:56:59 (11136): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 06:56:59 (11136): Create VM. (boinc_a086dd202818a285, slot#5)
2025-11-25 06:57:00 (11136): Setting Memory Size for VM. (4400MB)
2025-11-25 06:57:00 (11136): Setting CPU Count for VM. (4)
2025-11-25 06:57:01 (11136): Setting Chipset Options for VM.
2025-11-25 06:57:01 (11136): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 06:57:02 (11136): Setting Boot Options for VM.
2025-11-25 06:57:03 (11136): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 06:57:04 (11136): Enabling VM Network Access.
2025-11-25 06:57:04 (11136): Disabling USB Support for VM.
2025-11-25 06:57:05 (11136): Disabling COM Port Support for VM.
2025-11-25 06:57:06 (11136): Disabling LPT Port Support for VM.
2025-11-25 06:57:06 (11136): Disabling Audio Support for VM.
2025-11-25 06:57:07 (11136): Disabling Clipboard Support for VM.
2025-11-25 06:57:08 (11136): Disabling Drag and Drop Support for VM.
2025-11-25 06:57:08 (11136): Adding storage controller(s) to VM.
2025-11-25 06:57:09 (11136): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 06:57:09 (11136): Adding VirtualBox Guest Additions to VM.
2025-11-25 06:57:09 (11136): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 06:57:10 (11136): forwarding host port 51403 to guest port 80
2025-11-25 06:57:10 (11136): Enabling remote desktop for VM.
2025-11-25 06:57:10 (11136): Enabling shared directory for VM.
2025-11-25 06:57:11 (11136): Starting VM using VBoxManage interface. (boinc_a086dd202818a285, slot#5)
2025-11-25 06:57:16 (11136): Successfully started VM. (PID = '8916')
2025-11-25 06:57:16 (11136): Reporting VM Process ID to BOINC.
2025-11-25 06:57:16 (11136): Guest Log: BIOS: VirtualBox 7.2.0
2025-11-25 06:57:16 (11136): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 06:57:16 (11136): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 06:57:16 (11136): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 06:57:16 (11136): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 06:57:16 (11136): Detected: Web Application Enabled (http://localhost:51403)
2025-11-25 06:57:16 (11136): Detected: Remote Desktop Enabled (localhost:51418)
2025-11-25 06:57:16 (11136): Preference change detected
2025-11-25 06:57:16 (11136): Setting CPU throttle for VM. (100%)
2025-11-25 06:57:16 (11136): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 06:57:18 (11136): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 06:57:18 (11136): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 06:57:21 (11136): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 06:57:21 (11136): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 06:57:21 (11136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 06:57:29 (11136): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 06:57:29 (11136): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 06:57:44 (11136): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 06:57:44 (11136): Guest Log: 00:00:00.000097 main     Log opened 2025-11-25T06:57:42.360272000Z
2025-11-25 06:57:44 (11136): Guest Log: 00:00:00.000196 main     OS Product: Linux
2025-11-25 06:57:44 (11136): Guest Log: 00:00:00.000217 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 06:57:44 (11136): Guest Log: 00:00:00.000233 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 06:57:44 (11136): Guest Log: 00:00:00.000247 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 06:57:44 (11136): Guest Log: 00:00:00.000248 main     Process ID: 1308
2025-11-25 06:57:44 (11136): Guest Log: 00:00:00.000248 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 06:57:44 (11136): Guest Log: 00:00:00.000738 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 06:57:44 (11136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 06:57:44 (11136): Guest Log: [INFO] Mounting shared directory
2025-11-25 06:57:44 (11136): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 06:57:50 (11136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 06:57:50 (11136): Guest Log: [INFO] Detected branch: prod
2025-11-25 06:57:50 (11136): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 06:57:50 (11136): Guest Log: Copying input files
2025-11-25 06:57:54 (11136): Guest Log: 00:00:10.016246 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 265 831 000ns (GuestNow=1 764 071 873 628 105 000 ns GuestLast=1 764 053 862 362 274 000 ns fSetTimeLastLoop=true )
2025-11-25 06:57:56 (11136): Guest Log: Copied input files into RunAtlas.
2025-11-25 06:57:56 (11136): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 06:57:56 (11136): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 06:57:56 (11136): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 06:57:56 (11136): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 06:58:14 (11136): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 06:58:14 (11136): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 06:58:14 (11136): Guest Log: 2.6.3.0 1588 0 32176 153281 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 06:58:17 (11136): Guest Log: copied the webapp to /var/www
2025-11-25 06:58:17 (11136): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-25 06:58:17 (11136): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-25 06:58:18 (11136): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 06:58:18 (11136): Guest Log:  *** Starting ATLAS job. (PandaID=6895651759 taskID=47556161) ***
2025-11-25 08:37:18 (11136): Status Report: Elapsed Time: '6000.000000'
2025-11-25 08:37:18 (11136): Status Report: CPU Time: '10012.625000'
2025-11-25 10:17:21 (11136): Status Report: Elapsed Time: '12000.000000'
2025-11-25 10:17:21 (11136): Status Report: CPU Time: '33756.125000'
2025-11-25 11:57:24 (11136): Status Report: Elapsed Time: '18000.000000'
2025-11-25 11:57:24 (11136): Status Report: CPU Time: '57458.859375'
2025-11-25 13:37:26 (11136): Status Report: Elapsed Time: '24000.000000'
2025-11-25 13:37:26 (11136): Status Report: CPU Time: '81287.593750'
2025-11-25 15:17:29 (11136): Status Report: Elapsed Time: '30000.000000'
2025-11-25 15:17:29 (11136): Status Report: CPU Time: '105109.359375'
2025-11-25 16:57:32 (11136): Status Report: Elapsed Time: '36000.000000'
2025-11-25 16:57:32 (11136): Status Report: CPU Time: '128888.421875'
2025-11-25 17:27:05 (11136): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 17:55:44 (11136): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 19:06:14 (11136): Status Report: Elapsed Time: '42000.000000'
2025-11-25 19:06:14 (11136): Status Report: CPU Time: '152662.953125'
2025-11-25 20:46:17 (11136): Status Report: Elapsed Time: '48000.000000'
2025-11-25 20:46:17 (11136): Status Report: CPU Time: '176385.046875'
2025-11-25 22:26:20 (11136): Status Report: Elapsed Time: '54000.000000'
2025-11-25 22:26:20 (11136): Status Report: CPU Time: '200107.078125'
2025-11-26 00:06:23 (11136): Status Report: Elapsed Time: '60000.000000'
2025-11-26 00:06:23 (11136): Status Report: CPU Time: '223823.890625'
2025-11-26 00:18:02 (11136): Guest Log:  *** Job finished ***
2025-11-26 00:18:02 (11136): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:29,856 | INFO     | all workflow threads have been joined
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:29,857 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:29,857 | INFO     | traces error code: 0
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:29,857 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,580 | INFO     | PID=6214 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,581 | INFO     | found 0 job(s) in 20 queues
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,581 | INFO     | [monitor] control thread has ended
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,859 [wrapper] ==== pilot stdout END ====
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,864 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,868 [wrapper] pilotpid: 6214
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,872 [wrapper] Pilot exit status: 0
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,911 [wrapper] pandaids: 6895651759
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,940 [wrapper] cleanup supervisor_pilot 25670 6215
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,946 [wrapper] Test setup, not cleaning
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,952 [wrapper] apfmon messages muted
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,957 [wrapper] ==== wrapper stdout END ====
2025-11-26 00:18:02 (11136): Guest Log: 2025-11-26 05:17:46,963 [wrapper] ==== wrapper stderr END ====
2025-11-26 00:18:02 (11136): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 00:18:02 (11136): Guest Log:     "exeErrorCode": 0,
2025-11-26 00:18:02 (11136): Guest Log:     "exeErrorDiag": "",
2025-11-26 00:18:02 (11136): Guest Log:     "pilotErrorCode": 0,
2025-11-26 00:18:02 (11136): Guest Log:     "pilotErrorDiag": "",
2025-11-26 00:18:02 (11136): Guest Log:  *** Listing of results directory ***
2025-11-26 00:18:02 (11136): Guest Log: total 917120
2025-11-26 00:18:02 (11136): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 24 12:18 pilot3.tar.gz
2025-11-26 00:18:02 (11136): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 24 12:36 queuedata.json
2025-11-26 00:18:02 (11136): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 24 12:39 runpilot2-wrapper.sh
2025-11-26 00:18:02 (11136): Guest Log: -rwxr-xr-x. 1 atlas atlas      8486 Nov 25 11:57 init_data.xml
2025-11-26 00:18:02 (11136): Guest Log: -rwxr-xr-x. 1 atlas atlas    590105 Nov 25 11:57 input.tar.gz
2025-11-26 00:18:02 (11136): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 25 11:57 start_atlas.sh
2025-11-26 00:18:02 (11136): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 11:57 EVNT.47483658._002044.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 00:18:02 (11136): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 25 11:58 pandaJob.out
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas    991894 Nov 25 12:13 agis_schedconf.cvmfs.json
2025-11-26 00:18:02 (11136): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 12:14 pilot3
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas 916191634 Nov 26 05:16 HITS.47556161._000274.pool.root.1
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas      1035 Nov 26 05:16 memory_monitor_summary.json
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 05:16 agis_ddmendpoints.agis.ALL.json
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas   1682400 Nov 26 05:16 log.47556161._000274.job.log.tgz.1
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas      8635 Nov 26 05:17 heartbeat.json
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas        97 Nov 26 05:17 pilot_heartbeat.json
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas       744 Nov 26 05:17 pilotlog.txt
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas   7866590 Nov 26 05:17 log.47556161._000274.job.log.1
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 05:17 output.list
2025-11-26 00:18:02 (11136): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 05:17 runtime_log
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas   9564160 Nov 26 05:17 result.tar.gz
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas       660 Nov 26 05:17 YU3KDmH2kh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8fLKDmnuBMNo.diag
2025-11-26 00:18:02 (11136): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 26 05:17 runtime_log.err
2025-11-26 00:18:02 (11136): Guest Log: Looking for outputfile HITS.47556161._000274.pool.root.1
2025-11-26 00:18:02 (11136): Guest Log: HITS file was successfully produced
2025-11-26 00:18:02 (11136): Guest Log: -rw-------. 1 atlas atlas 916191634 Nov 26 05:16 /home/atlas/RunAtlas/HITS.47556161._000274.pool.root.1
2025-11-26 00:18:09 (11136): Guest Log: Successfully finished the ATLAS job!
2025-11-26 00:18:09 (11136): Guest Log: Copying the results back to the shared directory!
2025-11-26 00:18:09 (11136): Guest Log:  *** Contents of shared directory: ***
2025-11-26 00:18:09 (11136): Guest Log: total 1303396
2025-11-26 00:18:09 (11136): Guest Log: -rwxrwxrwx. 1 root root 408295877 Nov 25 11:56 ATLAS.root_0
2025-11-26 00:18:09 (11136): Guest Log: -rwxrwxrwx. 1 root root 916191634 Nov 26  2025 HITS.pool.root.1
2025-11-26 00:18:09 (11136): Guest Log: -rwxrwxrwx. 1 root root      8486 Nov 25 11:56 init_data.xml
2025-11-26 00:18:09 (11136): Guest Log: -rwxrwxrwx. 1 root root    590105 Nov 25 11:47 input.tar.gz
2025-11-26 00:18:09 (11136): Guest Log: -rwxrwxrwx. 1 root root   9564160 Nov 26  2025 result.tar.gz
2025-11-26 00:18:09 (11136): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 25 11:47 start_atlas.sh
2025-11-26 00:18:09 (11136): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 00:18:09 (11136): VM Completion File Detected.
2025-11-26 00:18:09 (11136): Powering off VM.
2025-11-26 00:18:12 (11136): Successfully stopped VM.
2025-11-26 00:18:12 (11136): Deregistering VM. (boinc_a086dd202818a285, slot#5)
2025-11-26 00:18:12 (11136): Removing network bandwidth throttle group from VM.
2025-11-26 00:18:13 (11136): Removing VM from VirtualBox.
2025-11-26 00:18:26 (11136): called boinc_finish(0)

</stderr_txt>
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