Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:42:21 (1160141): wrapper (7.7.26015): starting
12:42:21 (1160141): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:42:21] Arguments: --nthreads 8
[2025-11-25 12:42:21] Threads: 8
[2025-11-25 12:42:21] Checking for CVMFS
[2025-11-25 12:42:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:42:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:42:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:42:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:42:22] 2.13.3.0 9158 28879 301292 153291 1 137 18413133 32935936 26999 16776704 0 167035200 99.788 93651861 33886 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 12:42:22] CVMFS is ok
[2025-11-25 12:42:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:42:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:42:22] Further information can be found at the LHC@home message board.
[2025-11-25 12:42:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:42:22] Checking for apptainer binary...
[2025-11-25 12:42:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:42:22] Running /usr/bin/apptainer --version
[2025-11-25 12:42:23] apptainer version 1.4.4-1.el9
[2025-11-25 12:42:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:42:24] c-8-16.aglt2.org
[2025-11-25 12:42:24] apptainer works
[2025-11-25 12:42:24] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:42:24] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:42:24] Starting ATLAS job with PandaID=6895651663
[2025-11-25 12:42:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:35:24]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:35:24] 2025-11-26 23:34:43,091 | INFO     | time since job start (107508s) is within the limit (172800.0s)
[2025-11-26 18:35:24] 2025-11-26 23:34:44,680 | INFO     | monitor loop #6116: job 0:6895651663 is in state 'finished'
[2025-11-26 18:35:24] 2025-11-26 23:34:44,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:35:24] 2025-11-26 23:34:45,098 | INFO     | time since job start (107510s) is within the limit (172800.0s)
[2025-11-26 18:35:24] 2025-11-26 23:34:47,106 | INFO     | time since job start (107512s) is within the limit (172800.0s)
[2025-11-26 18:35:24] 2025-11-26 23:34:47,185 | INFO     | monitor loop #6117: job 0:6895651663 is in state 'finished'
[2025-11-26 18:35:24] 2025-11-26 23:34:47,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:35:24] 2025-11-26 23:34:48,933 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 18:35:24] 2025-11-26 23:34:48,951 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.14185
[2025-11-26 18:35:24] 2025-11-26 23:34:48,987 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895651663/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:35:24] 2025-11-26 23:34:48,997 | INFO     | extracted standard info from prmon json
[2025-11-26 18:35:24] 2025-11-26 23:34:48,997 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:35:24] 2025-11-26 23:34:48,997 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:35:24] 2025-11-26 23:34:49,031 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:35:24] 2025-11-26 23:34:49,033 | INFO     | sum of square deviations: 1693422276571.1567
[2025-11-26 18:35:24] 2025-11-26 23:34:49,138 | INFO     | time since job start (107514s) is within the limit (172800.0s)
[2025-11-26 18:35:24] 2025-11-26 23:34:49,140 | INFO     | sum of deviations: 6310452392271.215
[2025-11-26 18:35:24] 2025-11-26 23:34:49,140 | INFO     | mean x: 1764146327.4014764
[2025-11-26 18:35:24] 2025-11-26 23:34:49,140 | INFO     | mean y: 2983435.375922771
[2025-11-26 18:35:24] 2025-11-26 23:34:49,140 | INFO     | intersect: -6571018552.249011
[2025-11-26 18:35:24] 2025-11-26 23:34:49,147 | INFO     | chi2: 13.447530290267473
[2025-11-26 18:35:24] 2025-11-26 23:34:49,149 | INFO     | sum of square deviations: 1679039857296.3086
[2025-11-26 18:35:24] 2025-11-26 23:34:49,310 | INFO     | sum of deviations: 6905252459277.778
[2025-11-26 18:35:24] 2025-11-26 23:34:49,310 | INFO     | mean x: 1764146174.905467
[2025-11-26 18:35:24] 2025-11-26 23:34:49,310 | INFO     | mean y: 2989741.1372437356
[2025-11-26 18:35:24] 2025-11-26 23:34:49,310 | INFO     | intersect: -7252272639.832946
[2025-11-26 18:35:24] 2025-11-26 23:34:49,312 | INFO     | chi2: 10.42487626337031
[2025-11-26 18:35:24] 2025-11-26 23:34:49,313 | INFO     | current chi2=10.42487626337031 (change=22.477391473769583 %)
[2025-11-26 18:35:24] 2025-11-26 23:34:49,313 | INFO     | right removable region: 1755
[2025-11-26 18:35:24] 2025-11-26 23:34:49,319 | INFO     | sum of square deviations: 1679038351816.309
[2025-11-26 18:35:24] 2025-11-26 23:34:49,540 | INFO     | sum of deviations: 5639896569043.134
[2025-11-26 18:35:24] 2025-11-26 23:34:49,541 | INFO     | mean x: 1764146479.905467
[2025-11-26 18:35:24] 2025-11-26 23:34:49,541 | INFO     | mean y: 2990543.422551253
[2025-11-26 18:35:24] 2025-11-26 23:34:49,541 | INFO     | intersect: -5922784569.781579
[2025-11-26 18:35:24] 2025-11-26 23:34:49,551 | INFO     | chi2: 9.999783067009604
[2025-11-26 18:35:24] 2025-11-26 23:34:49,552 | INFO     | current chi2=9.999783067009604 (change=25.638516135212903 %)
[2025-11-26 18:35:24] 2025-11-26 23:34:49,559 | INFO     | sum of square deviations: 1664736210007.2212
[2025-11-26 18:35:24] 2025-11-26 23:34:49,743 | INFO     | monitor loop #6118: job 0:6895651663 is in state 'finished'
[2025-11-26 18:35:24] 2025-11-26 23:34:49,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:35:24] 2025-11-26 23:34:50,024 | INFO     | sum of deviations: 5292595795283.818
[2025-11-26 18:35:24] 2025-11-26 23:34:50,025 | INFO     | mean x: 1764146632.408909
[2025-11-26 18:35:24] 2025-11-26 23:34:50,025 | INFO     | mean y: 2994244.588235294
[2025-11-26 18:35:24] 2025-11-26 23:34:50,025 | INFO     | intersect: -5605651132.874299
[2025-11-26 18:35:24] 2025-11-26 23:34:50,027 | INFO     | chi2: 9.083459287980244
[2025-11-26 18:35:24] 2025-11-26 23:34:50,045 | INFO     | current chi2=9.083459287980244 (change=9.163436575463466 %)
[2025-11-26 18:35:24] 2025-11-26 23:34:50,045 | INFO     | left removable region: 20
[2025-11-26 18:35:24] 2025-11-26 23:34:50,047 | INFO     | sum of square deviations: 1619517719092.0466
[2025-11-26 18:35:24] 2025-11-26 23:34:50,614 | INFO     | sum of deviations: 5692953847456.54
[2025-11-26 18:35:24] 2025-11-26 23:34:50,660 | INFO     | mean x: 1764146754.4178674
[2025-11-26 18:35:24] 2025-11-26 23:34:50,661 | INFO     | mean y: 3005140.5054755043
[2025-11-26 18:35:24] 2025-11-26 23:34:50,661 | INFO     | intersect: -6198350938.927671
[2025-11-26 18:35:24] 2025-11-26 23:34:50,663 | INFO     | chi2: 5.328055174985032
[2025-11-26 18:35:24] 2025-11-26 23:34:50,664 | INFO     | current memory leak: 3.52 B/s (using 1735 data points, chi2=5.33)
[2025-11-26 18:35:24] 2025-11-26 23:34:50,712 | INFO     | could have reported an average CPU frequency of 2600 MHz (62 samples)
[2025-11-26 18:35:24] 2025-11-26 23:34:50,713 | INFO     | ..............................
[2025-11-26 18:35:24] 2025-11-26 23:34:50,713 | INFO     | . Timing measurements:
[2025-11-26 18:35:24] 2025-11-26 23:34:50,713 | INFO     | . get job = 0 s
[2025-11-26 18:35:24] 2025-11-26 23:34:50,713 | INFO     | . initial setup = 4 s
[2025-11-26 18:35:24] 2025-11-26 23:34:50,713 | INFO     | . payload setup = 20 s
[2025-11-26 18:35:24] 2025-11-26 23:34:50,713 | INFO     | . stage-in = 0 s
[2025-11-26 18:35:24] 2025-11-26 23:34:50,713 | INFO     | . payload execution = 107413 s
[2025-11-26 18:35:24] 2025-11-26 23:34:50,713 | INFO     | . stage-out = 7 s
[2025-11-26 18:35:24] 2025-11-26 23:34:50,714 | INFO     | . log creation = 1 s
[2025-11-26 18:35:24] 2025-11-26 23:34:50,714 | INFO     | ..............................
[2025-11-26 18:35:24] 2025-11-26 23:34:51,077 | INFO     | 
[2025-11-26 18:35:24] 2025-11-26 23:34:51,077 | INFO     | job summary report
[2025-11-26 18:35:24] 2025-11-26 23:34:51,078 | INFO     | --------------------------------------------------
[2025-11-26 18:35:24] 2025-11-26 23:34:51,078 | INFO     | PanDA job id: 6895651663
[2025-11-26 18:35:24] 2025-11-26 23:34:51,078 | INFO     | task id: 47556149
[2025-11-26 18:35:24] 2025-11-26 23:34:51,078 | INFO     | errors: (none)
[2025-11-26 18:35:24] 2025-11-26 23:34:51,078 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:35:24] 2025-11-26 23:34:51,078 | INFO     | pilot state: finished 
[2025-11-26 18:35:24] 2025-11-26 23:34:51,078 | INFO     | transexitcode: 0
[2025-11-26 18:35:24] 2025-11-26 23:34:51,078 | INFO     | exeerrorcode: 0
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | exeerrordiag: 
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | exitcode: 0
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | exitmsg: OK
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | cpuconsumptiontime: 311096 s
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | nevents: 1000
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | neventsw: 0
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | pid: 1182826
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | pgrp: 1182826
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | corecount: 8
[2025-11-26 18:35:24] 2025-11-26 23:34:51,079 | INFO     | event service: False
[2025-11-26 18:35:24] 2025-11-26 23:34:51,080 | INFO     | sizes: {0: 2283486, 1: 2284171, 2: 2284370, 13: 2284370, 18: 2284688, 24: 2284716, 107438: 2359440, 107446: 2368434, 107449: 2368490, 107479: 2368736}
[2025-11-26 18:35:24] 2025-11-26 23:34:51,080 | INFO     | --------------------------------------------------
[2025-11-26 18:35:24] 2025-11-26 23:34:51,080 | INFO     | 
[2025-11-26 18:35:24] 2025-11-26 23:34:51,080 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 18:35:24] 2025-11-26 23:34:51,125 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,125 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,125 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,126 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,126 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,126 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,126 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,127 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,127 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,127 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,127 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,127 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,127 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,127 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:35:24] 2025-11-26 23:34:51,127 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,127 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:35:24] 2025-11-26 23:34:51,128 | INFO     | job 6895651663 has completed (purged errors)
[2025-11-26 18:35:24] 2025-11-26 23:34:51,128 | INFO     | overall cleanup function is called
[2025-11-26 18:35:24] 2025-11-26 23:34:52,157 | INFO     | --- collectZombieJob: --- 10, [1182826]
[2025-11-26 18:35:24] 2025-11-26 23:34:52,158 | INFO     | zombie collector waiting for pid 1182826
[2025-11-26 18:35:24] 2025-11-26 23:34:52,158 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:35:24] 2025-11-26 23:34:52,158 | INFO     | collected zombie processes
[2025-11-26 18:35:24] 2025-11-26 23:34:52,158 | INFO     | will attempt to kill all subprocesses of pid=1182826
[2025-11-26 18:35:24] 2025-11-26 23:34:53,172 | INFO     | process IDs to be killed: [1182826] (in reverse order)
[2025-11-26 18:35:24] 2025-11-26 23:34:53,327 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:35:24] 2025-11-26 23:34:53,328 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:35:24] 2025-11-26 23:34:53,364 | INFO     | did not find any defunct processes belonging to 1182826
[2025-11-26 18:35:24] 2025-11-26 23:34:53,397 | INFO     | did not find any defunct processes belonging to 1182826
[2025-11-26 18:35:24] 2025-11-26 23:34:53,402 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:35:24] 2025-11-26 23:34:53,403 | INFO     | ready for new job
[2025-11-26 18:35:24] 2025-11-26 23:34:53,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:35:24] 2025-11-26 23:34:53,416 | INFO     | ***************************************
[2025-11-26 18:35:24] 2025-11-26 23:34:53,416 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:35:24] 2025-11-26 23:34:53,416 | INFO     | ***************************************
[2025-11-26 18:35:24] 2025-11-26 23:34:53,417 | INFO     | 
[2025-11-26 18:35:24] 2025-11-26 23:34:53,419 | INFO     | architecture information:
[2025-11-26 18:35:24] 2025-11-26 23:34:53,427 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:35:24] 2025-11-26 23:34:53,504 | INFO     | cat /etc/os-release:
[2025-11-26 18:35:24] NAME="CentOS Linux"
[2025-11-26 18:35:24] VERSION="7 (Core)"
[2025-11-26 18:35:24] ID="centos"
[2025-11-26 18:35:24] ID_LIKE="rhel fedora"
[2025-11-26 18:35:24] VERSION_ID="7"
[2025-11-26 18:35:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:35:24] ANSI_COLOR="0;31"
[2025-11-26 18:35:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:35:24] HOME_URL="https://www.centos.org/"
[2025-11-26 18:35:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:35:24] 
[2025-11-26 18:35:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:35:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:35:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:35:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:35:24] 
[2025-11-26 18:35:24] 2025-11-26 23:34:53,504 | INFO     | ***************************************
[2025-11-26 18:35:24] 2025-11-26 23:34:54,020 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 18:35:24] 2025-11-26 23:34:54,062 | INFO     | sufficient remaining disk space (71033683968 B)
[2025-11-26 18:35:24] 2025-11-26 23:34:54,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:35:24] 2025-11-26 23:34:54,063 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:35:24] 2025-11-26 23:34:54,063 | INFO     | update_server=False
[2025-11-26 18:35:24] 2025-11-26 23:34:54,063 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:35:24] 2025-11-26 23:34:54,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:35:24] 2025-11-26 23:34:54,063 | INFO     | aborting loop
[2025-11-26 18:35:24] 2025-11-26 23:34:54,356 | INFO     | all job control threads have been joined
[2025-11-26 18:35:24] 2025-11-26 23:34:54,478 | INFO     | all data control threads have been joined
[2025-11-26 18:35:24] 2025-11-26 23:34:54,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:35:24] 2025-11-26 23:34:54,660 | INFO     | all payload control threads have been joined
[2025-11-26 18:35:24] 2025-11-26 23:34:54,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:35:24] 2025-11-26 23:34:55,068 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:55,070 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:55,367 | INFO     | [job] control thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:55,447 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:55,485 | INFO     | [data] control thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:55,499 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:55,572 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:55,573 | INFO     | [job] validate thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:55,626 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:55,665 | INFO     | [payload] control thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:56,093 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:35:24] 2025-11-26 23:34:56,511 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:56,511 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:56,512 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:56,568 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:57,107 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:34:58,993 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:35:24] 2025-11-26 23:35:16,054 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:35:24] 2025-11-26 23:35:16,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140463207601984)>', '<ExcThread(monitor, started 140462719485696)>']
[2025-11-26 18:35:24] 2025-11-26 23:35:21,772 | INFO     | all workflow threads have been joined
[2025-11-26 18:35:24] 2025-11-26 23:35:21,773 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:35:24] 2025-11-26 23:35:21,773 | INFO     | traces error code: 0
[2025-11-26 18:35:24] 2025-11-26 23:35:21,773 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:35:24] 2025-11-26 23:35:23,380 | INFO     | PID=1166442 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:35:24] 2025-11-26 23:35:23,385 | INFO     | .. there are 42 such processes running
[2025-11-26 18:35:24] 2025-11-26 23:35:23,385 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:35:24] 2025-11-26 23:35:23,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:35:24] 2025-11-26 23:35:23,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:35:24] 2025-11-26 23:35:23,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:35:24] 2025-11-26 23:35:23,385 | INFO     | [monitor] control thread has ended
[2025-11-26 18:35:24] 2025-11-26 23:35:23,608 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:35:24] 2025-11-26 23:35:23,639 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:35:24] 2025-11-26 23:35:23,654 [wrapper] pilotpid: 1166442
[2025-11-26 18:35:24] 2025-11-26 23:35:23,676 [wrapper] Pilot exit status: 0
[2025-11-26 18:35:24] 2025-11-26 23:35:23,781 [wrapper] pandaids: 6895651663
[2025-11-26 18:35:24] 2025-11-26 23:35:24,056 [wrapper] cleanup supervisor_pilot 3774060 1166443
[2025-11-26 18:35:24] 2025-11-26 23:35:24,060 [wrapper] Test setup, not cleaning
[2025-11-26 18:35:24] 2025-11-26 23:35:24,091 [wrapper] apfmon messages muted
[2025-11-26 18:35:24] 2025-11-26 23:35:24,111 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:35:24] 2025-11-26 23:35:24,160 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:35:24]  *** Error codes and diagnostics ***
[2025-11-26 18:35:24]     "exeErrorCode": 0,
[2025-11-26 18:35:24]     "exeErrorDiag": "",
[2025-11-26 18:35:24]     "pilotErrorCode": 0,
[2025-11-26 18:35:24]     "pilotErrorDiag": "",
[2025-11-26 18:35:24]  *** Listing of results directory ***
[2025-11-26 18:35:24] total 1333464
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 07:18 pilot3.tar.gz
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 07:31 queuedata.json
[2025-11-26 18:35:24] -rwx------. 1 boincer umatlas     36292 Nov 24 07:32 runpilot2-wrapper.sh
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas       100 Nov 25 12:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:35:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 12:42 run_atlas
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas       105 Nov 25 12:42 job.xml
[2025-11-26 18:35:24] -rw-r--r--. 2 boincer umatlas 408474400 Nov 25 12:42 EVNT.47483658._001335.pool.root.1
[2025-11-26 18:35:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:42 start_atlas.sh
[2025-11-26 18:35:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 12:42 shared
[2025-11-26 18:35:24] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 12:42 input.tar.gz
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas         0 Nov 25 12:42 boinc_lockfile
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 12:42 pandaJob.out
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas        57 Nov 25 12:42 setup.sh.local
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas    991543 Nov 25 12:42 agis_schedconf.cvmfs.json
[2025-11-26 18:35:24] drwx------. 5 boincer umatlas      4096 Nov 25 12:42 pilot3
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas       534 Nov 26 18:12 boinc_task_state.xml
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas      6661 Nov 26 18:28 init_data.xml
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas 921444537 Nov 26 18:33 HITS.47556149._003220.pool.root.1
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas      1076 Nov 26 18:34 memory_monitor_summary.json
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas   2675647 Nov 26 18:34 log.47556149._003220.job.log.tgz.1
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas        95 Nov 26 18:34 pilot_heartbeat.json
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas      8662 Nov 26 18:34 heartbeat.json
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas        30 Nov 26 18:35 wrapper_checkpoint.txt
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:35 boinc_mmap_file
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas       823 Nov 26 18:35 pilotlog.txt
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas  13135996 Nov 26 18:35 log.47556149._003220.job.log.1
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas       353 Nov 26 18:35 output.list
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:35 runtime_log
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas  15831040 Nov 26 18:35 result.tar.gz
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas      9334 Nov 26 18:35 runtime_log.err
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas       665 Nov 26 18:35 QDzNDmnukh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQ3IKDmSy5arm.diag
[2025-11-26 18:35:24] -rw-r--r--. 1 boincer umatlas     21576 Nov 26 18:35 stderr.txt
[2025-11-26 18:35:24] HITS file was successfully produced:
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas 921444537 Nov 26 18:33 shared/HITS.pool.root.1
[2025-11-26 18:35:24]  *** Contents of shared directory: ***
[2025-11-26 18:35:24] total 1314820
[2025-11-26 18:35:24] -rw-r--r--. 2 boincer umatlas 408474400 Nov 25 12:42 ATLAS.root_0
[2025-11-26 18:35:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:42 start_atlas.sh
[2025-11-26 18:35:24] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 12:42 input.tar.gz
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas 921444537 Nov 26 18:33 HITS.pool.root.1
[2025-11-26 18:35:24] -rw-------. 1 boincer umatlas  15831040 Nov 26 18:35 result.tar.gz
18:35:26 (1160141): run_atlas exited; CPU time 314887.473025
18:35:26 (1160141): called boinc_finish(0)

</stderr_txt>
]]>

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