Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
19:19:23 (112453): wrapper (7.7.26015): starting
19:19:23 (112453): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 05:32:18] Arguments: --nthreads 8
[2025-11-26 05:32:18] Threads: 8
[2025-11-26 05:32:18] Checking for CVMFS
[2025-11-26 05:32:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 05:32:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 05:32:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 05:32:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 05:32:18] 2.13.2.0 112669 0 24768 153279 3 1 64829 4194305 0 130560 0 0 0.000 1292 231 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-26 05:32:18] CVMFS is ok
[2025-11-26 05:32:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 05:32:18] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-26 05:32:18] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-26 05:32:18] Further information can be found at the LHC@home message board.
[2025-11-26 05:32:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 05:32:18] Checking for apptainer binary...
[2025-11-26 05:32:18] Using apptainer found in PATH at /usr/local/bin/apptainer
[2025-11-26 05:32:18] Running /usr/local/bin/apptainer --version
[2025-11-26 05:32:18] apptainer version 1.4.2+328-gce6609921
[2025-11-26 05:32:18] Checking apptainer works with /usr/local/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 05:32:18] ducatixeon3-PowerEdge-T620
[2025-11-26 05:32:18] apptainer works
[2025-11-26 05:32:18] Set ATHENA_PROC_NUMBER=8
[2025-11-26 05:32:18] Set ATHENA_CORE_NUMBER=8
[2025-11-26 05:32:18] Starting ATLAS job with PandaID=6895377415
[2025-11-26 05:32:18] Running command: /usr/local/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:32:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:32:18] 2025-11-25 21:31:27,884 | INFO     | time since job start (36487s) is within the limit (172800.0s)
[2025-11-26 05:32:18] 2025-11-25 21:31:28,185 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:32:18] 2025-11-25 21:31:28,185 | INFO     | job 6895377415 has state=finished
[2025-11-26 05:32:18] 2025-11-25 21:31:28,185 | INFO     | preparing for final server update for job 6895377415 in state='finished'
[2025-11-26 05:32:18] 2025-11-25 21:31:28,703 | INFO     | monitor loop #2696: job 0:6895377415 is in state 'finished'
[2025-11-26 05:32:18] 2025-11-25 21:31:28,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:32:18] 2025-11-25 21:31:29,890 | INFO     | time since job start (36489s) is within the limit (172800.0s)
[2025-11-26 05:32:18] 2025-11-25 21:31:30,385 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-11-26 05:32:18] 2025-11-25 21:31:30,386 | INFO     | this job has now completed (state=finished)
[2025-11-26 05:32:18] 2025-11-25 21:31:30,386 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 05:32:18] 2025-11-25 21:31:30,386 | INFO     | log transfer has been attempted: DONE
[2025-11-26 05:32:18] 2025-11-25 21:31:30,386 | INFO     | job 6895377415 has finished - writing final server update
[2025-11-26 05:32:18] 2025-11-25 21:31:30,386 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 05:32:18] 2025-11-25 21:31:30,388 | INFO     | executing command: lscpu
[2025-11-26 05:32:18] 2025-11-25 21:31:30,420 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 05:32:18] 2025-11-25 21:31:31,206 | INFO     | monitor loop #2697: job 0:6895377415 is in state 'finished'
[2025-11-26 05:32:18] 2025-11-25 21:31:31,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:32:18] 2025-11-25 21:31:31,895 | INFO     | time since job start (36491s) is within the limit (172800.0s)
[2025-11-26 05:32:18] 2025-11-25 21:31:33,372 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 05:32:18] 2025-11-25 21:31:33,377 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2579.9862500000004
[2025-11-26 05:32:18] 2025-11-25 21:31:33,381 | INFO     | using path: /var/lib/boinc-client/slots/13/PanDA_Pilot-6895377415/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:32:18] 2025-11-25 21:31:33,382 | INFO     | extracted standard info from prmon json
[2025-11-26 05:32:18] 2025-11-25 21:31:33,382 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:32:18] 2025-11-25 21:31:33,382 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:32:18] 2025-11-25 21:31:33,390 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:32:18] 2025-11-25 21:31:33,390 | INFO     | sum of square deviations: 65978159858.0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,396 | INFO     | sum of deviations: 1411602136185.9993
[2025-11-26 05:32:18] 2025-11-25 21:31:33,396 | INFO     | mean x: 1764088065.0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,396 | INFO     | mean y: 2767029.7906197654
[2025-11-26 05:32:18] 2025-11-25 21:31:33,397 | INFO     | intersect: -37739881239.48033
[2025-11-26 05:32:18] 2025-11-25 21:31:33,397 | INFO     | chi2: 26.431565022136414
[2025-11-26 05:32:18] 2025-11-25 21:31:33,398 | INFO     | sum of square deviations: 64334259268.0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,403 | INFO     | sum of deviations: 1587914440012.5
[2025-11-26 05:32:18] 2025-11-25 21:31:33,404 | INFO     | mean x: 1764087912.5
[2025-11-26 05:32:18] 2025-11-25 21:31:33,404 | INFO     | mean y: 2783386.8868243243
[2025-11-26 05:32:18] 2025-11-25 21:31:33,404 | INFO     | intersect: -43538880130.85248
[2025-11-26 05:32:18] 2025-11-25 21:31:33,404 | INFO     | chi2: 23.725318698579667
[2025-11-26 05:32:18] 2025-11-25 21:31:33,405 | INFO     | current chi2=23.725318698579667 (change=10.238691206102509 %)
[2025-11-26 05:32:18] 2025-11-25 21:31:33,405 | INFO     | right removable region: 591
[2025-11-26 05:32:18] 2025-11-25 21:31:33,405 | INFO     | sum of square deviations: 64334259268.0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,411 | INFO     | sum of deviations: 1173105590376.5
[2025-11-26 05:32:18] 2025-11-25 21:31:33,411 | INFO     | mean x: 1764088217.5
[2025-11-26 05:32:18] 2025-11-25 21:31:33,411 | INFO     | mean y: 2789149.7449324327
[2025-11-26 05:32:18] 2025-11-25 21:31:33,411 | INFO     | intersect: -32164547094.008472
[2025-11-26 05:32:18] 2025-11-25 21:31:33,412 | INFO     | chi2: 21.40578821457668
[2025-11-26 05:32:18] 2025-11-25 21:31:33,412 | INFO     | current chi2=21.40578821457668 (change=19.0142990146465 %)
[2025-11-26 05:32:18] 2025-11-25 21:31:33,412 | INFO     | left removable region: 10
[2025-11-26 05:32:18] 2025-11-25 21:31:33,413 | INFO     | sum of square deviations: 60814275130.0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,418 | INFO     | sum of deviations: 1195869844358.0002
[2025-11-26 05:32:18] 2025-11-25 21:31:33,418 | INFO     | mean x: 1764088187.0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,419 | INFO     | mean y: 2827782.285714286
[2025-11-26 05:32:18] 2025-11-25 21:31:33,419 | INFO     | intersect: -34686722674.60677
[2025-11-26 05:32:18] 2025-11-25 21:31:33,419 | INFO     | chi2: 15.01641235936622
[2025-11-26 05:32:18] 2025-11-25 21:31:33,419 | INFO     | current memory leak: 19.66 B/s (using 581 data points, chi2=15.02)
[2025-11-26 05:32:18] 2025-11-25 21:31:33,420 | INFO     | could have reported an average CPU frequency of 2474 MHz (24 samples)
[2025-11-26 05:32:18] 2025-11-25 21:31:33,420 | INFO     | ..............................
[2025-11-26 05:32:18] 2025-11-25 21:31:33,420 | INFO     | . Timing measurements:
[2025-11-26 05:32:18] 2025-11-25 21:31:33,420 | INFO     | . get job = 0 s
[2025-11-26 05:32:18] 2025-11-25 21:31:33,420 | INFO     | . initial setup = 33 s
[2025-11-26 05:32:18] 2025-11-25 21:31:33,420 | INFO     | . payload setup = 64 s
[2025-11-26 05:32:18] 2025-11-25 21:31:33,420 | INFO     | . stage-in = 0 s
[2025-11-26 05:32:18] 2025-11-25 21:31:33,421 | INFO     | . payload execution = 36388 s
[2025-11-26 05:32:18] 2025-11-25 21:31:33,421 | INFO     | . stage-out = 9 s
[2025-11-26 05:32:18] 2025-11-25 21:31:33,421 | INFO     | . log creation = 0 s
[2025-11-26 05:32:18] 2025-11-25 21:31:33,421 | INFO     | ..............................
[2025-11-26 05:32:18] 2025-11-25 21:31:33,822 | INFO     | 
[2025-11-26 05:32:18] 2025-11-25 21:31:33,822 | INFO     | job summary report
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | --------------------------------------------------
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | PanDA job id: 6895377415
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | task id: 47556137
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | errors: (none)
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | pilot state: finished 
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | transexitcode: 0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | exeerrorcode: 0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | exeerrordiag: 
[2025-11-26 05:32:18] 2025-11-25 21:31:33,823 | INFO     | exitcode: 0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,824 | INFO     | exitmsg: OK
[2025-11-26 05:32:18] 2025-11-25 21:31:33,824 | INFO     | cpuconsumptiontime: 267753 s
[2025-11-26 05:32:18] 2025-11-25 21:31:33,824 | INFO     | nevents: 1000
[2025-11-26 05:32:18] 2025-11-25 21:31:33,824 | INFO     | neventsw: 0
[2025-11-26 05:32:18] 2025-11-25 21:31:33,824 | INFO     | pid: 123687
[2025-11-26 05:32:18] 2025-11-25 21:31:33,825 | INFO     | pgrp: 123687
[2025-11-26 05:32:18] 2025-11-25 21:31:33,825 | INFO     | corecount: 8
[2025-11-26 05:32:18] 2025-11-25 21:31:33,825 | INFO     | event service: False
[2025-11-26 05:32:18] 2025-11-25 21:31:33,825 | INFO     | sizes: {0: 2283486, 2: 2284179, 3: 2284378, 7: 2284640, 13: 2284668, 36456: 2326417, 36466: 2335427, 36467: 2335483, 36475: 2335729}
[2025-11-26 05:32:18] 2025-11-25 21:31:33,825 | INFO     | --------------------------------------------------
[2025-11-26 05:32:18] 2025-11-25 21:31:33,825 | INFO     | 
[2025-11-26 05:32:18] 2025-11-25 21:31:33,825 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/13
[2025-11-26 05:32:18] 2025-11-25 21:31:33,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,840 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,842 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,842 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,842 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,842 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:32:18] 2025-11-25 21:31:33,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,842 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:32:18] 2025-11-25 21:31:33,842 | INFO     | job 6895377415 has completed (purged errors)
[2025-11-26 05:32:18] 2025-11-25 21:31:33,842 | INFO     | overall cleanup function is called
[2025-11-26 05:32:18] 2025-11-25 21:31:34,856 | INFO     | --- collectZombieJob: --- 10, [123687]
[2025-11-26 05:32:18] 2025-11-25 21:31:34,857 | INFO     | zombie collector waiting for pid 123687
[2025-11-26 05:32:18] 2025-11-25 21:31:34,857 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:32:18] 2025-11-25 21:31:34,857 | INFO     | collected zombie processes
[2025-11-26 05:32:18] 2025-11-25 21:31:34,857 | INFO     | will attempt to kill all subprocesses of pid=123687
[2025-11-26 05:32:18] 2025-11-25 21:31:35,015 | INFO     | process IDs to be killed: [123687] (in reverse order)
[2025-11-26 05:32:18] 2025-11-25 21:31:35,063 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:32:18] 2025-11-25 21:31:35,063 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:32:18] 2025-11-25 21:31:35,067 | INFO     | did not find any defunct processes belonging to 123687
[2025-11-26 05:32:18] 2025-11-25 21:31:35,071 | INFO     | did not find any defunct processes belonging to 123687
[2025-11-26 05:32:18] 2025-11-25 21:31:35,072 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:32:18] 2025-11-25 21:31:35,073 | INFO     | ready for new job
[2025-11-26 05:32:18] 2025-11-25 21:31:35,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:32:18] 2025-11-25 21:31:35,075 | INFO     | ***************************************
[2025-11-26 05:32:18] 2025-11-25 21:31:35,075 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:32:18] 2025-11-25 21:31:35,075 | INFO     | ***************************************
[2025-11-26 05:32:18] 2025-11-25 21:31:35,076 | INFO     | 
[2025-11-26 05:32:18] 2025-11-25 21:31:35,077 | INFO     | architecture information:
[2025-11-26 05:32:18] 2025-11-25 21:31:35,077 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:32:18] 2025-11-25 21:31:35,089 | INFO     | cat /etc/os-release:
[2025-11-26 05:32:18] NAME="CentOS Linux"
[2025-11-26 05:32:18] VERSION="7 (Core)"
[2025-11-26 05:32:18] ID="centos"
[2025-11-26 05:32:18] ID_LIKE="rhel fedora"
[2025-11-26 05:32:18] VERSION_ID="7"
[2025-11-26 05:32:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:32:18] ANSI_COLOR="0;31"
[2025-11-26 05:32:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:32:18] HOME_URL="https://www.centos.org/"
[2025-11-26 05:32:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:32:18] 
[2025-11-26 05:32:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:32:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:32:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:32:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:32:18] 
[2025-11-26 05:32:18] 2025-11-25 21:31:35,089 | INFO     | ***************************************
[2025-11-26 05:32:18] 2025-11-25 21:31:35,592 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/13
[2025-11-26 05:32:18] 2025-11-25 21:31:35,604 | INFO     | sufficient remaining disk space (445241098240 B)
[2025-11-26 05:32:18] 2025-11-25 21:31:35,604 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:32:18] 2025-11-25 21:31:35,604 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:32:18] 2025-11-25 21:31:35,605 | INFO     | update_server=False
[2025-11-26 05:32:18] 2025-11-25 21:31:35,605 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:32:18] 2025-11-25 21:31:35,605 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:32:18] 2025-11-25 21:31:35,605 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:32:18] 2025-11-25 21:31:35,605 | INFO     | aborting loop
[2025-11-26 05:32:18] 2025-11-25 21:31:35,804 | INFO     | all data control threads have been joined
[2025-11-26 05:32:18] 2025-11-25 21:31:35,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:32:18] 2025-11-25 21:31:36,417 | INFO     | all job control threads have been joined
[2025-11-26 05:32:18] 2025-11-25 21:31:36,610 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:36,611 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:36,739 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:36,810 | INFO     | [data] control thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:36,950 | INFO     | all payload control threads have been joined
[2025-11-26 05:32:18] 2025-11-25 21:31:37,319 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:37,422 | INFO     | [job] control thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:37,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:37,611 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:37,687 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:37,832 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:37,896 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:37,955 | INFO     | [payload] control thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:38,099 | INFO     | [job] validate thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:38,167 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:38,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:32:18] 2025-11-25 21:31:39,504 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:31:39,927 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:32:18] 2025-11-25 21:32:05,178 | INFO     | PID=116940 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 05:32:18] 2025-11-25 21:32:05,179 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:32:18] 2025-11-25 21:32:05,180 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:32:18] 2025-11-25 21:32:05,180 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:32:18] 2025-11-25 21:32:11,424 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:32:18] 2025-11-25 21:32:12,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138253555185472)>', '<ExcThread(monitor, started 138252849772288)>']
[2025-11-26 05:32:18] 2025-11-25 21:32:13,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:32:18] 2025-11-25 21:32:13,220 | INFO     | [monitor] control thread has ended
[2025-11-26 05:32:18] 2025-11-25 21:32:17,479 | INFO     | all workflow threads have been joined
[2025-11-26 05:32:18] 2025-11-25 21:32:17,479 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:32:18] 2025-11-25 21:32:17,479 | INFO     | traces error code: 0
[2025-11-26 05:32:18] 2025-11-25 21:32:17,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:32:18] 2025-11-25 21:32:17,582 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:32:18] 2025-11-25 21:32:17,584 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:32:18] 2025-11-25 21:32:17,587 [wrapper] pilotpid: 116940
[2025-11-26 05:32:18] 2025-11-25 21:32:17,589 [wrapper] Pilot exit status: 0
[2025-11-26 05:32:18] 2025-11-25 21:32:17,597 [wrapper] pandaids: 6895377415
[2025-11-26 05:32:18] 2025-11-25 21:32:17,630 [wrapper] cleanup supervisor_pilot  285225 116941
[2025-11-26 05:32:18] 2025-11-25 21:32:17,632 [wrapper] Test setup, not cleaning
[2025-11-26 05:32:18] 2025-11-25 21:32:17,634 [wrapper] apfmon messages muted
[2025-11-26 05:32:18] 2025-11-25 21:32:17,637 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:32:18] 2025-11-25 21:32:17,639 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:32:18]  *** Error codes and diagnostics ***
[2025-11-26 05:32:18]     "exeErrorCode": 0,
[2025-11-26 05:32:18]     "exeErrorDiag": "",
[2025-11-26 05:32:18]     "pilotErrorCode": 0,
[2025-11-26 05:32:18]     "pilotErrorDiag": "",
[2025-11-26 05:32:18]  *** Listing of results directory ***
[2025-11-26 05:32:18] total 1320808
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc    576529 Nov 24 08:34 pilot3.tar.gz
[2025-11-26 05:32:18] -rwx------ 1 boinc boinc     36292 Nov 24 08:51 runpilot2-wrapper.sh
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc      5112 Nov 24 08:51 queuedata.json
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc       100 Nov 25 19:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:32:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 19:19 run_atlas
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc       105 Nov 25 19:19 job.xml
[2025-11-26 05:32:18] -rw-r--r-- 2 boinc boinc 412904525 Nov 25 19:19 EVNT.47483658._000968.pool.root.1
[2025-11-26 05:32:18] -rw-r--r-- 2 boinc boinc     15847 Nov 25 19:19 start_atlas.sh
[2025-11-26 05:32:18] drwxrwx--x 2 boinc boinc      4096 Nov 25 19:19 shared
[2025-11-26 05:32:18] -rw-r--r-- 2 boinc boinc    590098 Nov 25 19:19 input.tar.gz
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc         0 Nov 25 19:19 boinc_setup_complete
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc      6012 Nov 25 19:19 init_data.xml
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc       110 Nov 25 19:19 stderr.txt
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc         0 Nov 25 19:19 boinc_lockfile
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc      2785 Nov 25 19:19 pandaJob.out
[2025-11-26 05:32:18] -rw------- 1 boinc boinc    991894 Nov 25 19:22 agis_schedconf.cvmfs.json
[2025-11-26 05:32:18] drwx------ 5 boinc boinc      4096 Nov 25 19:23 pilot3
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc       533 Nov 26 05:17 boinc_task_state.xml
[2025-11-26 05:32:18] -rw------- 1 boinc boinc 921922259 Nov 26 05:30 HITS.47556137._009543.pool.root.1
[2025-11-26 05:32:18] -rw------- 1 boinc boinc      1046 Nov 26 05:31 memory_monitor_summary.json
[2025-11-26 05:32:18] -rw------- 1 boinc boinc   1516240 Nov 26 05:31 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:32:18] -rw------- 1 boinc boinc   1855610 Nov 26 05:31 log.47556137._009543.job.log.tgz.1
[2025-11-26 05:32:18] -rw------- 1 boinc boinc      8642 Nov 26 05:31 heartbeat.json
[2025-11-26 05:32:18] -rw------- 1 boinc boinc        95 Nov 26 05:32 pilot_heartbeat.json
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc        29 Nov 26 05:32 wrapper_checkpoint.txt
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc      8192 Nov 26 05:32 boinc_mmap_file
[2025-11-26 05:32:18] -rw------- 1 boinc boinc      4756 Nov 26 05:32 pilotlog.txt
[2025-11-26 05:32:18] -rw------- 1 boinc boinc   5034466 Nov 26 05:32 log.47556137._009543.job.log.1
[2025-11-26 05:32:18] -rw------- 1 boinc boinc       353 Nov 26 05:32 output.list
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc       620 Nov 26 05:32 runtime_log
[2025-11-26 05:32:18] -rw------- 1 boinc boinc   6912000 Nov 26 05:32 result.tar.gz
[2025-11-26 05:32:18] -rw------- 1 boinc boinc       671 Nov 26 05:32 ZhOLDmSyZh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmrIKDmJR530m.diag
[2025-11-26 05:32:18] -rw-r--r-- 1 boinc boinc      8995 Nov 26 05:32 runtime_log.err
[2025-11-26 05:32:18] HITS file was successfully produced:
[2025-11-26 05:32:18] -rw------- 1 boinc boinc 921922259 Nov 26 05:30 shared/HITS.pool.root.1
[2025-11-26 05:32:18]  *** Contents of shared directory: ***
[2025-11-26 05:32:18] total 1310896
[2025-11-26 05:32:18] -rw-r--r-- 2 boinc boinc 412904525 Nov 25 19:19 ATLAS.root_0
[2025-11-26 05:32:18] -rw-r--r-- 2 boinc boinc     15847 Nov 25 19:19 start_atlas.sh
[2025-11-26 05:32:18] -rw-r--r-- 2 boinc boinc    590098 Nov 25 19:19 input.tar.gz
[2025-11-26 05:32:18] -rw------- 1 boinc boinc 921922259 Nov 26 05:30 HITS.pool.root.1
[2025-11-26 05:32:18] -rw------- 1 boinc boinc   6912000 Nov 26 05:32 result.tar.gz
05:32:19 (112453): run_atlas exited; CPU time 268498.192566
05:32:19 (112453): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN