Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 12:07:05 (66242): vboxwrapper version 26210
2025-11-25 12:07:05 (66242): BOINC client version: 8.2.5
2025-11-25 12:07:05 (66242): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-11-25 12:07:05 (66242): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 12:07:05 (66242): Create VM. (boinc_4865e2b9bfd2436d, slot#1)
2025-11-25 12:07:06 (66242): Setting Memory Size for VM. (4800MB)
2025-11-25 12:07:06 (66242): Setting CPU Count for VM. (8)
2025-11-25 12:07:06 (66242): Setting Chipset Options for VM.
2025-11-25 12:07:06 (66242): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 12:07:06 (66242): Setting Boot Options for VM.
2025-11-25 12:07:06 (66242): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 12:07:06 (66242): Enabling VM Network Access.
2025-11-25 12:07:06 (66242): Disabling USB Support for VM.
2025-11-25 12:07:06 (66242): Disabling COM Port Support for VM.
2025-11-25 12:07:06 (66242): Disabling LPT Port Support for VM.
2025-11-25 12:07:06 (66242): Disabling Audio Support for VM.
2025-11-25 12:07:06 (66242): Disabling Clipboard Support for VM.
2025-11-25 12:07:07 (66242): Disabling Drag and Drop Support for VM.
2025-11-25 12:07:07 (66242): Adding storage controller(s) to VM.
2025-11-25 12:07:07 (66242): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 12:07:07 (66242): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 12:07:07 (66242): forwarding host port 33701 to guest port 80
2025-11-25 12:07:07 (66242): Enabling remote desktop for VM.
2025-11-25 12:07:07 (66242): Enabling shared directory for VM.
2025-11-25 12:07:07 (66242): Starting VM using VBoxManage interface. (boinc_4865e2b9bfd2436d, slot#1)
2025-11-25 12:07:09 (66242): Successfully started VM. (PID = '66682')
2025-11-25 12:07:09 (66242): Reporting VM Process ID to BOINC.
2025-11-25 12:07:09 (66242): Guest Log: BIOS: VirtualBox 7.2.2
2025-11-25 12:07:09 (66242): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 12:07:09 (66242): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 12:07:09 (66242): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 12:07:09 (66242): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 12:07:09 (66242): Detected: Web Application Enabled (http://localhost:33701)
2025-11-25 12:07:09 (66242): Detected: Remote Desktop Enabled (localhost:55131)
2025-11-25 12:07:09 (66242): Preference change detected
2025-11-25 12:07:09 (66242): Setting CPU throttle for VM. (100%)
2025-11-25 12:07:09 (66242): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 12:07:11 (66242): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 12:07:11 (66242): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 12:07:14 (66242): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 12:07:14 (66242): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 12:07:14 (66242): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 12:07:20 (66242): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 12:07:20 (66242): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 12:07:26 (66242): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 12:07:26 (66242): Guest Log: 00:00:00.000172 main     Log opened 2025-11-25T11:07:24.880757000Z
2025-11-25 12:07:26 (66242): Guest Log: 00:00:00.000356 main     OS Product: Linux
2025-11-25 12:07:26 (66242): Guest Log: 00:00:00.000395 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 12:07:26 (66242): Guest Log: 00:00:00.000423 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 12:07:26 (66242): Guest Log: 00:00:00.000450 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 12:07:26 (66242): Guest Log: 00:00:00.000450 main     Process ID: 1376
2025-11-25 12:07:26 (66242): Guest Log: 00:00:00.000451 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 12:07:26 (66242): Guest Log: 00:00:00.002020 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 12:07:27 (66242): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 12:07:27 (66242): Guest Log: [INFO] Mounting shared directory
2025-11-25 12:07:27 (66242): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 12:07:49 (66242): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 12:07:49 (66242): Guest Log: [INFO] Detected branch: prod
2025-11-25 12:07:49 (66242): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 12:07:49 (66242): Guest Log: Copying input files
2025-11-25 12:07:51 (66242): Guest Log: Copied input files into RunAtlas.
2025-11-25 12:07:51 (66242): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 12:07:51 (66242): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 12:07:51 (66242): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 12:07:51 (66242): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 12:07:59 (66242): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 12:07:59 (66242): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 12:07:59 (66242): Guest Log: 2.6.3.0 1654 0 30168 153279 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 12:08:00 (66242): Guest Log: copied the webapp to /var/www
2025-11-25 12:08:00 (66242): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-25 12:08:00 (66242): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-25 12:08:00 (66242): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 12:08:00 (66242): Guest Log:  *** Starting ATLAS job. (PandaID=6895375020 taskID=47556137) ***
2025-11-25 13:46:09 (66242): Status Report: Elapsed Time: '6000.000000'
2025-11-25 13:46:09 (66242): Status Report: CPU Time: '44903.360000'
2025-11-25 15:25:10 (66242): Status Report: Elapsed Time: '12000.000000'
2025-11-25 15:25:10 (66242): Status Report: CPU Time: '91234.540000'
2025-11-25 17:04:10 (66242): Status Report: Elapsed Time: '18000.000000'
2025-11-25 17:04:10 (66242): Status Report: CPU Time: '137764.580000'
2025-11-25 18:09:25 (66242): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 18:11:26 (66242): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 18:18:22 (66242): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 19:33:52 (66242): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 19:34:00 (66242): Guest Log: 06:09:04.405471 timesync vgsvcTimeSyncWorker: Radical host time change: 4 540 012 000 000ns (HostNow=1 764 095 639 624 000 000 ns HostLast=1 764 091 099 612 000 000 ns)
2025-11-25 19:34:10 (66242): Guest Log: 06:09:14.407573 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 660 351 152 000ns (GuestNow=1 764 095 649 626 196 000 ns GuestLast=1 764 090 989 275 044 000 ns fSetTimeLastLoop=true )
2025-11-25 19:57:06 (66242): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 19:59:07 (66242): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 20:02:45 (66242): Status Report: Elapsed Time: '24000.000000'
2025-11-25 20:02:45 (66242): Status Report: CPU Time: '184405.640000'
2025-11-25 20:14:33 (66242): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 20:16:14 (66242): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 20:20:06 (66242): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 20:20:35 (66242): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 20:49:44 (66242): Guest Log:  *** Job finished ***
2025-11-25 20:49:44 (66242): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:05,344 | INFO     | [job] queue monitor thread has finished
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:05,391 | INFO     | [data] queue_monitor thread has finished
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:27,596 | INFO     | [monitor] cgroup control has ended
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:28,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140716854355776)>', '<ExcThread(monitor, started 140716256773888)>']
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:29,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:29,535 | INFO     | [monitor] control thread has ended
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,680 | INFO     | all workflow threads have been joined
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,681 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,681 | INFO     | traces error code: 0
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,750 [wrapper] ==== pilot stdout END ====
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,755 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,758 [wrapper] pilotpid: 6088
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,762 [wrapper] Pilot exit status: 0
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,775 [wrapper] pandaids: 6895375020
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,810 [wrapper] cleanup supervisor_pilot  2510 6089
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,814 [wrapper] Test setup, not cleaning
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,818 [wrapper] apfmon messages muted
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,822 [wrapper] ==== wrapper stdout END ====
2025-11-25 20:49:44 (66242): Guest Log: 2025-11-25 19:45:33,825 [wrapper] ==== wrapper stderr END ====
2025-11-25 20:49:44 (66242): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 20:49:44 (66242): Guest Log:     "exeErrorCode": 0,
2025-11-25 20:49:44 (66242): Guest Log:     "exeErrorDiag": "",
2025-11-25 20:49:44 (66242): Guest Log:     "pilotErrorCode": 0,
2025-11-25 20:49:44 (66242): Guest Log:     "pilotErrorDiag": "",
2025-11-25 20:49:44 (66242): Guest Log:  *** Listing of results directory ***
2025-11-25 20:49:44 (66242): Guest Log: total 918600
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 23:11 pilot3.tar.gz
2025-11-25 20:49:44 (66242): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 23:36 runpilot2-wrapper.sh
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 23:36 queuedata.json
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 atlas atlas      6224 Nov 25 11:07 init_data.xml
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 25 11:07 start_atlas.sh
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 atlas atlas    590099 Nov 25 11:07 input.tar.gz
2025-11-25 20:49:44 (66242): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 11:07 EVNT.47483658._000949.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 25 11:07 pandaJob.out
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas    991894 Nov 25 11:08 agis_schedconf.cvmfs.json
2025-11-25 20:49:44 (66242): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 11:08 pilot3
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas 926436040 Nov 25 19:44 HITS.47556137._009353.pool.root.1
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas        97 Nov 25 19:44 pilot_heartbeat.json
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas      1031 Nov 25 19:44 memory_monitor_summary.json
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 19:44 agis_ddmendpoints.agis.ALL.json
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas   1727466 Nov 25 19:44 log.47556137._009353.job.log.tgz.1
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas      8618 Nov 25 19:44 heartbeat.json
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas      4798 Nov 25 19:45 pilotlog.txt
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas   3459034 Nov 25 19:45 log.47556137._009353.job.log.1
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 19:45 output.list
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 19:45 runtime_log
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas   5201920 Nov 25 19:45 result.tar.gz
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 atlas atlas      8765 Nov 25 19:45 runtime_log.err
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas       666 Nov 25 19:45 NsJKDm0nYh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3HLKDmaKwLan.diag
2025-11-25 20:49:44 (66242): Guest Log: Looking for outputfile HITS.47556137._009353.pool.root.1
2025-11-25 20:49:44 (66242): Guest Log: HITS file was successfully produced
2025-11-25 20:49:44 (66242): Guest Log: -rw-------. 1 atlas atlas 926436040 Nov 25 19:44 /home/atlas/RunAtlas/HITS.47556137._009353.pool.root.1
2025-11-25 20:49:44 (66242): Guest Log: Successfully finished the ATLAS job!
2025-11-25 20:49:44 (66242): Guest Log: Copying the results back to the shared directory!
2025-11-25 20:49:44 (66242): Guest Log:  *** Contents of shared directory: ***
2025-11-25 20:49:44 (66242): Guest Log: total 404436
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 root root 408314781 Nov 25 11:07 ATLAS.root_0
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 root root      6224 Nov 25 11:07 init_data.xml
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 root root    590099 Nov 25 11:07 input.tar.gz
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 root root   5201920 Nov 25  2025 result.tar.gz
2025-11-25 20:49:44 (66242): Guest Log: -rw-r--r--. 1 root root     15847 Nov 25 11:07 start_atlas.sh
2025-11-25 20:49:44 (66242): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 20:49:44 (66242): VM Completion File Detected.
2025-11-25 20:49:44 (66242): Powering off VM.
2025-11-25 20:49:45 (66242): Successfully stopped VM.
2025-11-25 20:49:45 (66242): Deregistering VM. (boinc_4865e2b9bfd2436d, slot#1)
2025-11-25 20:49:45 (66242): Removing network bandwidth throttle group from VM.
2025-11-25 20:49:45 (66242): Removing VM from VirtualBox.
2025-11-25 20:49:50 (66242): called boinc_finish(0)

</stderr_txt>
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