Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:58:02 (29292): wrapper (7.7.26015): starting
16:58:02 (29292): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 16:58:02] Arguments: --nthreads 4
[2025-11-25 16:58:02] Threads: 4
[2025-11-25 16:58:02] Checking for CVMFS
[2025-11-25 16:58:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:58:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:58:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:58:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:58:03] 2.11.0.0 4010 64265 88184 153287 4 1 2985949 4096001 0 130560 1 3276051 99.412 4723767 551 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-25 16:58:03] CVMFS is ok
[2025-11-25 16:58:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:58:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:58:03] Further information can be found at the LHC@home message board.
[2025-11-25 16:58:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:58:03] Checking for apptainer binary...
[2025-11-25 16:58:03] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-25 16:58:03] apptainer is not installed, using version from CVMFS
[2025-11-25 16:58:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:58:04] WARNING: Environment variable TMPDIR already has value [/tmp/job_10924385/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node299
[2025-11-25 16:58:04] apptainer works
[2025-11-25 16:58:04] Set ATHENA_PROC_NUMBER=4
[2025-11-25 16:58:04] Set ATHENA_CORE_NUMBER=4
[2025-11-25 16:58:04] Starting ATLAS job with PandaID=6894053171
[2025-11-25 16:58:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10924385/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:41:31]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:41:31] 2025-11-25 18:40:28,108 | INFO     | sum of deviations: 59718872418.5
[2025-11-25 19:41:31] 2025-11-25 18:40:28,108 | INFO     | mean x: 1764091020.5
[2025-11-25 19:41:31] 2025-11-25 18:40:28,108 | INFO     | mean y: 2343523.0974025973
[2025-11-25 19:41:31] 2025-11-25 18:40:28,109 | INFO     | intersect: -93024934683.50308
[2025-11-25 19:41:31] 2025-11-25 18:40:28,109 | INFO     | chi2: 5.228225766792176
[2025-11-25 19:41:31] 2025-11-25 18:40:28,109 | INFO     | current chi2=5.228225766792176 (change=-0.2716985106525915 %)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,109 | INFO     | right removable region: 153
[2025-11-25 19:41:31] 2025-11-25 18:40:28,109 | INFO     | sum of square deviations: 1132458442.5
[2025-11-25 19:41:31] 2025-11-25 18:40:28,109 | INFO     | sum of deviations: 11363643243.5
[2025-11-25 19:41:31] 2025-11-25 18:40:28,121 | INFO     | mean x: 1764091325.5
[2025-11-25 19:41:31] 2025-11-25 18:40:28,121 | INFO     | mean y: 2413293.0714285714
[2025-11-25 19:41:31] 2025-11-25 18:40:28,121 | INFO     | intersect: -17699343980.847286
[2025-11-25 19:41:31] 2025-11-25 18:40:28,121 | INFO     | chi2: 0.747206391555219
[2025-11-25 19:41:31] 2025-11-25 18:40:28,121 | INFO     | current chi2=0.747206391555219 (change=85.6693919962015 %)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,122 | INFO     | sum of square deviations: 1025693650.0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,122 | INFO     | sum of deviations: -4950784948.999998
[2025-11-25 19:41:31] 2025-11-25 18:40:28,122 | INFO     | mean x: 1764091478.0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,122 | INFO     | mean y: 2436293.711409396
[2025-11-25 19:41:31] 2025-11-25 18:40:28,122 | INFO     | intersect: 8517296006.39615
[2025-11-25 19:41:31] 2025-11-25 18:40:28,122 | INFO     | chi2: 0.08758823120272706
[2025-11-25 19:41:31] 2025-11-25 18:40:28,122 | INFO     | current chi2=0.08758823120272706 (change=88.27790658743928 %)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,122 | INFO     | sum of square deviations: 925859220.0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,123 | INFO     | sum of deviations: 2119833386.9999995
[2025-11-25 19:41:31] 2025-11-25 18:40:28,123 | INFO     | mean x: 1764091630.5
[2025-11-25 19:41:31] 2025-11-25 18:40:28,123 | INFO     | mean y: 2425446.5833333335
[2025-11-25 19:41:31] 2025-11-25 18:40:28,123 | INFO     | intersect: -4036612298.335561
[2025-11-25 19:41:31] 2025-11-25 18:40:28,123 | INFO     | chi2: 0.0024659617918089153
[2025-11-25 19:41:31] 2025-11-25 18:40:28,123 | INFO     | current chi2=0.0024659617918089153 (change=97.18459688254084 %)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,123 | INFO     | sum of square deviations: 832722590.0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,123 | INFO     | sum of deviations: 1158599169.0000002
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | mean x: 1764091783.0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | mean y: 2427016.021582734
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | intersect: -2452022158.731235
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | chi2: 0.001285922436677356
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | current chi2=0.001285922436677356 (change=47.85310782394309 %)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | sum of square deviations: 746051197.5
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | sum of deviations: 891052132.0000001
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | mean x: 1764091935.5
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | mean y: 2427483.1343283583
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | intersect: -2104529633.8017137
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | chi2: 0.0012036124359537277
[2025-11-25 19:41:31] 2025-11-25 18:40:28,124 | INFO     | current chi2=0.0012036124359537277 (change=6.400852677888247 %)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,125 | INFO     | left removable region: 50
[2025-11-25 19:41:31] 2025-11-25 18:40:28,125 | INFO     | sum of square deviations: 338804492.0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,125 | INFO     | sum of deviations: 293660343.9999999
[2025-11-25 19:41:31] 2025-11-25 18:40:28,125 | INFO     | mean x: 1764092515.0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,125 | INFO     | mean y: 2429099.0388349514
[2025-11-25 19:41:31] 2025-11-25 18:40:28,125 | INFO     | intersect: -1526606161.8122075
[2025-11-25 19:41:31] 2025-11-25 18:40:28,125 | INFO     | chi2: 0.0010833619352597045
[2025-11-25 19:41:31] 2025-11-25 18:40:28,125 | INFO     | current memory leak: 0.87 B/s (using 103 data points, chi2=0.00)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,125 | INFO     | could have reported an average CPU frequency of 2725 MHz (9 samples)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | ..............................
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | . Timing measurements:
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | . get job = 0 s
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | . initial setup = 1 s
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | . payload setup = 48 s
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | . stage-in = 0 s
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | . payload execution = 9668 s
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | . stage-out = 0 s
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | . log creation = 0 s
[2025-11-25 19:41:31] 2025-11-25 18:40:28,126 | INFO     | ..............................
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | 
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | job summary report
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | --------------------------------------------------
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | PanDA job id: 6894053171
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | task id: 47523618
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | errors: (none)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | pilot state: finished 
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | transexitcode: 0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,194 | INFO     | exeerrorcode: 0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | exeerrordiag: 
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | exitcode: 0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | exitmsg: OK
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | cpuconsumptiontime: 35186 s
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | nevents: 400
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | neventsw: 0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | pid: 7615
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | pgrp: 7615
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | corecount: 4
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | event service: False
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | sizes: {0: 2284075, 2: 2284337, 11: 2284365, 9720: 2312825, 9721: 2312824, 9722: 2321908, 9724: 2322092, 9725: 2322350}
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | --------------------------------------------------
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | 
[2025-11-25 19:41:31] 2025-11-25 18:40:28,195 | INFO     | executing command: ls -lF /tmp/job_10924385/atlas/pilot/slots/0
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,205 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,205 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:41:31] 2025-11-25 18:40:28,205 | INFO     | job 6894053171 has completed (purged errors)
[2025-11-25 19:41:31] 2025-11-25 18:40:28,205 | INFO     | overall cleanup function is called
[2025-11-25 19:41:31] 2025-11-25 18:40:29,211 | INFO     | --- collectZombieJob: --- 10, [7615]
[2025-11-25 19:41:31] 2025-11-25 18:40:29,211 | INFO     | zombie collector waiting for pid 7615
[2025-11-25 19:41:31] 2025-11-25 18:40:29,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:41:31] 2025-11-25 18:40:29,211 | INFO     | collected zombie processes
[2025-11-25 19:41:31] 2025-11-25 18:40:29,211 | INFO     | will attempt to kill all subprocesses of pid=7615
[2025-11-25 19:41:31] 2025-11-25 18:40:29,349 | INFO     | process IDs to be killed: [7615] (in reverse order)
[2025-11-25 19:41:31] 2025-11-25 18:40:29,402 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:41:31] 2025-11-25 18:40:29,402 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:41:31] 2025-11-25 18:40:29,409 | INFO     | did not find any defunct processes belonging to 7615
[2025-11-25 19:41:31] 2025-11-25 18:40:29,414 | INFO     | did not find any defunct processes belonging to 7615
[2025-11-25 19:41:31] 2025-11-25 18:40:29,414 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:41:31] 2025-11-25 18:40:29,414 | INFO     | ready for new job
[2025-11-25 19:41:31] 2025-11-25 18:40:29,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:41:31] 2025-11-25 18:40:29,415 | INFO     | ***************************************
[2025-11-25 19:41:31] 2025-11-25 18:40:29,415 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:41:31] 2025-11-25 18:40:29,415 | INFO     | ***************************************
[2025-11-25 19:41:31] 2025-11-25 18:40:29,415 | INFO     | 
[2025-11-25 19:41:31] 2025-11-25 18:40:29,430 | INFO     | architecture information:
[2025-11-25 19:41:31] 2025-11-25 18:40:29,430 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:41:31] 2025-11-25 18:40:29,436 | INFO     | cat /etc/os-release:
[2025-11-25 19:41:31] NAME="CentOS Linux"
[2025-11-25 19:41:31] VERSION="7 (Core)"
[2025-11-25 19:41:31] ID="centos"
[2025-11-25 19:41:31] ID_LIKE="rhel fedora"
[2025-11-25 19:41:31] VERSION_ID="7"
[2025-11-25 19:41:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:41:31] ANSI_COLOR="0;31"
[2025-11-25 19:41:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:41:31] HOME_URL="https://www.centos.org/"
[2025-11-25 19:41:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:41:31] 
[2025-11-25 19:41:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:41:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:41:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:41:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:41:31] 
[2025-11-25 19:41:31] 2025-11-25 18:40:29,437 | INFO     | ***************************************
[2025-11-25 19:41:31] 2025-11-25 18:40:29,939 | INFO     | executing command: df -mP /tmp/job_10924385/atlas/pilot/slots/0
[2025-11-25 19:41:31] 2025-11-25 18:40:29,946 | INFO     | sufficient remaining disk space (217818595328 B)
[2025-11-25 19:41:31] 2025-11-25 18:40:29,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:41:31] 2025-11-25 18:40:29,946 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:41:31] 2025-11-25 18:40:29,946 | INFO     | update_server=False
[2025-11-25 19:41:31] 2025-11-25 18:40:29,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:41:31] 2025-11-25 18:40:29,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:41:31] 2025-11-25 18:40:30,028 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 19:41:31] 2025-11-25 18:40:30,028 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 19:41:31] 2025-11-25 18:40:30,028 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:41:31] 2025-11-25 18:40:30,028 | INFO     | will abort loop
[2025-11-25 19:41:31] 2025-11-25 18:40:30,330 | INFO     | all job control threads have been joined
[2025-11-25 19:41:31] 2025-11-25 18:40:30,628 | INFO     | all data control threads have been joined
[2025-11-25 19:41:31] 2025-11-25 18:40:30,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:41:31] 2025-11-25 18:40:30,952 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:30,952 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:31,009 | INFO     | all payload control threads have been joined
[2025-11-25 19:41:31] 2025-11-25 18:40:31,033 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:31,061 | INFO     | [job] validate thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:31,149 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:31,199 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:31,335 | INFO     | [job] control thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:31,339 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:31,598 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:31,603 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:31,633 | INFO     | [data] control thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:32,014 | INFO     | [payload] control thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:32,384 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:41:31] 2025-11-25 18:40:32,519 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:32,738 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:36,390 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:40,740 | INFO     | job.realtimelogging is not enabled
[2025-11-25 19:41:31] 2025-11-25 18:40:41,745 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:41:31] 2025-11-25 18:40:59,913 | INFO     | PID=805 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-25 19:41:31] 2025-11-25 18:40:59,913 | INFO     | .. there are 11 such processes running
[2025-11-25 19:41:31] 2025-11-25 18:40:59,913 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:41:31] 2025-11-25 18:40:59,914 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:41:31] 2025-11-25 18:40:59,914 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:41:31] 2025-11-25 18:41:25,355 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:41:31] 2025-11-25 18:41:26,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-11-25 19:41:31] 2025-11-25 18:41:27,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:41:31] 2025-11-25 18:41:27,075 | INFO     | [monitor] control thread has ended
[2025-11-25 19:41:31] 2025-11-25 18:41:31,679 | INFO     | all workflow threads have been joined
[2025-11-25 19:41:31] 2025-11-25 18:41:31,679 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:41:31] 2025-11-25 18:41:31,679 | INFO     | traces error code: 0
[2025-11-25 19:41:31] 2025-11-25 18:41:31,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:41:31] 2025-11-25 18:41:31,736 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:41:31] 2025-11-25 18:41:31,737 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:41:31] 2025-11-25 18:41:31,738 [wrapper] pilotpid: 805
[2025-11-25 19:41:31] 2025-11-25 18:41:31,738 [wrapper] Pilot exit status: 0
[2025-11-25 19:41:31] 2025-11-25 18:41:31,743 [wrapper] pandaids: 6894053171
[2025-11-25 19:41:31] 2025-11-25 18:41:31,773 [wrapper] cleanup supervisor_pilot  2666 806
[2025-11-25 19:41:31] 2025-11-25 18:41:31,774 [wrapper] Test setup, not cleaning
[2025-11-25 19:41:31] 2025-11-25 18:41:31,775 [wrapper] apfmon messages muted
[2025-11-25 19:41:31] 2025-11-25 18:41:31,776 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:41:31] 2025-11-25 18:41:31,777 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:41:31]  *** Error codes and diagnostics ***
[2025-11-25 19:41:31]     "exeErrorCode": 0,
[2025-11-25 19:41:31]     "exeErrorDiag": "",
[2025-11-25 19:41:31]     "pilotErrorCode": 0,
[2025-11-25 19:41:31]     "pilotErrorDiag": "",
[2025-11-25 19:41:31]  *** Listing of results directory ***
[2025-11-25 19:41:31] total 601412
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user    576529 Nov 24 00:11 pilot3.tar.gz
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user      5112 Nov 24 00:17 queuedata.json
[2025-11-25 19:41:31] -rwx------ 1 mf493845 unix-user     36292 Nov 24 00:18 runpilot2-wrapper.sh
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user       100 Nov 25 15:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:41:31] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 25 15:39 run_atlas
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user       105 Nov 25 15:39 job.xml
[2025-11-25 19:41:31] -rw-r--r-- 2 mf493845 unix-user 308463861 Nov 25 16:58 EVNT.47523616._000005.pool.root.1
[2025-11-25 19:41:31] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 25 16:58 start_atlas.sh
[2025-11-25 19:41:31] drwxrwx--x 2 mf493845 unix-user       100 Nov 25 16:58 shared
[2025-11-25 19:41:31] -rw-r--r-- 2 mf493845 unix-user    589953 Nov 25 16:58 input.tar.gz
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user      6391 Nov 25 16:58 init_data.xml
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user         0 Nov 25 16:58 boinc_setup_complete
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user      8192 Nov 25 16:58 boinc_mmap_file
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user         0 Nov 25 16:58 boinc_lockfile
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user      2612 Nov 25 16:58 pandaJob.out
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user    991909 Nov 25 16:58 agis_schedconf.cvmfs.json
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user   1516240 Nov 25 16:58 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:41:31] drwx------ 5 mf493845 unix-user       440 Nov 25 16:58 pilot3
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user 300024980 Nov 25 19:39 HITS.47523618._000117.pool.root.1
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user      1019 Nov 25 19:40 memory_monitor_summary.json
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user    341527 Nov 25 19:40 log.47523618._000117.job.log.tgz.1
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user      7761 Nov 25 19:40 heartbeat.json
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user        95 Nov 25 19:40 pilot_heartbeat.json
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user      5092 Nov 25 19:41 pilotlog.txt
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user   1392991 Nov 25 19:41 log.47523618._000117.job.log.1
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user       357 Nov 25 19:41 output.list
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user       620 Nov 25 19:41 runtime_log
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user   1751040 Nov 25 19:41 result.tar.gz
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user       647 Nov 25 19:41 y2DODmfWYh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLpIKDmSOmdfm.diag
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user      9220 Nov 25 19:41 runtime_log.err
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user     21539 Nov 25 19:41 stderr.txt
[2025-11-25 19:41:31] HITS file was successfully produced:
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user 300024980 Nov 25 19:39 shared/HITS.pool.root.1
[2025-11-25 19:41:31]  *** Contents of shared directory: ***
[2025-11-25 19:41:31] total 596540
[2025-11-25 19:41:31] -rw-r--r-- 2 mf493845 unix-user 308463861 Nov 25 16:58 ATLAS.root_0
[2025-11-25 19:41:31] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 25 16:58 start_atlas.sh
[2025-11-25 19:41:31] -rw-r--r-- 2 mf493845 unix-user    589953 Nov 25 16:58 input.tar.gz
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user 300024980 Nov 25 19:39 HITS.pool.root.1
[2025-11-25 19:41:31] -rw------- 1 mf493845 unix-user   1751040 Nov 25 19:41 result.tar.gz
19:41:33 (29292): run_atlas exited; CPU time 35354.959083
19:41:33 (29292): called boinc_finish(0)

</stderr_txt>
]]>

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