Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:04:49 (326895): wrapper (7.7.26015): starting
12:04:49 (326895): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 12:04:49] Arguments: --nthreads 3
[2025-11-25 12:04:49] Threads: 3
[2025-11-25 12:04:49] Checking for CVMFS
[2025-11-25 12:04:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:04:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:04:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:04:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:04:49] 2.9.2.0 4187037 79 62124 153279 0 88 35151026 36864001 0 130560 0 1001720 99.998 4047 18736 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 12:04:49] CVMFS is ok
[2025-11-25 12:04:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:04:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:04:49] Further information can be found at the LHC@home message board.
[2025-11-25 12:04:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:04:49] Checking for apptainer binary...
[2025-11-25 12:04:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:04:49] Running /usr/bin/apptainer --version
[2025-11-25 12:04:49] apptainer version 1.4.1-1.1
[2025-11-25 12:04:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:04:49] thA335
[2025-11-25 12:04:49] apptainer works
[2025-11-25 12:04:49] Set ATHENA_PROC_NUMBER=3
[2025-11-25 12:04:49] Set ATHENA_CORE_NUMBER=3
[2025-11-25 12:04:49] Starting ATLAS job with PandaID=6895618822
[2025-11-25 12:04:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:09:07]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:09:07] 2025-11-25 11:08:15,496 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:09:07] 2025-11-25 11:08:15,496 | INFO     | update_server=False
[2025-11-25 12:09:07] 2025-11-25 11:08:15,496 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:09:07] 2025-11-25 11:08:15,496 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:09:07] 2025-11-25 11:08:15,920 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 12:09:07] 2025-11-25 11:08:15,920 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 12:09:07] 2025-11-25 11:08:15,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:09:07] 2025-11-25 11:08:15,922 | INFO     | will abort loop
[2025-11-25 12:09:07] 2025-11-25 11:08:16,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:09:07] 2025-11-25 11:08:16,123 | INFO     | all data control threads have been joined
[2025-11-25 12:09:07] 2025-11-25 11:08:16,473 | INFO     | all payload control threads have been joined
[2025-11-25 12:09:07] 2025-11-25 11:08:16,502 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:16,503 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:16,928 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,015 | INFO     | all job control threads have been joined
[2025-11-25 12:09:07] 2025-11-25 11:08:17,048 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,129 | INFO     | [data] control thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,266 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,418 | INFO     | [job] validate thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,479 | INFO     | [payload] control thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,505 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,516 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,555 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,778 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:17,996 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:18,021 | INFO     | [job] control thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:18,099 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:09:07] 2025-11-25 11:08:18,105 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:22,106 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:09:07] 2025-11-25 11:08:45,512 | INFO     | PID=330619 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 12:09:07] 2025-11-25 11:08:45,512 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:09:07] 2025-11-25 11:08:45,512 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:09:07] 2025-11-25 11:08:45,512 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:09:07] 2025-11-25 11:09:00,747 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:09:07] 2025-11-25 11:09:01,980 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107236599616)>', '<ExcThread(monitor, started 140106497242880)>']
[2025-11-25 12:09:07] 2025-11-25 11:09:02,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:09:07] 2025-11-25 11:09:02,597 | INFO     | [monitor] control thread has ended
[2025-11-25 12:09:07] 2025-11-25 11:09:07,006 | INFO     | all workflow threads have been joined
[2025-11-25 12:09:07] 2025-11-25 11:09:07,007 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:09:07] 2025-11-25 11:09:07,007 | INFO     | traces error code: 0
[2025-11-25 12:09:07] 2025-11-25 11:09:07,008 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:09:07] 2025-11-25 11:09:07,052 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:09:07] 2025-11-25 11:09:07,056 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:09:07] 2025-11-25 11:09:07,059 [wrapper] pilotpid: 330619
[2025-11-25 12:09:07] 2025-11-25 11:09:07,062 [wrapper] Pilot exit status: 0
[2025-11-25 12:09:07] 2025-11-25 11:09:07,069 [wrapper] pandaids: 6895618822
[2025-11-25 12:09:07] 2025-11-25 11:09:07,086 [wrapper] cleanup supervisor_pilot  330625 330620
[2025-11-25 12:09:07] 2025-11-25 11:09:07,088 [wrapper] Test setup, not cleaning
[2025-11-25 12:09:07] 2025-11-25 11:09:07,091 [wrapper] apfmon messages muted
[2025-11-25 12:09:07] 2025-11-25 11:09:07,093 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:09:07] 2025-11-25 11:09:07,096 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:09:07]  *** Error codes and diagnostics ***
[2025-11-25 12:09:07]     "exeErrorCode": 65,
[2025-11-25 12:09:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 12:09:07]     "pilotErrorCode": 1305,
[2025-11-25 12:09:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 12:09:07]  *** Listing of results directory ***
[2025-11-25 12:09:07] total 404372
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc    576529 Nov 24 12:12 pilot3.tar.gz
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc      5112 Nov 24 12:48 queuedata.json
[2025-11-25 12:09:07] -rwx------ 1 boinc boinc     36292 Nov 24 12:50 runpilot2-wrapper.sh
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc       100 Nov 25 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:09:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 12:04 run_atlas
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc       105 Nov 25 12:04 job.xml
[2025-11-25 12:09:07] -rw-r--r-- 2 boinc boinc 409877992 Nov 25 12:04 EVNT.47483658._001331.pool.root.1
[2025-11-25 12:09:07] -rw-r--r-- 2 boinc boinc    590103 Nov 25 12:04 input.tar.gz
[2025-11-25 12:09:07] -rw-r--r-- 2 boinc boinc     15847 Nov 25 12:04 start_atlas.sh
[2025-11-25 12:09:07] drwxrwx--x 2 boinc boinc      4096 Nov 25 12:04 shared
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc         0 Nov 25 12:04 boinc_setup_complete
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc      6196 Nov 25 12:04 init_data.xml
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc         0 Nov 25 12:04 boinc_lockfile
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc      2785 Nov 25 12:04 pandaJob.out
[2025-11-25 12:09:07] -rw------- 1 boinc boinc    991894 Nov 25 12:04 agis_schedconf.cvmfs.json
[2025-11-25 12:09:07] -rw------- 1 boinc boinc   1516240 Nov 25 12:05 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:09:07] drwx------ 5 boinc boinc      4096 Nov 25 12:05 pilot3
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc       522 Nov 25 12:05 boinc_task_state.xml
[2025-11-25 12:09:07] -rw------- 1 boinc boinc       947 Nov 25 12:06 memory_monitor_summary.json
[2025-11-25 12:09:07] -rw------- 1 boinc boinc     56316 Nov 25 12:06 log.47556149._003177.job.log.tgz.1
[2025-11-25 12:09:07] -rw------- 1 boinc boinc        95 Nov 25 12:08 pilot_heartbeat.json
[2025-11-25 12:09:07] -rw------- 1 boinc boinc      8414 Nov 25 12:08 heartbeat.json
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc      8192 Nov 25 12:08 boinc_mmap_file
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc        22 Nov 25 12:08 wrapper_checkpoint.txt
[2025-11-25 12:09:07] -rw------- 1 boinc boinc      4937 Nov 25 12:09 pilotlog.txt
[2025-11-25 12:09:07] -rw------- 1 boinc boinc     93604 Nov 25 12:09 log.47556149._003177.job.log.1
[2025-11-25 12:09:07] -rw------- 1 boinc boinc       186 Nov 25 12:09 output.list
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc       620 Nov 25 12:09 runtime_log
[2025-11-25 12:09:07] -rw------- 1 boinc boinc    174080 Nov 25 12:09 result.tar.gz
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc      8744 Nov 25 12:09 runtime_log.err
[2025-11-25 12:09:07] -rw------- 1 boinc boinc       649 Nov 25 12:09 PPlLDmZGkh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOfLKDmiReVYn.diag
[2025-11-25 12:09:07] -rw-r--r-- 1 boinc boinc      8117 Nov 25 12:09 stderr.txt
[2025-11-25 12:09:07] No HITS result produced
[2025-11-25 12:09:07]  *** Contents of shared directory: ***
[2025-11-25 12:09:07] total 401044
[2025-11-25 12:09:07] -rw-r--r-- 2 boinc boinc 409877992 Nov 25 12:04 ATLAS.root_0
[2025-11-25 12:09:07] -rw-r--r-- 2 boinc boinc    590103 Nov 25 12:04 input.tar.gz
[2025-11-25 12:09:07] -rw-r--r-- 2 boinc boinc     15847 Nov 25 12:04 start_atlas.sh
[2025-11-25 12:09:07] -rw------- 1 boinc boinc    174080 Nov 25 12:09 result.tar.gz
12:09:09 (326895): run_atlas exited; CPU time 31.814577
12:09:09 (326895): called boinc_finish(0)

</stderr_txt>
]]>

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