Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:26:28 (1699932): wrapper (7.7.26015): starting
05:26:28 (1699932): wrapper: running run_atlas (--nthreads 6)
[2025-11-26 05:26:28] Arguments: --nthreads 6
[2025-11-26 05:26:28] Threads: 6
[2025-11-26 05:26:28] Checking for CVMFS
[2025-11-26 05:26:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 05:26:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 05:26:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 05:26:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 05:26:29] 2.13.3.0 1560231 651 60496 153296 1 81 18687687 20971521 715 130560 0 488274 99.986 29176 18 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-26 05:26:29] CVMFS is ok
[2025-11-26 05:26:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 05:26:29] Checking for apptainer binary...
[2025-11-26 05:26:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 05:26:29] Running /usr/bin/apptainer --version
[2025-11-26 05:26:29] apptainer version 1.4.4-1.el9
[2025-11-26 05:26:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 05:26:29] testio005
[2025-11-26 05:26:29] apptainer works
[2025-11-26 05:26:29] Set ATHENA_PROC_NUMBER=6
[2025-11-26 05:26:29] Set ATHENA_CORE_NUMBER=6
[2025-11-26 05:26:29] Starting ATLAS job with PandaID=6895617863
[2025-11-26 05:26:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:39:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:39:55] 2025-11-26 07:38:53,151 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:39:55] 2025-11-26 07:38:53,151 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:39:55] 2025-11-26 07:38:53,161 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:39:55] 2025-11-26 07:38:53,162 | INFO     | sum of square deviations: 89147563522.94565
[2025-11-26 16:39:55] 2025-11-26 07:38:53,171 | INFO     | sum of deviations: 646766164594.7284
[2025-11-26 16:39:55] 2025-11-26 07:38:53,171 | INFO     | mean x: 1764122525.509091
[2025-11-26 16:39:55] 2025-11-26 07:38:53,171 | INFO     | mean y: 2682907.2954545454
[2025-11-26 16:39:55] 2025-11-26 07:38:53,171 | INFO     | intersect: -12796037715.113993
[2025-11-26 16:39:55] 2025-11-26 07:38:53,172 | INFO     | chi2: 9.907322504354989
[2025-11-26 16:39:55] 2025-11-26 07:38:53,173 | INFO     | sum of square deviations: 87136792767.94502
[2025-11-26 16:39:55] 2025-11-26 07:38:53,181 | INFO     | sum of deviations: 845493718185.4913
[2025-11-26 16:39:55] 2025-11-26 07:38:53,182 | INFO     | mean x: 1764122373.0091603
[2025-11-26 16:39:55] 2025-11-26 07:38:53,182 | INFO     | mean y: 2697975.4183206107
[2025-11-26 16:39:55] 2025-11-26 07:38:53,182 | INFO     | intersect: -17114691098.81468
[2025-11-26 16:39:55] 2025-11-26 07:38:53,183 | INFO     | chi2: 6.941313540097381
[2025-11-26 16:39:55] 2025-11-26 07:38:53,183 | INFO     | current chi2=6.941313540097381 (change=29.93754329642374 %)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,183 | INFO     | sum of square deviations: 85156487700.4447
[2025-11-26 16:39:55] 2025-11-26 07:38:53,192 | INFO     | sum of deviations: 986972321422.5526
[2025-11-26 16:39:55] 2025-11-26 07:38:53,192 | INFO     | mean x: 1764122220.5092309
[2025-11-26 16:39:55] 2025-11-26 07:38:53,193 | INFO     | mean y: 2708853.3246153845
[2025-11-26 16:39:55] 2025-11-26 07:38:53,193 | INFO     | intersect: -20443646442.280315
[2025-11-26 16:39:55] 2025-11-26 07:38:53,193 | INFO     | chi2: 5.142007359717246
[2025-11-26 16:39:55] 2025-11-26 07:38:53,193 | INFO     | current chi2=5.142007359717246 (change=25.92169579988304 %)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,194 | INFO     | sum of square deviations: 83206415757.94418
[2025-11-26 16:39:55] 2025-11-26 07:38:53,203 | INFO     | sum of deviations: 1031728374045.6271
[2025-11-26 16:39:55] 2025-11-26 07:38:53,203 | INFO     | mean x: 1764122068.0093024
[2025-11-26 16:39:55] 2025-11-26 07:38:53,203 | INFO     | mean y: 2712338.395348837
[2025-11-26 16:39:55] 2025-11-26 07:38:53,203 | INFO     | intersect: -21871740205.505657
[2025-11-26 16:39:55] 2025-11-26 07:38:53,204 | INFO     | chi2: 4.7523797578324425
[2025-11-26 16:39:55] 2025-11-26 07:38:53,204 | INFO     | current chi2=4.7523797578324425 (change=7.577344305983812 %)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,204 | INFO     | right removable region: 644
[2025-11-26 16:39:55] 2025-11-26 07:38:53,205 | INFO     | sum of square deviations: 87136789107.94502
[2025-11-26 16:39:55] 2025-11-26 07:38:53,214 | INFO     | sum of deviations: 447395141618.9028
[2025-11-26 16:39:55] 2025-11-26 07:38:53,214 | INFO     | mean x: 1764122678.0091603
[2025-11-26 16:39:55] 2025-11-26 07:38:53,214 | INFO     | mean y: 2698018.349618321
[2025-11-26 16:39:55] 2025-11-26 07:38:53,214 | INFO     | intersect: -9055013694.934782
[2025-11-26 16:39:55] 2025-11-26 07:38:53,215 | INFO     | chi2: 7.159622799592388
[2025-11-26 16:39:55] 2025-11-26 07:38:53,215 | INFO     | current chi2=7.159622799592388 (change=27.734029083587288 %)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,216 | INFO     | sum of square deviations: 85156480380.44472
[2025-11-26 16:39:55] 2025-11-26 07:38:53,224 | INFO     | sum of deviations: 292532272453.8358
[2025-11-26 16:39:55] 2025-11-26 07:38:53,224 | INFO     | mean x: 1764122830.5092309
[2025-11-26 16:39:55] 2025-11-26 07:38:53,225 | INFO     | mean y: 2709939.610769231
[2025-11-26 16:39:55] 2025-11-26 07:38:53,225 | INFO     | intersect: -6057461384.885009
[2025-11-26 16:39:55] 2025-11-26 07:38:53,225 | INFO     | chi2: 5.617436521468006
[2025-11-26 16:39:55] 2025-11-26 07:38:53,225 | INFO     | current chi2=5.617436521468006 (change=21.540049263659274 %)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,226 | INFO     | left removable region: 20
[2025-11-26 16:39:55] 2025-11-26 07:38:53,226 | INFO     | sum of square deviations: 75340996213.94232
[2025-11-26 16:39:55] 2025-11-26 07:38:53,234 | INFO     | sum of deviations: 583900493358.7406
[2025-11-26 16:39:55] 2025-11-26 07:38:53,235 | INFO     | mean x: 1764122647.5096154
[2025-11-26 16:39:55] 2025-11-26 07:38:53,235 | INFO     | mean y: 2748028.4599358975
[2025-11-26 16:39:55] 2025-11-26 07:38:53,235 | INFO     | intersect: -13669384488.890171
[2025-11-26 16:39:55] 2025-11-26 07:38:53,236 | INFO     | chi2: 0.10984983197725022
[2025-11-26 16:39:55] 2025-11-26 07:38:53,236 | INFO     | current memory leak: 7.75 B/s (using 624 data points, chi2=0.11)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,236 | INFO     | could have reported an average CPU frequency of 3289 MHz (25 samples)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | ..............................
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | . Timing measurements:
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | . get job = 0 s
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | . initial setup = 5 s
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | . payload setup = 5 s
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | . stage-in = 0 s
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | . payload execution = 40221 s
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | . stage-out = 6 s
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | . log creation = 0 s
[2025-11-26 16:39:55] 2025-11-26 07:38:53,237 | INFO     | ..............................
[2025-11-26 16:39:55] 2025-11-26 07:38:53,326 | INFO     | 
[2025-11-26 16:39:55] 2025-11-26 07:38:53,326 | INFO     | job summary report
[2025-11-26 16:39:55] 2025-11-26 07:38:53,326 | INFO     | --------------------------------------------------
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | PanDA job id: 6895617863
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | task id: 47556161
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | errors: (none)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | pilot state: finished 
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | transexitcode: 0
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | exeerrorcode: 0
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | exeerrordiag: 
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | exitcode: 0
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | exitmsg: OK
[2025-11-26 16:39:55] 2025-11-26 07:38:53,327 | INFO     | cpuconsumptiontime: 226198 s
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | nevents: 1000
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | neventsw: 0
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | pid: 1710465
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | pgrp: 1710465
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | corecount: 6
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | event service: False
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | sizes: {0: 2284312, 4: 2284574, 11: 2284602, 40230: 2327970, 40237: 2336964, 40239: 2337020, 40317: 2337458}
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | --------------------------------------------------
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | 
[2025-11-26 16:39:55] 2025-11-26 07:38:53,328 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-26 16:39:55] 2025-11-26 07:38:53,349 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,350 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,350 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,350 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,350 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,350 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,350 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,351 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:39:55] 2025-11-26 07:38:53,352 | INFO     | job 6895617863 has completed (purged errors)
[2025-11-26 16:39:55] 2025-11-26 07:38:53,352 | INFO     | overall cleanup function is called
[2025-11-26 16:39:55] 2025-11-26 07:38:54,369 | INFO     | --- collectZombieJob: --- 10, [1710465]
[2025-11-26 16:39:55] 2025-11-26 07:38:54,369 | INFO     | zombie collector waiting for pid 1710465
[2025-11-26 16:39:55] 2025-11-26 07:38:54,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:39:55] 2025-11-26 07:38:54,369 | INFO     | collected zombie processes
[2025-11-26 16:39:55] 2025-11-26 07:38:54,369 | INFO     | will attempt to kill all subprocesses of pid=1710465
[2025-11-26 16:39:55] 2025-11-26 07:38:54,477 | INFO     | process IDs to be killed: [1710465] (in reverse order)
[2025-11-26 16:39:55] 2025-11-26 07:38:54,523 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:39:55] 2025-11-26 07:38:54,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:39:55] 2025-11-26 07:38:54,527 | INFO     | did not find any defunct processes belonging to 1710465
[2025-11-26 16:39:55] 2025-11-26 07:38:54,530 | INFO     | did not find any defunct processes belonging to 1710465
[2025-11-26 16:39:55] 2025-11-26 07:38:54,532 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:39:55] 2025-11-26 07:38:54,532 | INFO     | ready for new job
[2025-11-26 16:39:55] 2025-11-26 07:38:54,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:39:55] 2025-11-26 07:38:54,535 | INFO     | ***************************************
[2025-11-26 16:39:55] 2025-11-26 07:38:54,535 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:39:55] 2025-11-26 07:38:54,535 | INFO     | ***************************************
[2025-11-26 16:39:55] 2025-11-26 07:38:54,535 | INFO     | 
[2025-11-26 16:39:55] 2025-11-26 07:38:54,536 | INFO     | architecture information:
[2025-11-26 16:39:55] 2025-11-26 07:38:54,537 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:39:55] 2025-11-26 07:38:54,552 | INFO     | cat /etc/os-release:
[2025-11-26 16:39:55] NAME="CentOS Linux"
[2025-11-26 16:39:55] VERSION="7 (Core)"
[2025-11-26 16:39:55] ID="centos"
[2025-11-26 16:39:55] ID_LIKE="rhel fedora"
[2025-11-26 16:39:55] VERSION_ID="7"
[2025-11-26 16:39:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:39:55] ANSI_COLOR="0;31"
[2025-11-26 16:39:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:39:55] HOME_URL="https://www.centos.org/"
[2025-11-26 16:39:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:39:55] 
[2025-11-26 16:39:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:39:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:39:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:39:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:39:55] 
[2025-11-26 16:39:55] 2025-11-26 07:38:54,552 | INFO     | ***************************************
[2025-11-26 16:39:55] 2025-11-26 07:38:55,055 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-26 16:39:55] 2025-11-26 07:38:55,070 | INFO     | sufficient remaining disk space (86347087872 B)
[2025-11-26 16:39:55] 2025-11-26 07:38:55,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:39:55] 2025-11-26 07:38:55,070 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:39:55] 2025-11-26 07:38:55,071 | INFO     | update_server=False
[2025-11-26 16:39:55] 2025-11-26 07:38:55,071 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:39:55] 2025-11-26 07:38:55,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:39:55] 2025-11-26 07:38:55,404 | INFO     | all payload control threads have been joined
[2025-11-26 16:39:55] 2025-11-26 07:38:55,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:39:55] 2025-11-26 07:38:55,532 | INFO     | aborting loop
[2025-11-26 16:39:55] 2025-11-26 07:38:55,832 | INFO     | all job control threads have been joined
[2025-11-26 16:39:55] 2025-11-26 07:38:55,859 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:39:55] 2025-11-26 07:38:55,966 | INFO     | all data control threads have been joined
[2025-11-26 16:39:55] 2025-11-26 07:38:56,076 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,076 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,404 | INFO     | [payload] control thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,492 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,537 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,691 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,718 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,735 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,817 | INFO     | [job] validate thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,839 | INFO     | [job] control thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:56,971 | INFO     | [data] control thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:57,011 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:57,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:39:55] 2025-11-26 07:38:57,383 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:57,637 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:38:57,864 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:39:01,251 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:39:55] 2025-11-26 07:39:26,150 | INFO     | PID=1703726 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:39:55] 2025-11-26 07:39:26,150 | INFO     | .. there are 2 such processes running
[2025-11-26 16:39:55] 2025-11-26 07:39:26,150 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:39:55] 2025-11-26 07:39:26,150 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:39:55] 2025-11-26 07:39:26,151 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:39:55] 2025-11-26 07:39:49,080 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:39:55] 2025-11-26 07:39:50,596 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139790057322304)>', '<ExcThread(monitor, started 139789416253184)>']
[2025-11-26 16:39:55] 2025-11-26 07:39:51,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:39:55] 2025-11-26 07:39:51,272 | INFO     | [monitor] control thread has ended
[2025-11-26 16:39:55] 2025-11-26 07:39:55,608 | INFO     | all workflow threads have been joined
[2025-11-26 16:39:55] 2025-11-26 07:39:55,608 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:39:55] 2025-11-26 07:39:55,608 | INFO     | traces error code: 0
[2025-11-26 16:39:55] 2025-11-26 07:39:55,609 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:39:55] 2025-11-26 07:39:55,717 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:39:55] 2025-11-26 07:39:55,720 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:39:55] 2025-11-26 07:39:55,722 [wrapper] pilotpid: 1703726
[2025-11-26 16:39:55] 2025-11-26 07:39:55,725 [wrapper] Pilot exit status: 0
[2025-11-26 16:39:55] 2025-11-26 07:39:55,734 [wrapper] pandaids: 6895617863
[2025-11-26 16:39:55] 2025-11-26 07:39:55,764 [wrapper] cleanup supervisor_pilot 1834010 1703727
[2025-11-26 16:39:55] 2025-11-26 07:39:55,766 [wrapper] Test setup, not cleaning
[2025-11-26 16:39:55] 2025-11-26 07:39:55,769 [wrapper] apfmon messages muted
[2025-11-26 16:39:55] 2025-11-26 07:39:55,771 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:39:55] 2025-11-26 07:39:55,774 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:39:55]  *** Error codes and diagnostics ***
[2025-11-26 16:39:55]     "exeErrorCode": 0,
[2025-11-26 16:39:55]     "exeErrorDiag": "",
[2025-11-26 16:39:55]     "pilotErrorCode": 0,
[2025-11-26 16:39:55]     "pilotErrorDiag": "",
[2025-11-26 16:39:55]  *** Listing of results directory ***
[2025-11-26 16:39:55] total 1331664
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc    598293 Nov  6 17:41 pilot3.tar.gz
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc      5112 Nov 24 20:21 queuedata.json
[2025-11-26 16:39:55] -rwx------. 1 boinc boinc     36292 Nov 24 20:22 runpilot2-wrapper.sh
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc       100 Nov 26 05:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:39:55] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 05:26 run_atlas
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc       105 Nov 26 05:26 job.xml
[2025-11-26 16:39:55] -rw-r--r--. 2 boinc boinc 412684672 Nov 26 05:26 EVNT.47483658._002037.pool.root.1
[2025-11-26 16:39:55] -rw-r--r--. 2 boinc boinc     15847 Nov 26 05:26 start_atlas.sh
[2025-11-26 16:39:55] drwxrwx--x. 2 boinc boinc        68 Nov 26 05:26 shared
[2025-11-26 16:39:55] -rw-r--r--. 2 boinc boinc    611280 Nov 26 05:26 input.tar.gz
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc         0 Nov 26 05:26 boinc_lockfile
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc      2784 Nov 26 05:26 pandaJob.out
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc    991893 Nov 26 05:26 agis_schedconf.cvmfs.json
[2025-11-26 16:39:55] drwx------. 7 boinc boinc      4096 Nov 26 05:26 pilot3
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc      9370 Nov 26 07:05 init_data.xml
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc       533 Nov 26 16:24 boinc_task_state.xml
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc 932405578 Nov 26 16:36 HITS.47556161._000205.pool.root.1
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc      1034 Nov 26 16:37 memory_monitor_summary.json
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc   1516240 Nov 26 16:37 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc   1686136 Nov 26 16:37 log.47556161._000205.job.log.tgz.1
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc        95 Nov 26 16:38 pilot_heartbeat.json
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc      8576 Nov 26 16:38 heartbeat.json
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc      8192 Nov 26 16:39 boinc_mmap_file
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc        29 Nov 26 16:39 wrapper_checkpoint.txt
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc      4823 Nov 26 16:39 pilotlog.txt
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc   5601846 Nov 26 16:39 log.47556161._000205.job.log.1
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc       353 Nov 26 16:39 output.list
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc       620 Nov 26 16:39 runtime_log
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc   7311360 Nov 26 16:39 result.tar.gz
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc      8776 Nov 26 16:39 runtime_log.err
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc       652 Nov 26 16:39 BT7KDmvpjh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQ2IKDmhvnVGm.diag
[2025-11-26 16:39:55] -rw-r--r--. 1 boinc boinc     20788 Nov 26 16:39 stderr.txt
[2025-11-26 16:39:55] HITS file was successfully produced:
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc 932405578 Nov 26 16:36 shared/HITS.pool.root.1
[2025-11-26 16:39:55]  *** Contents of shared directory: ***
[2025-11-26 16:39:55] total 1321328
[2025-11-26 16:39:55] -rw-r--r--. 2 boinc boinc 412684672 Nov 26 05:26 ATLAS.root_0
[2025-11-26 16:39:55] -rw-r--r--. 2 boinc boinc     15847 Nov 26 05:26 start_atlas.sh
[2025-11-26 16:39:55] -rw-r--r--. 2 boinc boinc    611280 Nov 26 05:26 input.tar.gz
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc 932405578 Nov 26 16:36 HITS.pool.root.1
[2025-11-26 16:39:55] -rw-------. 1 boinc boinc   7311360 Nov 26 16:39 result.tar.gz
16:39:57 (1699932): run_atlas exited; CPU time 226226.221059
16:39:57 (1699932): called boinc_finish(0)

</stderr_txt>
]]>

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