Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:09:05 (26682): wrapper (7.7.26015): starting
06:09:05 (26682): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 06:09:05] Arguments: --nthreads 8
[2025-11-25 06:09:05] Threads: 8
[2025-11-25 06:09:05] Checking for CVMFS
[2025-11-25 06:09:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 06:09:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 06:09:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 06:09:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 06:09:05] 2.11.2.0 11495 116181 131568 153279 1 90 10913420 18432000 1845 130560 0 82647564 99.974 4931637 25148 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 06:09:05] CVMFS is ok
[2025-11-25 06:09:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 06:09:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 06:09:05] Further information can be found at the LHC@home message board.
[2025-11-25 06:09:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 06:09:05] Checking for apptainer binary...
[2025-11-25 06:09:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 06:09:05] Running /usr/bin/apptainer --version
[2025-11-25 06:09:06] apptainer version 1.3.2-1.el7
[2025-11-25 06:09:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 06:09:08] c-206-31.aglt2.org
[2025-11-25 06:09:08] apptainer works
[2025-11-25 06:09:08] Set ATHENA_PROC_NUMBER=8
[2025-11-25 06:09:08] Set ATHENA_CORE_NUMBER=8
[2025-11-25 06:09:08] Starting ATLAS job with PandaID=6895618809
[2025-11-25 06:09:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:46:58 (13874): wrapper (7.7.26015): starting
15:46:58 (13874): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 15:46:58] Arguments: --nthreads 8
[2025-11-25 15:46:58] Threads: 8
[2025-11-25 15:46:58] This job has been restarted, cleaning up previous attempt
[2025-11-25 15:46:58] Checking for CVMFS
[2025-11-25 15:46:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:46:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:46:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:46:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:46:59] 2.11.2.0 11495 116759 129484 153297 3 49 11018733 18432000 1 130560 0 83103049 99.974 4957689 25179 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 15:46:59] CVMFS is ok
[2025-11-25 15:46:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:46:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:46:59] Further information can be found at the LHC@home message board.
[2025-11-25 15:46:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:46:59] Checking for apptainer binary...
[2025-11-25 15:46:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:46:59] Running /usr/bin/apptainer --version
[2025-11-25 15:46:59] apptainer version 1.3.2-1.el7
[2025-11-25 15:46:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:47:00] c-206-31.aglt2.org
[2025-11-25 15:47:00] apptainer works
[2025-11-25 15:47:00] Set ATHENA_PROC_NUMBER=8
[2025-11-25 15:47:00] Set ATHENA_CORE_NUMBER=8
[2025-11-25 15:47:00] Starting ATLAS job with PandaID=6895618809
[2025-11-25 15:47:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:20:24]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:20:24] 2025-11-26 16:19:48,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:20:24] 2025-11-26 16:19:48,978 | INFO     | time since job start (70353s) is within the limit (172800.0s)
[2025-11-26 11:20:24] 2025-11-26 16:19:50,987 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 11:20:24] 2025-11-26 16:19:50,990 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2394.75
[2025-11-26 11:20:24] 2025-11-26 16:19:50,993 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895618809/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:20:24] 2025-11-26 16:19:50,994 | INFO     | extracted standard info from prmon json
[2025-11-26 11:20:24] 2025-11-26 16:19:50,994 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:20:24] 2025-11-26 16:19:50,994 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:20:24] 2025-11-26 16:19:51,009 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:20:24] 2025-11-26 16:19:51,009 | INFO     | time since job start (70356s) is within the limit (172800.0s)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,011 | INFO     | sum of square deviations: 475298674344.4438
[2025-11-26 11:20:24] 2025-11-26 16:19:51,053 | INFO     | sum of deviations: 2376987232152.097
[2025-11-26 11:20:24] 2025-11-26 16:19:51,054 | INFO     | mean x: 1764138799.6660886
[2025-11-26 11:20:24] 2025-11-26 16:19:51,054 | INFO     | mean y: 2862518.1431049434
[2025-11-26 11:20:24] 2025-11-26 16:19:51,054 | INFO     | intersect: -8819664513.589272
[2025-11-26 11:20:24] 2025-11-26 16:19:51,056 | INFO     | chi2: 5.185000363838732
[2025-11-26 11:20:24] 2025-11-26 16:19:51,057 | INFO     | sum of square deviations: 469142272217.21576
[2025-11-26 11:20:24] 2025-11-26 16:19:51,087 | INFO     | sum of deviations: 2694058138280.8525
[2025-11-26 11:20:24] 2025-11-26 16:19:51,087 | INFO     | mean x: 1764138647.1689897
[2025-11-26 11:20:24] 2025-11-26 16:19:51,087 | INFO     | mean y: 2870367.681184669
[2025-11-26 11:20:24] 2025-11-26 16:19:51,087 | INFO     | intersect: -10127728303.377953
[2025-11-26 11:20:24] 2025-11-26 16:19:51,088 | INFO     | chi2: 2.836286346817962
[2025-11-26 11:20:24] 2025-11-26 16:19:51,088 | INFO     | current chi2=2.836286346817962 (change=45.298242086947354 %)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,089 | INFO     | sum of square deviations: 463039266439.9675
[2025-11-26 11:20:24] 2025-11-26 16:19:51,112 | INFO     | sum of deviations: 2818764854094.47
[2025-11-26 11:20:24] 2025-11-26 16:19:51,113 | INFO     | mean x: 1764138494.671916
[2025-11-26 11:20:24] 2025-11-26 16:19:51,113 | INFO     | mean y: 2873481.0332458443
[2025-11-26 11:20:24] 2025-11-26 16:19:51,113 | INFO     | intersect: -10736370351.932323
[2025-11-26 11:20:24] 2025-11-26 16:19:51,114 | INFO     | chi2: 2.3472352553955473
[2025-11-26 11:20:24] 2025-11-26 16:19:51,114 | INFO     | current chi2=2.3472352553955473 (change=17.242655769615176 %)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,114 | INFO     | right removable region: 1142
[2025-11-26 11:20:24] 2025-11-26 16:19:51,115 | INFO     | sum of square deviations: 469141803737.2158
[2025-11-26 11:20:24] 2025-11-26 16:19:51,139 | INFO     | sum of deviations: 2094863436245.2502
[2025-11-26 11:20:24] 2025-11-26 16:19:51,139 | INFO     | mean x: 1764138952.1689897
[2025-11-26 11:20:24] 2025-11-26 16:19:51,139 | INFO     | mean y: 2869496.905923345
[2025-11-26 11:20:24] 2025-11-26 16:19:51,139 | INFO     | intersect: -7874557238.284122
[2025-11-26 11:20:24] 2025-11-26 16:19:51,140 | INFO     | chi2: 3.226023505407598
[2025-11-26 11:20:24] 2025-11-26 16:19:51,140 | INFO     | current chi2=3.226023505407598 (change=37.78161467631603 %)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,141 | INFO     | sum of square deviations: 463038539442.9922
[2025-11-26 11:20:24] 2025-11-26 16:19:51,166 | INFO     | sum of deviations: 2003590877316.5186
[2025-11-26 11:20:24] 2025-11-26 16:19:51,166 | INFO     | mean x: 1764139104.6692913
[2025-11-26 11:20:24] 2025-11-26 16:19:51,166 | INFO     | mean y: 2871777.1601049867
[2025-11-26 11:20:24] 2025-11-26 16:19:51,166 | INFO     | intersect: -7630646203.1891165
[2025-11-26 11:20:24] 2025-11-26 16:19:51,167 | INFO     | chi2: 3.140477373713682
[2025-11-26 11:20:24] 2025-11-26 16:19:51,168 | INFO     | current chi2=3.140477373713682 (change=2.651751654956018 %)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,168 | INFO     | left removable region: 20
[2025-11-26 11:20:24] 2025-11-26 16:19:51,169 | INFO     | sum of square deviations: 437983232021.0585
[2025-11-26 11:20:24] 2025-11-26 16:19:51,191 | INFO     | sum of deviations: 2308570993172.941
[2025-11-26 11:20:24] 2025-11-26 16:19:51,191 | INFO     | mean x: 1764139074.1764705
[2025-11-26 11:20:24] 2025-11-26 16:19:51,191 | INFO     | mean y: 2886504.67201426
[2025-11-26 11:20:24] 2025-11-26 16:19:51,191 | INFO     | intersect: -9295734987.693594
[2025-11-26 11:20:24] 2025-11-26 16:19:51,192 | INFO     | chi2: 0.22468690762513274
[2025-11-26 11:20:24] 2025-11-26 16:19:51,192 | INFO     | current memory leak: 5.27 B/s (using 1122 data points, chi2=0.22)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,193 | INFO     | could have reported an average CPU frequency of 2563 MHz (42 samples)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,193 | INFO     | ..............................
[2025-11-26 11:20:24] 2025-11-26 16:19:51,193 | INFO     | . Timing measurements:
[2025-11-26 11:20:24] 2025-11-26 16:19:51,193 | INFO     | . get job = 0 s
[2025-11-26 11:20:24] 2025-11-26 16:19:51,194 | INFO     | . initial setup = 2 s
[2025-11-26 11:20:24] 2025-11-26 16:19:51,194 | INFO     | . payload setup = 7 s
[2025-11-26 11:20:24] 2025-11-26 16:19:51,194 | INFO     | . stage-in = 0 s
[2025-11-26 11:20:24] 2025-11-26 16:19:51,194 | INFO     | . payload execution = 70320 s
[2025-11-26 11:20:24] 2025-11-26 16:19:51,194 | INFO     | . stage-out = 4 s
[2025-11-26 11:20:24] 2025-11-26 16:19:51,194 | INFO     | . log creation = 0 s
[2025-11-26 11:20:24] 2025-11-26 16:19:51,194 | INFO     | ..............................
[2025-11-26 11:20:24] 2025-11-26 16:19:51,307 | INFO     | 
[2025-11-26 11:20:24] 2025-11-26 16:19:51,308 | INFO     | job summary report
[2025-11-26 11:20:24] 2025-11-26 16:19:51,308 | INFO     | --------------------------------------------------
[2025-11-26 11:20:24] 2025-11-26 16:19:51,308 | INFO     | PanDA job id: 6895618809
[2025-11-26 11:20:24] 2025-11-26 16:19:51,308 | INFO     | task id: 47556161
[2025-11-26 11:20:24] 2025-11-26 16:19:51,308 | INFO     | errors: (none)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,308 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:20:24] 2025-11-26 16:19:51,309 | INFO     | pilot state: finished 
[2025-11-26 11:20:24] 2025-11-26 16:19:51,309 | INFO     | transexitcode: 0
[2025-11-26 11:20:24] 2025-11-26 16:19:51,309 | INFO     | exeerrorcode: 0
[2025-11-26 11:20:24] 2025-11-26 16:19:51,309 | INFO     | exeerrordiag: 
[2025-11-26 11:20:24] 2025-11-26 16:19:51,309 | INFO     | exitcode: 0
[2025-11-26 11:20:24] 2025-11-26 16:19:51,310 | INFO     | exitmsg: OK
[2025-11-26 11:20:24] 2025-11-26 16:19:51,310 | INFO     | cpuconsumptiontime: 544998 s
[2025-11-26 11:20:24] 2025-11-26 16:19:51,310 | INFO     | nevents: 1000
[2025-11-26 11:20:24] 2025-11-26 16:19:51,310 | INFO     | neventsw: 0
[2025-11-26 11:20:24] 2025-11-26 16:19:51,310 | INFO     | pid: 12634
[2025-11-26 11:20:24] 2025-11-26 16:19:51,310 | INFO     | pgrp: 12634
[2025-11-26 11:20:24] 2025-11-26 16:19:51,311 | INFO     | corecount: 8
[2025-11-26 11:20:24] 2025-11-26 16:19:51,311 | INFO     | event service: False
[2025-11-26 11:20:24] 2025-11-26 16:19:51,311 | INFO     | sizes: {0: 2284262, 5: 2284524, 11: 2284580, 70331: 2341181, 70337: 2350231, 70340: 2350421}
[2025-11-26 11:20:24] 2025-11-26 16:19:51,311 | INFO     | --------------------------------------------------
[2025-11-26 11:20:24] 2025-11-26 16:19:51,311 | INFO     | 
[2025-11-26 11:20:24] 2025-11-26 16:19:51,312 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 11:20:24] 2025-11-26 16:19:51,331 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,333 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:20:24] 2025-11-26 16:19:51,333 | INFO     | job 6895618809 has completed (purged errors)
[2025-11-26 11:20:24] 2025-11-26 16:19:51,333 | INFO     | overall cleanup function is called
[2025-11-26 11:20:24] 2025-11-26 16:19:52,346 | INFO     | --- collectZombieJob: --- 10, [12634]
[2025-11-26 11:20:24] 2025-11-26 16:19:52,346 | INFO     | zombie collector waiting for pid 12634
[2025-11-26 11:20:24] 2025-11-26 16:19:52,346 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:20:24] 2025-11-26 16:19:52,346 | INFO     | collected zombie processes
[2025-11-26 11:20:24] 2025-11-26 16:19:52,346 | INFO     | will attempt to kill all subprocesses of pid=12634
[2025-11-26 11:20:24] 2025-11-26 16:19:52,511 | INFO     | process IDs to be killed: [12634] (in reverse order)
[2025-11-26 11:20:24] 2025-11-26 16:19:52,561 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:20:24] 2025-11-26 16:19:52,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:20:24] 2025-11-26 16:19:52,564 | INFO     | did not find any defunct processes belonging to 12634
[2025-11-26 11:20:24] 2025-11-26 16:19:52,566 | INFO     | did not find any defunct processes belonging to 12634
[2025-11-26 11:20:24] 2025-11-26 16:19:52,567 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:20:24] 2025-11-26 16:19:52,567 | INFO     | ready for new job
[2025-11-26 11:20:24] 2025-11-26 16:19:52,567 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:20:24] 2025-11-26 16:19:52,571 | INFO     | ***************************************
[2025-11-26 11:20:24] 2025-11-26 16:19:52,571 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:20:24] 2025-11-26 16:19:52,571 | INFO     | ***************************************
[2025-11-26 11:20:24] 2025-11-26 16:19:52,571 | INFO     | 
[2025-11-26 11:20:24] 2025-11-26 16:19:52,572 | INFO     | architecture information:
[2025-11-26 11:20:24] 2025-11-26 16:19:52,574 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:20:24] 2025-11-26 16:19:52,584 | INFO     | cat /etc/os-release:
[2025-11-26 11:20:24] NAME="CentOS Linux"
[2025-11-26 11:20:24] VERSION="7 (Core)"
[2025-11-26 11:20:24] ID="centos"
[2025-11-26 11:20:24] ID_LIKE="rhel fedora"
[2025-11-26 11:20:24] VERSION_ID="7"
[2025-11-26 11:20:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:20:24] ANSI_COLOR="0;31"
[2025-11-26 11:20:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:20:24] HOME_URL="https://www.centos.org/"
[2025-11-26 11:20:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:20:24] 
[2025-11-26 11:20:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:20:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:20:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:20:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:20:24] 
[2025-11-26 11:20:24] 2025-11-26 16:19:52,584 | INFO     | ***************************************
[2025-11-26 11:20:24] 2025-11-26 16:19:53,087 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 11:20:24] 2025-11-26 16:19:53,108 | INFO     | sufficient remaining disk space (26578255872 B)
[2025-11-26 11:20:24] 2025-11-26 16:19:53,108 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:20:24] 2025-11-26 16:19:53,108 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:20:24] 2025-11-26 16:19:53,108 | INFO     | update_server=False
[2025-11-26 11:20:24] 2025-11-26 16:19:53,109 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:20:24] 2025-11-26 16:19:53,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:20:24] 2025-11-26 16:19:53,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:20:24] 2025-11-26 16:19:53,110 | INFO     | aborting loop
[2025-11-26 11:20:24] 2025-11-26 16:19:53,109 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:20:24] 2025-11-26 16:19:53,231 | INFO     | all data control threads have been joined
[2025-11-26 11:20:24] 2025-11-26 16:19:53,408 | INFO     | all job control threads have been joined
[2025-11-26 11:20:24] 2025-11-26 16:19:53,456 | INFO     | all payload control threads have been joined
[2025-11-26 11:20:24] 2025-11-26 16:19:53,591 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:20:24] 2025-11-26 16:19:54,111 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,114 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,115 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,236 | INFO     | [data] control thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,307 | INFO     | [job] validate thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,339 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,413 | INFO     | [job] control thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,461 | INFO     | [payload] control thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,493 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,757 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,861 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:54,871 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:55,115 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:55,224 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:55,416 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:19:57,597 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:20:24] 2025-11-26 16:20:11,992 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:20:24] 2025-11-26 16:20:13,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140018265335616)>', '<ExcThread(monitor, started 140017611568896)>']
[2025-11-26 11:20:24] 2025-11-26 16:20:18,470 | INFO     | all workflow threads have been joined
[2025-11-26 11:20:24] 2025-11-26 16:20:18,470 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:20:24] 2025-11-26 16:20:18,471 | INFO     | traces error code: 0
[2025-11-26 11:20:24] 2025-11-26 16:20:18,471 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:20:24] 2025-11-26 16:20:24,259 | INFO     | PID=25352 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 11:20:24] 2025-11-26 16:20:24,259 | INFO     | .. there are 3 such processes running
[2025-11-26 11:20:24] 2025-11-26 16:20:24,260 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:20:24] 2025-11-26 16:20:24,260 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:20:24] 2025-11-26 16:20:24,260 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:20:24] 2025-11-26 16:20:24,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:20:24] 2025-11-26 16:20:24,261 | INFO     | [monitor] control thread has ended
[2025-11-26 11:20:24] 2025-11-26 16:20:24,389 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:20:24] 2025-11-26 16:20:24,392 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:20:24] 2025-11-26 16:20:24,394 [wrapper] pilotpid: 25352
[2025-11-26 11:20:24] 2025-11-26 16:20:24,396 [wrapper] Pilot exit status: 0
[2025-11-26 11:20:24] 2025-11-26 16:20:24,404 [wrapper] pandaids: 6895618809 6895618809
[2025-11-26 11:20:24] 2025-11-26 16:20:24,446 [wrapper] cleanup supervisor_pilot  5251 25353
[2025-11-26 11:20:24] 2025-11-26 16:20:24,449 [wrapper] Test setup, not cleaning
[2025-11-26 11:20:24] 2025-11-26 16:20:24,451 [wrapper] apfmon messages muted
[2025-11-26 11:20:24] 2025-11-26 16:20:24,454 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:20:24] 2025-11-26 16:20:24,456 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:20:24]  *** Error codes and diagnostics ***
[2025-11-26 11:20:24]     "exeErrorCode": 0,
[2025-11-26 11:20:24]     "exeErrorDiag": "",
[2025-11-26 11:20:24]     "pilotErrorCode": 0,
[2025-11-26 11:20:24]     "pilotErrorDiag": "",
[2025-11-26 11:20:24]  *** Listing of results directory ***
[2025-11-26 11:20:24] total 1721308
[2025-11-26 11:20:24] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 06:12 pilot3.tar.gz
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 06:41 queuedata.json
[2025-11-26 11:20:24] -rwx------ 1 boincer umatlas     36292 Nov 24 06:45 runpilot2-wrapper.sh
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas       100 Nov 25 06:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:20:24] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 06:08 run_atlas
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas       105 Nov 25 06:08 job.xml
[2025-11-26 11:20:24] -rw-r--r-- 3 boincer umatlas 409533540 Nov 25 06:09 EVNT.47483658._002041.pool.root.1
[2025-11-26 11:20:24] -rw-r--r-- 3 boincer umatlas 409533540 Nov 25 06:09 ATLAS.root_0
[2025-11-26 11:20:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 06:09 start_atlas.sh
[2025-11-26 11:20:24] drwxrwx--x 2 boincer umatlas      4096 Nov 25 06:09 shared
[2025-11-26 11:20:24] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 06:09 input.tar.gz
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas         0 Nov 25 06:09 boinc_lockfile
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas      2784 Nov 25 15:47 pandaJob.out
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas        57 Nov 25 15:47 setup.sh.local
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas    991893 Nov 25 15:47 agis_schedconf.cvmfs.json
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas       534 Nov 26 11:08 boinc_task_state.xml
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas      5955 Nov 26 11:18 init_data.xml
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas 915550979 Nov 26 11:19 HITS.47556161._000247.pool.root.1
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas      1067 Nov 26 11:19 memory_monitor_summary.json
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas   1516240 Nov 26 11:19 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas   2307982 Nov 26 11:19 log.47556161._000247.job.log.tgz.1
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas      8650 Nov 26 11:19 heartbeat.json
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas        30 Nov 26 11:20 wrapper_checkpoint.txt
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 11:20 boinc_mmap_file
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas        96 Nov 26 11:20 pilot_heartbeat.json
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas       820 Nov 26 11:20 pilotlog.txt
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas   9733017 Nov 26 11:20 log.47556161._000247.job.log.1
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas       353 Nov 26 11:20 output.list
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas       620 Nov 26 11:20 runtime_log
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas  12062720 Nov 26 11:20 result.tar.gz
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas      9428 Nov 26 11:20 runtime_log.err
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas       793 Nov 26 11:20 kUKODmfBkh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmy2IKDmR3Sg1m.diag
[2025-11-26 11:20:24] -rw-r--r-- 1 boincer umatlas     23425 Nov 26 11:20 stderr.txt
[2025-11-26 11:20:24] HITS file was successfully produced:
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas 915550979 Nov 26 11:19 shared/HITS.pool.root.1
[2025-11-26 11:20:24]  *** Contents of shared directory: ***
[2025-11-26 11:20:24] total 1306412
[2025-11-26 11:20:24] -rw-r--r-- 3 boincer umatlas 409533540 Nov 25 06:09 ATLAS.root_0
[2025-11-26 11:20:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 06:09 start_atlas.sh
[2025-11-26 11:20:24] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 06:09 input.tar.gz
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas 915550979 Nov 26 11:19 HITS.pool.root.1
[2025-11-26 11:20:24] -rw------- 1 boincer umatlas  12062720 Nov 26 11:20 result.tar.gz
11:20:26 (13874): run_atlas exited; CPU time 544013.315240
11:20:26 (13874): called boinc_finish(0)

</stderr_txt>
]]>

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