Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:27:23 (1308): wrapper (7.7.26015): starting
08:27:23 (1308): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 08:27:23] Arguments: --nthreads 8
[2025-11-27 08:27:23] Threads: 8
[2025-11-27 08:27:23] Checking for CVMFS
[2025-11-27 08:27:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:27:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:27:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:27:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:27:25] 2.11.2.0 32329 286459 144712 153352 0 60 21470686 25165824 1288 130560 11 140991928 99.884 84363358 2862 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 08:27:25] CVMFS is ok
[2025-11-27 08:27:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:27:25] Checking for apptainer binary...
[2025-11-27 08:27:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:27:25] Running /usr/bin/apptainer --version
[2025-11-27 08:27:25] apptainer version 1.3.2-1.el7
[2025-11-27 08:27:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:27:46] cg-vwn362.simple-grid.lan
[2025-11-27 08:27:46] apptainer works
[2025-11-27 08:27:46] Set ATHENA_PROC_NUMBER=8
[2025-11-27 08:27:46] Set ATHENA_CORE_NUMBER=8
[2025-11-27 08:27:46] Starting ATLAS job with PandaID=6886166730
[2025-11-27 08:27:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:23:14]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:23:14] 2025-11-27 22:22:26,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:23:14] 2025-11-27 22:22:28,541 | INFO     | time since job start (53466s) is within the limit (172800.0s)
[2025-11-27 23:23:14] 2025-11-27 22:22:29,406 | INFO     | monitor loop #3699: job 0:6886166730 is in state 'finished'
[2025-11-27 23:23:14] 2025-11-27 22:22:29,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:23:14] 2025-11-27 22:22:30,548 | INFO     | time since job start (53468s) is within the limit (172800.0s)
[2025-11-27 23:23:14] 2025-11-27 22:22:31,915 | INFO     | monitor loop #3700: job 0:6886166730 is in state 'finished'
[2025-11-27 23:23:14] 2025-11-27 22:22:31,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:23:14] 2025-11-27 22:22:32,555 | INFO     | time since job start (53470s) is within the limit (172800.0s)
[2025-11-27 23:23:14] 2025-11-27 22:22:34,424 | INFO     | monitor loop #3701: job 0:6886166730 is in state 'finished'
[2025-11-27 23:23:14] 2025-11-27 22:22:34,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:23:14] 2025-11-27 22:22:34,562 | INFO     | time since job start (53472s) is within the limit (172800.0s)
[2025-11-27 23:23:14] 2025-11-27 22:22:35,734 | INFO     | PID=5085 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:23:14] 2025-11-27 22:22:35,734 | INFO     | .. there are 9 such processes running
[2025-11-27 23:23:14] 2025-11-27 22:22:36,738 | INFO     | time since job start (53474s) is within the limit (172800.0s)
[2025-11-27 23:23:14] 2025-11-27 22:22:36,935 | INFO     | monitor loop #3702: job 0:6886166730 is in state 'finished'
[2025-11-27 23:23:14] 2025-11-27 22:22:36,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:23:14] 2025-11-27 22:22:37,198 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:23:14] 2025-11-27 22:22:37,200 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:23:14] 2025-11-27 22:22:37,203 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6886166730/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:23:14] 2025-11-27 22:22:37,204 | INFO     | extracted standard info from prmon json
[2025-11-27 23:23:14] 2025-11-27 22:22:37,204 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:23:14] 2025-11-27 22:22:37,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:23:14] 2025-11-27 22:22:37,220 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:23:14] 2025-11-27 22:22:37,221 | INFO     | sum of square deviations: 199995188174.0
[2025-11-27 23:23:14] 2025-11-27 22:22:37,250 | INFO     | sum of deviations: 2301127751971.001
[2025-11-27 23:23:14] 2025-11-27 22:22:37,250 | INFO     | mean x: 1764255690.5
[2025-11-27 23:23:14] 2025-11-27 22:22:37,250 | INFO     | mean y: 3201711.8194444445
[2025-11-27 23:23:14] 2025-11-27 22:22:37,250 | INFO     | intersect: -20296175328.44324
[2025-11-27 23:23:14] 2025-11-27 22:22:37,251 | INFO     | chi2: 29.39128163129953
[2025-11-27 23:23:14] 2025-11-27 22:22:37,253 | INFO     | sum of square deviations: 196543368358.9708
[2025-11-27 23:23:14] 2025-11-27 22:22:37,280 | INFO     | sum of deviations: 2645552389260.754
[2025-11-27 23:23:14] 2025-11-27 22:22:37,281 | INFO     | mean x: 1764255538.0058208
[2025-11-27 23:23:14] 2025-11-27 22:22:37,281 | INFO     | mean y: 3216931.648428405
[2025-11-27 23:23:14] 2025-11-27 22:22:37,281 | INFO     | intersect: -23744368615.543
[2025-11-27 23:23:14] 2025-11-27 22:22:37,282 | INFO     | chi2: 25.90853030954797
[2025-11-27 23:23:14] 2025-11-27 22:22:37,282 | INFO     | current chi2=25.90853030954797 (change=11.849606850906051 %)
[2025-11-27 23:23:14] 2025-11-27 22:22:37,282 | INFO     | right removable region: 858
[2025-11-27 23:23:14] 2025-11-27 22:22:37,284 | INFO     | sum of square deviations: 196542841318.97098
[2025-11-27 23:23:14] 2025-11-27 22:22:37,307 | INFO     | sum of deviations: 1879821321770.1292
[2025-11-27 23:23:14] 2025-11-27 22:22:37,307 | INFO     | mean x: 1764255843.0058208
[2025-11-27 23:23:14] 2025-11-27 22:22:37,308 | INFO     | mean y: 3220322.9743888243
[2025-11-27 23:23:14] 2025-11-27 22:22:37,308 | INFO     | intersect: -16870890830.010948
[2025-11-27 23:23:14] 2025-11-27 22:22:37,309 | INFO     | chi2: 23.921833456714793
[2025-11-27 23:23:14] 2025-11-27 22:22:37,309 | INFO     | current chi2=23.921833456714793 (change=18.609083616007347 %)
[2025-11-27 23:23:14] 2025-11-27 22:22:37,309 | INFO     | left removable region: 10
[2025-11-27 23:23:14] 2025-11-27 22:22:37,310 | INFO     | sum of square deviations: 189088622153.69788
[2025-11-27 23:23:14] 2025-11-27 22:22:37,337 | INFO     | sum of deviations: 1898852579139.2656
[2025-11-27 23:23:14] 2025-11-27 22:22:37,337 | INFO     | mean x: 1764255812.518868
[2025-11-27 23:23:14] 2025-11-27 22:22:37,337 | INFO     | mean y: 3257883.1084905663
[2025-11-27 23:23:14] 2025-11-27 22:22:37,337 | INFO     | intersect: -17713628842.840813
[2025-11-27 23:23:14] 2025-11-27 22:22:37,338 | INFO     | chi2: 14.419411881360144
[2025-11-27 23:23:14] 2025-11-27 22:22:37,339 | INFO     | current memory leak: 10.04 B/s (using 848 data points, chi2=14.42)
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | could have reported an average CPU frequency of 1999 MHz (31 samples)
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | ..............................
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | . Timing measurements:
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | . get job = 0 s
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | . initial setup = 3 s
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | . payload setup = 326 s
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | . stage-in = 0 s
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | . payload execution = 52856 s
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | . stage-out = 4 s
[2025-11-27 23:23:14] 2025-11-27 22:22:37,340 | INFO     | . log creation = 1 s
[2025-11-27 23:23:14] 2025-11-27 22:22:37,341 | INFO     | ..............................
[2025-11-27 23:23:14] 2025-11-27 22:22:37,593 | INFO     | 
[2025-11-27 23:23:14] 2025-11-27 22:22:37,593 | INFO     | job summary report
[2025-11-27 23:23:14] 2025-11-27 22:22:37,593 | INFO     | --------------------------------------------------
[2025-11-27 23:23:14] 2025-11-27 22:22:37,593 | INFO     | PanDA job id: 6886166730
[2025-11-27 23:23:14] 2025-11-27 22:22:37,593 | INFO     | task id: 47450870
[2025-11-27 23:23:14] 2025-11-27 22:22:37,593 | INFO     | errors: (none)
[2025-11-27 23:23:14] 2025-11-27 22:22:37,593 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:23:14] 2025-11-27 22:22:37,593 | INFO     | pilot state: finished 
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | transexitcode: 0
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | exeerrorcode: 0
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | exeerrordiag: 
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | exitcode: 0
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | exitmsg: OK
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | cpuconsumptiontime: 195343 s
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | nevents: 1000
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | neventsw: 0
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | pid: 12406
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | pgrp: 12406
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | corecount: 8
[2025-11-27 23:23:14] 2025-11-27 22:22:37,594 | INFO     | event service: False
[2025-11-27 23:23:14] 2025-11-27 22:22:37,595 | INFO     | sizes: {0: 2284338, 1: 2284537, 12: 2284537, 23: 2284565, 33: 2284593, 44: 2284649, 55: 2284805, 66: 2284833, 76: 2284861, 87: 2284917, 93: 2285207, 98: 2285515, 5
[2025-11-27 23:23:14] 2025-11-27 22:22:37,595 | INFO     | --------------------------------------------------
[2025-11-27 23:23:14] 2025-11-27 22:22:37,595 | INFO     | 
[2025-11-27 23:23:14] 2025-11-27 22:22:37,595 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-27 23:23:14] 2025-11-27 22:22:38,048 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,048 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,048 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,050 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,050 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:23:14] 2025-11-27 22:22:38,050 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,050 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:23:14] 2025-11-27 22:22:38,050 | INFO     | job 6886166730 has completed (purged errors)
[2025-11-27 23:23:14] 2025-11-27 22:22:38,050 | INFO     | overall cleanup function is called
[2025-11-27 23:23:14] 2025-11-27 22:22:39,074 | INFO     | --- collectZombieJob: --- 10, [12406]
[2025-11-27 23:23:14] 2025-11-27 22:22:39,074 | INFO     | zombie collector waiting for pid 12406
[2025-11-27 23:23:14] 2025-11-27 22:22:39,074 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:23:14] 2025-11-27 22:22:39,074 | INFO     | collected zombie processes
[2025-11-27 23:23:14] 2025-11-27 22:22:39,074 | INFO     | will attempt to kill all subprocesses of pid=12406
[2025-11-27 23:23:14] 2025-11-27 22:22:39,194 | INFO     | process IDs to be killed: [12406] (in reverse order)
[2025-11-27 23:23:14] 2025-11-27 22:22:39,970 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:23:14] 2025-11-27 22:22:39,971 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:23:14] 2025-11-27 22:22:39,974 | INFO     | did not find any defunct processes belonging to 12406
[2025-11-27 23:23:14] 2025-11-27 22:22:39,977 | INFO     | did not find any defunct processes belonging to 12406
[2025-11-27 23:23:14] 2025-11-27 22:22:40,022 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:23:14] 2025-11-27 22:22:40,022 | INFO     | ready for new job
[2025-11-27 23:23:14] 2025-11-27 22:22:40,022 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:23:14] 2025-11-27 22:22:40,026 | INFO     | ***************************************
[2025-11-27 23:23:14] 2025-11-27 22:22:40,026 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:23:14] 2025-11-27 22:22:40,026 | INFO     | ***************************************
[2025-11-27 23:23:14] 2025-11-27 22:22:40,026 | INFO     | 
[2025-11-27 23:23:14] 2025-11-27 22:22:40,027 | INFO     | pilot is running in a VM
[2025-11-27 23:23:14] 2025-11-27 22:22:40,027 | INFO     | architecture information:
[2025-11-27 23:23:14] 2025-11-27 22:22:40,042 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:23:14] 2025-11-27 22:22:40,387 | INFO     | cat /etc/os-release:
[2025-11-27 23:23:14] NAME="CentOS Linux"
[2025-11-27 23:23:14] VERSION="7 (Core)"
[2025-11-27 23:23:14] ID="centos"
[2025-11-27 23:23:14] ID_LIKE="rhel fedora"
[2025-11-27 23:23:14] VERSION_ID="7"
[2025-11-27 23:23:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:23:14] ANSI_COLOR="0;31"
[2025-11-27 23:23:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:23:14] HOME_URL="https://www.centos.org/"
[2025-11-27 23:23:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:23:14] 
[2025-11-27 23:23:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:23:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:23:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:23:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:23:14] 
[2025-11-27 23:23:14] 2025-11-27 22:22:40,387 | INFO     | ***************************************
[2025-11-27 23:23:14] 2025-11-27 22:22:40,891 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-27 23:23:14] 2025-11-27 22:22:41,161 | INFO     | sufficient remaining disk space (495615737856 B)
[2025-11-27 23:23:14] 2025-11-27 22:22:41,162 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:23:14] 2025-11-27 22:22:41,162 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:23:14] 2025-11-27 22:22:41,162 | INFO     | update_server=False
[2025-11-27 23:23:14] 2025-11-27 22:22:41,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:23:14] 2025-11-27 22:22:41,165 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:23:14] 2025-11-27 22:22:41,165 | INFO     | aborting loop
[2025-11-27 23:23:14] 2025-11-27 22:22:41,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:23:14] 2025-11-27 22:22:41,699 | INFO     | all payload control threads have been joined
[2025-11-27 23:23:14] 2025-11-27 22:22:41,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:23:14] 2025-11-27 22:22:42,092 | INFO     | all data control threads have been joined
[2025-11-27 23:23:14] 2025-11-27 22:22:42,168 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:42,171 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:42,281 | INFO     | all job control threads have been joined
[2025-11-27 23:23:14] 2025-11-27 22:22:42,285 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:42,467 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:23:14] 2025-11-27 22:22:42,705 | INFO     | [payload] control thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:42,715 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:42,849 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:42,947 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:43,041 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:43,101 | INFO     | [data] control thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:43,250 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:43,287 | INFO     | [job] control thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:43,293 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:43,301 | INFO     | [job] validate thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:43,473 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:43,537 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:45,999 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:23:14] 2025-11-27 22:22:55,261 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:23:14] 2025-11-27 22:22:56,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031536711488)>', '<ExcThread(monitor, started 140030966232832)>']
[2025-11-27 23:23:14] 2025-11-27 22:23:01,077 | INFO     | all workflow threads have been joined
[2025-11-27 23:23:14] 2025-11-27 22:23:01,077 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:23:14] 2025-11-27 22:23:01,077 | INFO     | traces error code: 0
[2025-11-27 23:23:14] 2025-11-27 22:23:01,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:23:14] 2025-11-27 22:23:09,924 | INFO     | PID=5085 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:23:14] 2025-11-27 22:23:09,924 | INFO     | .. there are 9 such processes running
[2025-11-27 23:23:14] 2025-11-27 22:23:09,925 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:23:14] 2025-11-27 22:23:09,925 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:23:14] 2025-11-27 22:23:09,925 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:23:14] 2025-11-27 22:23:09,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:23:14] 2025-11-27 22:23:09,925 | INFO     | [monitor] control thread has ended
[2025-11-27 23:23:14] 2025-11-27 22:23:10,370 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:23:14] 2025-11-27 22:23:10,407 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:23:14] 2025-11-27 22:23:10,496 [wrapper] pilotpid: 5085
[2025-11-27 23:23:14] 2025-11-27 22:23:10,599 [wrapper] Pilot exit status: 0
[2025-11-27 23:23:14] 2025-11-27 22:23:11,040 [wrapper] pandaids: 6886166730
[2025-11-27 23:23:14] 2025-11-27 22:23:12,027 [wrapper] cleanup supervisor_pilot  3233 5086
[2025-11-27 23:23:14] 2025-11-27 22:23:12,114 [wrapper] Test setup, not cleaning
[2025-11-27 23:23:14] 2025-11-27 22:23:12,211 [wrapper] apfmon messages muted
[2025-11-27 23:23:14] 2025-11-27 22:23:12,317 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:23:14] 2025-11-27 22:23:12,435 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:23:14]  *** Error codes and diagnostics ***
[2025-11-27 23:23:14]     "exeErrorCode": 0,
[2025-11-27 23:23:14]     "exeErrorDiag": "",
[2025-11-27 23:23:14]     "pilotErrorCode": 0,
[2025-11-27 23:23:14]     "pilotErrorDiag": "",
[2025-11-27 23:23:14]  *** Listing of results directory ***
[2025-11-27 23:23:14] total 935828
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc    576529 Nov 23 15:16 pilot3.tar.gz
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc      5112 Nov 23 15:38 queuedata.json
[2025-11-27 23:23:14] -rwx------. 1 boinc boinc     36292 Nov 23 15:40 runpilot2-wrapper.sh
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc       100 Nov 27 08:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:23:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 08:27 run_atlas
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc       105 Nov 27 08:27 job.xml
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc      6392 Nov 27 08:27 init_data.xml
[2025-11-27 23:23:14] -rw-r--r--. 2 boinc boinc 379514924 Nov 27 08:27 EVNT.14545720._000106.pool.root.1
[2025-11-27 23:23:14] -rw-r--r--. 2 boinc boinc     15847 Nov 27 08:27 start_atlas.sh
[2025-11-27 23:23:14] drwxrwx--x. 2 boinc boinc        68 Nov 27 08:27 shared
[2025-11-27 23:23:14] -rw-r--r--. 2 boinc boinc    590121 Nov 27 08:27 input.tar.gz
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc         0 Nov 27 08:27 boinc_lockfile
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc      2928 Nov 27 08:27 pandaJob.out
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc    991570 Nov 27 08:31 agis_schedconf.cvmfs.json
[2025-11-27 23:23:14] drwx------. 5 boinc boinc      4096 Nov 27 08:31 pilot3
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:05 boinc_task_state.xml
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc 556189803 Nov 27 23:19 HITS.47450870._000952.pool.root.1
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc      1038 Nov 27 23:20 memory_monitor_summary.json
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc   1516240 Nov 27 23:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc   2162856 Nov 27 23:21 log.47450870._000952.job.log.tgz.1
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc     28349 Nov 27 23:22 heartbeat.json
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:22 boinc_mmap_file
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:22 wrapper_checkpoint.txt
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc       819 Nov 27 23:23 pilotlog.txt
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc        95 Nov 27 23:23 pilot_heartbeat.json
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc   7156583 Nov 27 23:23 log.47450870._000952.job.log.1
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc       353 Nov 27 23:23 output.list
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:23 runtime_log
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc   9359360 Nov 27 23:23 result.tar.gz
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc      8817 Nov 27 23:23 runtime_log.err
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc       661 Nov 27 23:23 iMVNDmkRQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4ZIKDmtfslqn.diag
[2025-11-27 23:23:14] -rw-r--r--. 1 boinc boinc     21511 Nov 27 23:23 stderr.txt
[2025-11-27 23:23:14] HITS file was successfully produced:
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc 556189803 Nov 27 23:19 shared/HITS.pool.root.1
[2025-11-27 23:23:14]  *** Contents of shared directory: ***
[2025-11-27 23:23:14] total 923516
[2025-11-27 23:23:14] -rw-r--r--. 2 boinc boinc 379514924 Nov 27 08:27 ATLAS.root_0
[2025-11-27 23:23:14] -rw-r--r--. 2 boinc boinc     15847 Nov 27 08:27 start_atlas.sh
[2025-11-27 23:23:14] -rw-r--r--. 2 boinc boinc    590121 Nov 27 08:27 input.tar.gz
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc 556189803 Nov 27 23:19 HITS.pool.root.1
[2025-11-27 23:23:14] -rw-------. 1 boinc boinc   9359360 Nov 27 23:23 result.tar.gz
23:23:16 (1308): run_atlas exited; CPU time 195594.429572
23:23:16 (1308): called boinc_finish(0)

</stderr_txt>
]]>

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