Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:05:57 (16714): wrapper (7.7.26015): starting
05:05:57 (16714): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 05:05:57] Arguments: --nthreads 12
[2025-11-25 05:05:57] Threads: 12
[2025-11-25 05:05:57] Checking for CVMFS
[2025-11-25 05:05:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:05:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:05:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:05:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:05:57] 2.11.2.0 30551 116040 93804 153277 3 82 16339128 20275200 1 130560 0 51554036 99.916 6334016 28852 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 05:05:57] CVMFS is ok
[2025-11-25 05:05:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:05:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:05:57] Further information can be found at the LHC@home message board.
[2025-11-25 05:05:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:05:57] Checking for apptainer binary...
[2025-11-25 05:05:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:05:57] Running /usr/bin/apptainer --version
[2025-11-25 05:05:57] apptainer version 1.3.2-1.el7
[2025-11-25 05:05:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:05:59] c-205-16.aglt2.org
[2025-11-25 05:05:59] apptainer works
[2025-11-25 05:05:59] Set ATHENA_PROC_NUMBER=12
[2025-11-25 05:05:59] Set ATHENA_CORE_NUMBER=12
[2025-11-25 05:05:59] Starting ATLAS job with PandaID=6895617841
[2025-11-25 05:05:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:23:03]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:23:03] 2025-11-25 17:22:20,597 | INFO     | time since job start (26166s) is within the limit (172800.0s)
[2025-11-25 12:23:03] 2025-11-25 17:22:21,640 | INFO     | monitor loop #1962: job 0:6895617841 is in state 'finished'
[2025-11-25 12:23:03] 2025-11-25 17:22:21,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:23:03] 2025-11-25 17:22:22,603 | INFO     | time since job start (26168s) is within the limit (172800.0s)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,191 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 12:23:03] 2025-11-25 17:22:23,194 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.3333333333333
[2025-11-25 12:23:03] 2025-11-25 17:22:23,197 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895617841/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,198 | INFO     | extracted standard info from prmon json
[2025-11-25 12:23:03] 2025-11-25 17:22:23,198 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:23:03] 2025-11-25 17:22:23,198 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:23:03] 2025-11-25 17:22:23,206 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:23:03] 2025-11-25 17:22:23,207 | INFO     | sum of square deviations: 24482207089.4035
[2025-11-25 12:23:03] 2025-11-25 17:22:23,211 | INFO     | sum of deviations: 376361104183.16504
[2025-11-25 12:23:03] 2025-11-25 17:22:23,211 | INFO     | mean x: 1764078258.2191143
[2025-11-25 12:23:03] 2025-11-25 17:22:23,211 | INFO     | mean y: 3409131.5407925406
[2025-11-25 12:23:03] 2025-11-25 17:22:23,211 | INFO     | intersect: -27115487408.4785
[2025-11-25 12:23:03] 2025-11-25 17:22:23,212 | INFO     | chi2: 6.436598286852394
[2025-11-25 12:23:03] 2025-11-25 17:22:23,212 | INFO     | sum of square deviations: 23636154779.160374
[2025-11-25 12:23:03] 2025-11-25 17:22:23,216 | INFO     | sum of deviations: 547868989638.15546
[2025-11-25 12:23:03] 2025-11-25 17:22:23,216 | INFO     | mean x: 1764078105.721698
[2025-11-25 12:23:03] 2025-11-25 17:22:23,216 | INFO     | mean y: 3440016.9504716983
[2025-11-25 12:23:03] 2025-11-25 17:22:23,216 | INFO     | intersect: -40886615851.04848
[2025-11-25 12:23:03] 2025-11-25 17:22:23,217 | INFO     | chi2: 3.129658865156144
[2025-11-25 12:23:03] 2025-11-25 17:22:23,217 | INFO     | current chi2=3.129658865156144 (change=51.37712925865069 %)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,217 | INFO     | sum of square deviations: 22809823768.911545
[2025-11-25 12:23:03] 2025-11-25 17:22:23,221 | INFO     | sum of deviations: 619074188974.9642
[2025-11-25 12:23:03] 2025-11-25 17:22:23,221 | INFO     | mean x: 1764077953.2243438
[2025-11-25 12:23:03] 2025-11-25 17:22:23,221 | INFO     | mean y: 3453132.415274463
[2025-11-25 12:23:03] 2025-11-25 17:22:23,222 | INFO     | intersect: -47874826824.72483
[2025-11-25 12:23:03] 2025-11-25 17:22:23,222 | INFO     | chi2: 2.3836738466323433
[2025-11-25 12:23:03] 2025-11-25 17:22:23,222 | INFO     | current chi2=2.3836738466323433 (change=23.835985027926753 %)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,222 | INFO     | right removable region: 418
[2025-11-25 12:23:03] 2025-11-25 17:22:23,223 | INFO     | sum of square deviations: 23636149410.0378
[2025-11-25 12:23:03] 2025-11-25 17:22:23,227 | INFO     | sum of deviations: 242140703878.58487
[2025-11-25 12:23:03] 2025-11-25 17:22:23,227 | INFO     | mean x: 1764078410.7169812
[2025-11-25 12:23:03] 2025-11-25 17:22:23,227 | INFO     | mean y: 3433244.488207547
[2025-11-25 12:23:03] 2025-11-25 17:22:23,227 | INFO     | intersect: -18068680815.114952
[2025-11-25 12:23:03] 2025-11-25 17:22:23,227 | INFO     | chi2: 4.271229289791428
[2025-11-25 12:23:03] 2025-11-25 17:22:23,227 | INFO     | current chi2=4.271229289791428 (change=33.641512186398515 %)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,228 | INFO     | sum of square deviations: 22809761669.799572
[2025-11-25 12:23:03] 2025-11-25 17:22:23,232 | INFO     | sum of deviations: 202077427538.5985
[2025-11-25 12:23:03] 2025-11-25 17:22:23,232 | INFO     | mean x: 1764078563.2195704
[2025-11-25 12:23:03] 2025-11-25 17:22:23,232 | INFO     | mean y: 3440630.4391408116
[2025-11-25 12:23:03] 2025-11-25 17:22:23,232 | INFO     | intersect: -15624975974.342075
[2025-11-25 12:23:03] 2025-11-25 17:22:23,233 | INFO     | chi2: 4.179605864568158
[2025-11-25 12:23:03] 2025-11-25 17:22:23,233 | INFO     | current chi2=4.179605864568158 (change=2.1451301020588454 %)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,233 | INFO     | left removable region: 20
[2025-11-25 12:23:03] 2025-11-25 17:22:23,233 | INFO     | sum of square deviations: 19549189332.69342
[2025-11-25 12:23:03] 2025-11-25 17:22:23,237 | INFO     | sum of deviations: 387570429606.1059
[2025-11-25 12:23:03] 2025-11-25 17:22:23,237 | INFO     | mean x: 1764078532.7286432
[2025-11-25 12:23:03] 2025-11-25 17:22:23,237 | INFO     | mean y: 3497595.3065326633
[2025-11-25 12:23:03] 2025-11-25 17:22:23,237 | INFO     | intersect: -34970058758.007
[2025-11-25 12:23:03] 2025-11-25 17:22:23,237 | INFO     | chi2: 0.04628572816108286
[2025-11-25 12:23:03] 2025-11-25 17:22:23,238 | INFO     | current memory leak: 19.83 B/s (using 398 data points, chi2=0.05)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,238 | INFO     | could have reported an average CPU frequency of 2412 MHz (18 samples)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,238 | INFO     | ..............................
[2025-11-25 12:23:03] 2025-11-25 17:22:23,238 | INFO     | . Timing measurements:
[2025-11-25 12:23:03] 2025-11-25 17:22:23,238 | INFO     | . get job = 0 s
[2025-11-25 12:23:03] 2025-11-25 17:22:23,238 | INFO     | . initial setup = 2 s
[2025-11-25 12:23:03] 2025-11-25 17:22:23,239 | INFO     | . payload setup = 7 s
[2025-11-25 12:23:03] 2025-11-25 17:22:23,239 | INFO     | . stage-in = 0 s
[2025-11-25 12:23:03] 2025-11-25 17:22:23,239 | INFO     | . payload execution = 26128 s
[2025-11-25 12:23:03] 2025-11-25 17:22:23,239 | INFO     | . stage-out = 3 s
[2025-11-25 12:23:03] 2025-11-25 17:22:23,239 | INFO     | . log creation = 0 s
[2025-11-25 12:23:03] 2025-11-25 17:22:23,239 | INFO     | ..............................
[2025-11-25 12:23:03] 2025-11-25 17:22:23,322 | INFO     | 
[2025-11-25 12:23:03] 2025-11-25 17:22:23,322 | INFO     | job summary report
[2025-11-25 12:23:03] 2025-11-25 17:22:23,322 | INFO     | --------------------------------------------------
[2025-11-25 12:23:03] 2025-11-25 17:22:23,322 | INFO     | PanDA job id: 6895617841
[2025-11-25 12:23:03] 2025-11-25 17:22:23,323 | INFO     | task id: 47556149
[2025-11-25 12:23:03] 2025-11-25 17:22:23,323 | INFO     | errors: (none)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,323 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:23:03] 2025-11-25 17:22:23,323 | INFO     | pilot state: finished 
[2025-11-25 12:23:03] 2025-11-25 17:22:23,323 | INFO     | transexitcode: 0
[2025-11-25 12:23:03] 2025-11-25 17:22:23,323 | INFO     | exeerrorcode: 0
[2025-11-25 12:23:03] 2025-11-25 17:22:23,323 | INFO     | exeerrordiag: 
[2025-11-25 12:23:03] 2025-11-25 17:22:23,324 | INFO     | exitcode: 0
[2025-11-25 12:23:03] 2025-11-25 17:22:23,324 | INFO     | exitmsg: OK
[2025-11-25 12:23:03] 2025-11-25 17:22:23,324 | INFO     | cpuconsumptiontime: 298755 s
[2025-11-25 12:23:03] 2025-11-25 17:22:23,324 | INFO     | nevents: 1000
[2025-11-25 12:23:03] 2025-11-25 17:22:23,324 | INFO     | neventsw: 0
[2025-11-25 12:23:03] 2025-11-25 17:22:23,324 | INFO     | pid: 26914
[2025-11-25 12:23:03] 2025-11-25 17:22:23,325 | INFO     | pgrp: 26914
[2025-11-25 12:23:03] 2025-11-25 17:22:23,325 | INFO     | corecount: 12
[2025-11-25 12:23:03] 2025-11-25 17:22:23,325 | INFO     | event service: False
[2025-11-25 12:23:03] 2025-11-25 17:22:23,325 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 26139: 2322010, 26143: 2331004, 26146: 2331060, 26152: 2331434}
[2025-11-25 12:23:03] 2025-11-25 17:22:23,325 | INFO     | --------------------------------------------------
[2025-11-25 12:23:03] 2025-11-25 17:22:23,325 | INFO     | 
[2025-11-25 12:23:03] 2025-11-25 17:22:23,325 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 12:23:03] 2025-11-25 17:22:23,350 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,350 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,351 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,351 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,351 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,351 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,352 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:23:03] 2025-11-25 17:22:23,354 | INFO     | job 6895617841 has completed (purged errors)
[2025-11-25 12:23:03] 2025-11-25 17:22:23,354 | INFO     | overall cleanup function is called
[2025-11-25 12:23:03] 2025-11-25 17:22:24,371 | INFO     | --- collectZombieJob: --- 10, [26914]
[2025-11-25 12:23:03] 2025-11-25 17:22:24,371 | INFO     | zombie collector waiting for pid 26914
[2025-11-25 12:23:03] 2025-11-25 17:22:24,371 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:23:03] 2025-11-25 17:22:24,371 | INFO     | collected zombie processes
[2025-11-25 12:23:03] 2025-11-25 17:22:24,372 | INFO     | will attempt to kill all subprocesses of pid=26914
[2025-11-25 12:23:03] 2025-11-25 17:22:24,460 | INFO     | process IDs to be killed: [26914] (in reverse order)
[2025-11-25 12:23:03] 2025-11-25 17:22:24,510 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:23:03] 2025-11-25 17:22:24,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:23:03] 2025-11-25 17:22:24,514 | INFO     | did not find any defunct processes belonging to 26914
[2025-11-25 12:23:03] 2025-11-25 17:22:24,516 | INFO     | did not find any defunct processes belonging to 26914
[2025-11-25 12:23:03] 2025-11-25 17:22:24,518 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:23:03] 2025-11-25 17:22:24,518 | INFO     | ready for new job
[2025-11-25 12:23:03] 2025-11-25 17:22:24,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:23:03] 2025-11-25 17:22:24,520 | INFO     | ***************************************
[2025-11-25 12:23:03] 2025-11-25 17:22:24,520 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:23:03] 2025-11-25 17:22:24,521 | INFO     | ***************************************
[2025-11-25 12:23:03] 2025-11-25 17:22:24,521 | INFO     | 
[2025-11-25 12:23:03] 2025-11-25 17:22:24,521 | INFO     | architecture information:
[2025-11-25 12:23:03] 2025-11-25 17:22:24,522 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:23:03] 2025-11-25 17:22:24,537 | INFO     | cat /etc/os-release:
[2025-11-25 12:23:03] NAME="CentOS Linux"
[2025-11-25 12:23:03] VERSION="7 (Core)"
[2025-11-25 12:23:03] ID="centos"
[2025-11-25 12:23:03] ID_LIKE="rhel fedora"
[2025-11-25 12:23:03] VERSION_ID="7"
[2025-11-25 12:23:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:23:03] ANSI_COLOR="0;31"
[2025-11-25 12:23:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:23:03] HOME_URL="https://www.centos.org/"
[2025-11-25 12:23:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:23:03] 
[2025-11-25 12:23:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:23:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:23:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:23:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:23:03] 
[2025-11-25 12:23:03] 2025-11-25 17:22:24,538 | INFO     | ***************************************
[2025-11-25 12:23:03] 2025-11-25 17:22:25,041 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 12:23:03] 2025-11-25 17:22:25,057 | INFO     | sufficient remaining disk space (28375515136 B)
[2025-11-25 12:23:03] 2025-11-25 17:22:25,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:23:03] 2025-11-25 17:22:25,058 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:23:03] 2025-11-25 17:22:25,058 | INFO     | update_server=False
[2025-11-25 12:23:03] 2025-11-25 17:22:25,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:23:03] 2025-11-25 17:22:25,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:23:03] 2025-11-25 17:22:25,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:23:03] 2025-11-25 17:22:25,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:23:03] 2025-11-25 17:22:25,151 | INFO     | aborting loop
[2025-11-25 12:23:03] 2025-11-25 17:22:25,557 | INFO     | all job control threads have been joined
[2025-11-25 12:23:03] 2025-11-25 17:22:25,564 | INFO     | all data control threads have been joined
[2025-11-25 12:23:03] 2025-11-25 17:22:25,568 | INFO     | all payload control threads have been joined
[2025-11-25 12:23:03] 2025-11-25 17:22:26,064 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,064 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,078 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,158 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,263 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,296 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,560 | INFO     | [job] control thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,569 | INFO     | [data] control thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,573 | INFO     | [payload] control thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,587 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,860 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:26,949 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:27,064 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:27,182 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:23:03] 2025-11-25 17:22:27,353 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:27,495 | INFO     | [job] validate thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:31,186 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:23:03] 2025-11-25 17:22:55,808 | INFO     | PID=20442 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 12:23:03] 2025-11-25 17:22:55,808 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:23:03] 2025-11-25 17:22:55,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:23:03] 2025-11-25 17:22:55,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:23:03] 2025-11-25 17:22:56,782 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:23:03] 2025-11-25 17:22:58,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139662373336896)>', '<ExcThread(monitor, started 139661036996352)>']
[2025-11-25 12:23:03] 2025-11-25 17:22:58,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:23:03] 2025-11-25 17:22:58,824 | INFO     | [monitor] control thread has ended
[2025-11-25 12:23:03] 2025-11-25 17:23:03,175 | INFO     | all workflow threads have been joined
[2025-11-25 12:23:03] 2025-11-25 17:23:03,203 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:23:03] 2025-11-25 17:23:03,204 | INFO     | traces error code: 0
[2025-11-25 12:23:03] 2025-11-25 17:23:03,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:23:03] 2025-11-25 17:23:03,291 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:23:03] 2025-11-25 17:23:03,295 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:23:03] 2025-11-25 17:23:03,299 [wrapper] pilotpid: 20442
[2025-11-25 12:23:03] 2025-11-25 17:23:03,303 [wrapper] Pilot exit status: 0
[2025-11-25 12:23:03] 2025-11-25 17:23:03,318 [wrapper] pandaids: 6895617841
[2025-11-25 12:23:03] 2025-11-25 17:23:03,365 [wrapper] cleanup supervisor_pilot  1760 20443
[2025-11-25 12:23:03] 2025-11-25 17:23:03,369 [wrapper] Test setup, not cleaning
[2025-11-25 12:23:03] 2025-11-25 17:23:03,373 [wrapper] apfmon messages muted
[2025-11-25 12:23:03] 2025-11-25 17:23:03,377 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:23:03] 2025-11-25 17:23:03,381 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:23:03]  *** Error codes and diagnostics ***
[2025-11-25 12:23:03]     "exeErrorCode": 0,
[2025-11-25 12:23:03]     "exeErrorDiag": "",
[2025-11-25 12:23:03]     "pilotErrorCode": 0,
[2025-11-25 12:23:03]     "pilotErrorDiag": "",
[2025-11-25 12:23:03]  *** Listing of results directory ***
[2025-11-25 12:23:03] total 1323164
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 06:12 pilot3.tar.gz
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 06:15 queuedata.json
[2025-11-25 12:23:03] -rwx------ 1 boincer umatlas     36292 Nov 24 06:18 runpilot2-wrapper.sh
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas       100 Nov 25 05:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:23:03] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 05:05 run_atlas
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas       105 Nov 25 05:05 job.xml
[2025-11-25 12:23:03] -rw-r--r-- 2 boincer umatlas 411117257 Nov 25 05:05 EVNT.47483658._001322.pool.root.1
[2025-11-25 12:23:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 05:05 start_atlas.sh
[2025-11-25 12:23:03] drwxrwx--x 2 boincer umatlas      4096 Nov 25 05:05 shared
[2025-11-25 12:23:03] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 05:05 input.tar.gz
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas         0 Nov 25 05:05 boinc_lockfile
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 05:05 pandaJob.out
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas        57 Nov 25 05:06 setup.sh.local
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas    991894 Nov 25 05:06 agis_schedconf.cvmfs.json
[2025-11-25 12:23:03] drwx------ 5 boincer umatlas      4096 Nov 25 05:06 pilot3
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas       533 Nov 25 12:11 boinc_task_state.xml
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas      5955 Nov 25 12:20 init_data.xml
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas 928163941 Nov 25 12:21 HITS.47556149._003087.pool.root.1
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas      1064 Nov 25 12:22 memory_monitor_summary.json
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas   1516240 Nov 25 12:22 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas   2180427 Nov 25 12:22 log.47556149._003087.job.log.tgz.1
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas      8667 Nov 25 12:22 heartbeat.json
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas        95 Nov 25 12:22 pilot_heartbeat.json
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas      4746 Nov 25 12:23 pilotlog.txt
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas   3678281 Nov 25 12:23 log.47556149._003087.job.log.1
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas       353 Nov 25 12:23 output.list
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas       620 Nov 25 12:23 runtime_log
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas   5877760 Nov 25 12:23 result.tar.gz
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 12:23 boinc_mmap_file
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas      9345 Nov 25 12:23 runtime_log.err
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas       670 Nov 25 12:23 i6cKDmeljh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhdLKDm1DFRWm.diag
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas        29 Nov 25 12:23 wrapper_checkpoint.txt
[2025-11-25 12:23:03] -rw-r--r-- 1 boincer umatlas     21319 Nov 25 12:23 stderr.txt
[2025-11-25 12:23:03] HITS file was successfully produced:
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas 928163941 Nov 25 12:21 shared/HITS.pool.root.1
[2025-11-25 12:23:03]  *** Contents of shared directory: ***
[2025-11-25 12:23:03] total 1314236
[2025-11-25 12:23:03] -rw-r--r-- 2 boincer umatlas 411117257 Nov 25 05:05 ATLAS.root_0
[2025-11-25 12:23:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 05:05 start_atlas.sh
[2025-11-25 12:23:03] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 05:05 input.tar.gz
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas 928163941 Nov 25 12:21 HITS.pool.root.1
[2025-11-25 12:23:03] -rw------- 1 boincer umatlas   5877760 Nov 25 12:23 result.tar.gz
12:23:05 (16714): run_atlas exited; CPU time 291809.178915
12:23:05 (16714): called boinc_finish(0)

</stderr_txt>
]]>

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