Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:22:11 (30269): wrapper (7.7.26015): starting
05:22:11 (30269): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 05:22:11] Arguments: --nthreads 8
[2025-11-25 05:22:11] Threads: 8
[2025-11-25 05:22:11] Checking for CVMFS
[2025-11-25 05:22:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:22:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:22:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:22:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:22:12] 2.11.2.0 2831 41487 81324 153279 0 81 15361306 20275201 1 130560 0 5354202 99.624 2721586 24966 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 05:22:12] CVMFS is ok
[2025-11-25 05:22:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:22:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:22:12] Further information can be found at the LHC@home message board.
[2025-11-25 05:22:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:22:12] Checking for apptainer binary...
[2025-11-25 05:22:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:22:12] Running /usr/bin/apptainer --version
[2025-11-25 05:22:12] apptainer version 1.3.2-1.el7
[2025-11-25 05:22:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:22:13] c-204-31.aglt2.org
[2025-11-25 05:22:13] apptainer works
[2025-11-25 05:22:13] Set ATHENA_PROC_NUMBER=8
[2025-11-25 05:22:13] Set ATHENA_CORE_NUMBER=8
[2025-11-25 05:22:13] Starting ATLAS job with PandaID=6895617900
[2025-11-25 05:22:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:48:47 (13534): wrapper (7.7.26015): starting
15:48:47 (13534): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 15:48:47] Arguments: --nthreads 8
[2025-11-25 15:48:47] Threads: 8
[2025-11-25 15:48:47] This job has been restarted, cleaning up previous attempt
[2025-11-25 15:48:48] Checking for CVMFS
[2025-11-25 15:48:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:48:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:48:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:48:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:48:48] 2.11.2.0 2831 42114 83324 153297 2 49 16167926 20275201 1 130560 0 5561135 99.637 2747747 25041 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 15:48:48] CVMFS is ok
[2025-11-25 15:48:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:48:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:48:48] Further information can be found at the LHC@home message board.
[2025-11-25 15:48:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:48:48] Checking for apptainer binary...
[2025-11-25 15:48:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:48:48] Running /usr/bin/apptainer --version
[2025-11-25 15:48:48] apptainer version 1.3.2-1.el7
[2025-11-25 15:48:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:48:50] c-204-31.aglt2.org
[2025-11-25 15:48:50] apptainer works
[2025-11-25 15:48:50] Set ATHENA_PROC_NUMBER=8
[2025-11-25 15:48:50] Set ATHENA_CORE_NUMBER=8
[2025-11-25 15:48:50] Starting ATLAS job with PandaID=6895617900
[2025-11-25 15:48:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:09:28]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:09:28] 2025-11-26 09:08:44,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,092 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 04:09:28] 2025-11-26 09:08:45,095 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-26 04:09:28] 2025-11-26 09:08:45,098 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895617900/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,098 | INFO     | extracted standard info from prmon json
[2025-11-26 04:09:28] 2025-11-26 09:08:45,099 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:09:28] 2025-11-26 09:08:45,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:09:28] 2025-11-26 09:08:45,111 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:09:28] 2025-11-26 09:08:45,112 | INFO     | sum of square deviations: 119146673929.20486
[2025-11-26 04:09:28] 2025-11-26 09:08:45,123 | INFO     | sum of deviations: 782719329033.0535
[2025-11-26 04:09:28] 2025-11-26 09:08:45,123 | INFO     | mean x: 1764125924.6313617
[2025-11-26 04:09:28] 2025-11-26 09:08:45,124 | INFO     | mean y: 3169459.3397524073
[2025-11-26 04:09:28] 2025-11-26 09:08:45,124 | INFO     | intersect: -11586037477.966227
[2025-11-26 04:09:28] 2025-11-26 09:08:45,124 | INFO     | chi2: 5.552573088879489
[2025-11-26 04:09:28] 2025-11-26 09:08:45,125 | INFO     | sum of square deviations: 116705363494.69789
[2025-11-26 04:09:28] 2025-11-26 09:08:45,136 | INFO     | sum of deviations: 1028314841438.3275
[2025-11-26 04:09:28] 2025-11-26 09:08:45,136 | INFO     | mean x: 1764125772.135734
[2025-11-26 04:09:28] 2025-11-26 09:08:45,136 | INFO     | mean y: 3184794.1191135733
[2025-11-26 04:09:28] 2025-11-26 09:08:45,136 | INFO     | intersect: -15540888411.509012
[2025-11-26 04:09:28] 2025-11-26 09:08:45,137 | INFO     | chi2: 2.8714186951628387
[2025-11-26 04:09:28] 2025-11-26 09:08:45,137 | INFO     | current chi2=2.8714186951628387 (change=48.28670151296844 %)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,138 | INFO     | sum of square deviations: 114297635085.16335
[2025-11-26 04:09:28] 2025-11-26 09:08:45,149 | INFO     | sum of deviations: 1117767921954.2258
[2025-11-26 04:09:28] 2025-11-26 09:08:45,149 | INFO     | mean x: 1764125619.6401675
[2025-11-26 04:09:28] 2025-11-26 09:08:45,149 | INFO     | mean y: 3190452.1171548115
[2025-11-26 04:09:28] 2025-11-26 09:08:45,149 | INFO     | intersect: -17248986519.542393
[2025-11-26 04:09:28] 2025-11-26 09:08:45,150 | INFO     | chi2: 2.3905052839026517
[2025-11-26 04:09:28] 2025-11-26 09:08:45,150 | INFO     | current chi2=2.3905052839026517 (change=16.748285858496654 %)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,150 | INFO     | right removable region: 716
[2025-11-26 04:09:28] 2025-11-26 09:08:45,151 | INFO     | sum of square deviations: 116705083504.69795
[2025-11-26 04:09:28] 2025-11-26 09:08:45,162 | INFO     | sum of deviations: 563620409639.0248
[2025-11-26 04:09:28] 2025-11-26 09:08:45,162 | INFO     | mean x: 1764126077.135734
[2025-11-26 04:09:28] 2025-11-26 09:08:45,162 | INFO     | mean y: 3183122.2548476453
[2025-11-26 04:09:28] 2025-11-26 09:08:45,162 | INFO     | intersect: -8516561111.595111
[2025-11-26 04:09:28] 2025-11-26 09:08:45,163 | INFO     | chi2: 3.318312971439943
[2025-11-26 04:09:28] 2025-11-26 09:08:45,163 | INFO     | current chi2=3.318312971439943 (change=40.23828379520567 %)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,164 | INFO     | sum of square deviations: 114297119269.44218
[2025-11-26 04:09:28] 2025-11-26 09:08:45,174 | INFO     | sum of deviations: 519667111807.574
[2025-11-26 04:09:28] 2025-11-26 09:08:45,174 | INFO     | mean x: 1764126229.6387727
[2025-11-26 04:09:28] 2025-11-26 09:08:45,174 | INFO     | mean y: 3185904.5620641564
[2025-11-26 04:09:28] 2025-11-26 09:08:45,175 | INFO     | intersect: -8017649515.263475
[2025-11-26 04:09:28] 2025-11-26 09:08:45,175 | INFO     | chi2: 3.2786531037059286
[2025-11-26 04:09:28] 2025-11-26 09:08:45,175 | INFO     | current chi2=3.2786531037059286 (change=1.195181650295161 %)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,176 | INFO     | left removable region: 20
[2025-11-26 04:09:28] 2025-11-26 09:08:45,176 | INFO     | sum of square deviations: 104545697508.55011
[2025-11-26 04:09:28] 2025-11-26 09:08:45,187 | INFO     | sum of deviations: 811070862678.1554
[2025-11-26 04:09:28] 2025-11-26 09:08:45,187 | INFO     | mean x: 1764126199.1537356
[2025-11-26 04:09:28] 2025-11-26 09:08:45,187 | INFO     | mean y: 3211139.03591954
[2025-11-26 04:09:28] 2025-11-26 09:08:45,187 | INFO     | intersect: -13682970046.026598
[2025-11-26 04:09:28] 2025-11-26 09:08:45,188 | INFO     | chi2: 0.07078729276853064
[2025-11-26 04:09:28] 2025-11-26 09:08:45,188 | INFO     | current memory leak: 7.76 B/s (using 696 data points, chi2=0.07)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,189 | INFO     | could have reported an average CPU frequency of 2163 MHz (28 samples)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,189 | INFO     | ..............................
[2025-11-26 04:09:28] 2025-11-26 09:08:45,189 | INFO     | . Timing measurements:
[2025-11-26 04:09:28] 2025-11-26 09:08:45,189 | INFO     | . get job = 0 s
[2025-11-26 04:09:28] 2025-11-26 09:08:45,189 | INFO     | . initial setup = 2 s
[2025-11-26 04:09:28] 2025-11-26 09:08:45,189 | INFO     | . payload setup = 9 s
[2025-11-26 04:09:28] 2025-11-26 09:08:45,189 | INFO     | . stage-in = 0 s
[2025-11-26 04:09:28] 2025-11-26 09:08:45,189 | INFO     | . payload execution = 44334 s
[2025-11-26 04:09:28] 2025-11-26 09:08:45,190 | INFO     | . stage-out = 3 s
[2025-11-26 04:09:28] 2025-11-26 09:08:45,190 | INFO     | . log creation = 0 s
[2025-11-26 04:09:28] 2025-11-26 09:08:45,190 | INFO     | ..............................
[2025-11-26 04:09:28] 2025-11-26 09:08:45,281 | INFO     | 
[2025-11-26 04:09:28] 2025-11-26 09:08:45,281 | INFO     | job summary report
[2025-11-26 04:09:28] 2025-11-26 09:08:45,281 | INFO     | --------------------------------------------------
[2025-11-26 04:09:28] 2025-11-26 09:08:45,281 | INFO     | PanDA job id: 6895617900
[2025-11-26 04:09:28] 2025-11-26 09:08:45,282 | INFO     | task id: 47556149
[2025-11-26 04:09:28] 2025-11-26 09:08:45,282 | INFO     | errors: (none)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,282 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:09:28] 2025-11-26 09:08:45,282 | INFO     | pilot state: finished 
[2025-11-26 04:09:28] 2025-11-26 09:08:45,282 | INFO     | transexitcode: 0
[2025-11-26 04:09:28] 2025-11-26 09:08:45,282 | INFO     | exeerrorcode: 0
[2025-11-26 04:09:28] 2025-11-26 09:08:45,283 | INFO     | exeerrordiag: 
[2025-11-26 04:09:28] 2025-11-26 09:08:45,283 | INFO     | exitcode: 0
[2025-11-26 04:09:28] 2025-11-26 09:08:45,283 | INFO     | exitmsg: OK
[2025-11-26 04:09:28] 2025-11-26 09:08:45,283 | INFO     | cpuconsumptiontime: 344101 s
[2025-11-26 04:09:28] 2025-11-26 09:08:45,283 | INFO     | nevents: 1000
[2025-11-26 04:09:28] 2025-11-26 09:08:45,283 | INFO     | neventsw: 0
[2025-11-26 04:09:28] 2025-11-26 09:08:45,284 | INFO     | pid: 23770
[2025-11-26 04:09:28] 2025-11-26 09:08:45,284 | INFO     | pgrp: 23770
[2025-11-26 04:09:28] 2025-11-26 09:08:45,284 | INFO     | corecount: 8
[2025-11-26 04:09:28] 2025-11-26 09:08:45,284 | INFO     | event service: False
[2025-11-26 04:09:28] 2025-11-26 09:08:45,285 | INFO     | sizes: {0: 2284264, 1: 2284264, 6: 2284554, 11: 2284582, 44347: 2330284, 44351: 2339462, 44359: 2339652}
[2025-11-26 04:09:28] 2025-11-26 09:08:45,285 | INFO     | --------------------------------------------------
[2025-11-26 04:09:28] 2025-11-26 09:08:45,285 | INFO     | 
[2025-11-26 04:09:28] 2025-11-26 09:08:45,285 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 04:09:28] 2025-11-26 09:08:45,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,314 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,314 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,315 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,315 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,315 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,315 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,315 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,316 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,316 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,316 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,316 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,316 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,317 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,317 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:09:28] 2025-11-26 09:08:45,317 | INFO     | job 6895617900 has completed (purged errors)
[2025-11-26 04:09:28] 2025-11-26 09:08:45,317 | INFO     | overall cleanup function is called
[2025-11-26 04:09:28] 2025-11-26 09:08:46,333 | INFO     | --- collectZombieJob: --- 10, [23770]
[2025-11-26 04:09:28] 2025-11-26 09:08:46,333 | INFO     | zombie collector waiting for pid 23770
[2025-11-26 04:09:28] 2025-11-26 09:08:46,334 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:09:28] 2025-11-26 09:08:46,334 | INFO     | collected zombie processes
[2025-11-26 04:09:28] 2025-11-26 09:08:46,334 | INFO     | will attempt to kill all subprocesses of pid=23770
[2025-11-26 04:09:28] 2025-11-26 09:08:46,425 | INFO     | process IDs to be killed: [23770] (in reverse order)
[2025-11-26 04:09:28] 2025-11-26 09:08:46,521 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:09:28] 2025-11-26 09:08:46,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:09:28] 2025-11-26 09:08:46,525 | INFO     | did not find any defunct processes belonging to 23770
[2025-11-26 04:09:28] 2025-11-26 09:08:46,529 | INFO     | did not find any defunct processes belonging to 23770
[2025-11-26 04:09:28] 2025-11-26 09:08:46,532 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:09:28] 2025-11-26 09:08:46,532 | INFO     | ready for new job
[2025-11-26 04:09:28] 2025-11-26 09:08:46,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:09:28] 2025-11-26 09:08:46,536 | INFO     | ***************************************
[2025-11-26 04:09:28] 2025-11-26 09:08:46,536 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:09:28] 2025-11-26 09:08:46,536 | INFO     | ***************************************
[2025-11-26 04:09:28] 2025-11-26 09:08:46,536 | INFO     | 
[2025-11-26 04:09:28] 2025-11-26 09:08:46,537 | INFO     | architecture information:
[2025-11-26 04:09:28] 2025-11-26 09:08:46,538 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:09:28] 2025-11-26 09:08:46,555 | INFO     | cat /etc/os-release:
[2025-11-26 04:09:28] NAME="CentOS Linux"
[2025-11-26 04:09:28] VERSION="7 (Core)"
[2025-11-26 04:09:28] ID="centos"
[2025-11-26 04:09:28] ID_LIKE="rhel fedora"
[2025-11-26 04:09:28] VERSION_ID="7"
[2025-11-26 04:09:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:09:28] ANSI_COLOR="0;31"
[2025-11-26 04:09:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:09:28] HOME_URL="https://www.centos.org/"
[2025-11-26 04:09:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:09:28] 
[2025-11-26 04:09:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:09:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:09:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:09:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:09:28] 
[2025-11-26 04:09:28] 2025-11-26 09:08:46,556 | INFO     | ***************************************
[2025-11-26 04:09:28] 2025-11-26 09:08:47,058 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 04:09:28] 2025-11-26 09:08:47,078 | INFO     | sufficient remaining disk space (17020485632 B)
[2025-11-26 04:09:28] 2025-11-26 09:08:47,079 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:09:28] 2025-11-26 09:08:47,079 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:09:28] 2025-11-26 09:08:47,079 | INFO     | update_server=False
[2025-11-26 04:09:28] 2025-11-26 09:08:47,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:09:28] 2025-11-26 09:08:47,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:09:28] 2025-11-26 09:08:47,444 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 04:09:28] 2025-11-26 09:08:47,444 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 04:09:28] 2025-11-26 09:08:47,444 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:09:28] 2025-11-26 09:08:47,445 | INFO     | will abort loop
[2025-11-26 04:09:28] 2025-11-26 09:08:47,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:09:28] 2025-11-26 09:08:47,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:09:28] 2025-11-26 09:08:47,993 | INFO     | all data control threads have been joined
[2025-11-26 04:09:28] 2025-11-26 09:08:48,085 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:48,086 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:48,097 | INFO     | all job control threads have been joined
[2025-11-26 04:09:28] 2025-11-26 09:08:48,228 | INFO     | all payload control threads have been joined
[2025-11-26 04:09:28] 2025-11-26 09:08:48,450 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:48,596 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:48,602 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:48,769 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:48,799 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:48,871 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:48,873 | INFO     | [job] validate thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:48,999 | INFO     | [data] control thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:49,082 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:49,100 | INFO     | [job] control thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:49,233 | INFO     | [payload] control thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:49,596 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:51,698 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:08:57,238 | INFO     | job.realtimelogging is not enabled
[2025-11-26 04:09:28] 2025-11-26 09:08:58,244 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:09:28] 2025-11-26 09:09:17,165 | INFO     | PID=17379 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 04:09:28] 2025-11-26 09:09:17,165 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:09:28] 2025-11-26 09:09:17,165 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:09:28] 2025-11-26 09:09:17,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:09:28] 2025-11-26 09:09:21,896 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:09:28] 2025-11-26 09:09:22,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140135259912000)>', '<ExcThread(monitor, started 140134431315712)>']
[2025-11-26 04:09:28] 2025-11-26 09:09:23,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:09:28] 2025-11-26 09:09:23,190 | INFO     | [monitor] control thread has ended
[2025-11-26 04:09:28] 2025-11-26 09:09:28,009 | INFO     | all workflow threads have been joined
[2025-11-26 04:09:28] 2025-11-26 09:09:28,010 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:09:28] 2025-11-26 09:09:28,013 | INFO     | traces error code: 0
[2025-11-26 04:09:28] 2025-11-26 09:09:28,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:09:28] 2025-11-26 09:09:28,161 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:09:28] 2025-11-26 09:09:28,166 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:09:28] 2025-11-26 09:09:28,172 [wrapper] pilotpid: 17379
[2025-11-26 04:09:28] 2025-11-26 09:09:28,177 [wrapper] Pilot exit status: 0
[2025-11-26 04:09:28] 2025-11-26 09:09:28,195 [wrapper] pandaids: 6895617900 6895617900
[2025-11-26 04:09:28] 2025-11-26 09:09:28,246 [wrapper] cleanup supervisor_pilot 25313 17380
[2025-11-26 04:09:28] 2025-11-26 09:09:28,251 [wrapper] Test setup, not cleaning
[2025-11-26 04:09:28] 2025-11-26 09:09:28,255 [wrapper] apfmon messages muted
[2025-11-26 04:09:28] 2025-11-26 09:09:28,260 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:09:28] 2025-11-26 09:09:28,264 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:09:28]  *** Error codes and diagnostics ***
[2025-11-26 04:09:28]     "exeErrorCode": 0,
[2025-11-26 04:09:28]     "exeErrorDiag": "",
[2025-11-26 04:09:28]     "pilotErrorCode": 0,
[2025-11-26 04:09:28]     "pilotErrorDiag": "",
[2025-11-26 04:09:28]  *** Listing of results directory ***
[2025-11-26 04:09:28] total 1722932
[2025-11-26 04:09:28] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 06:12 pilot3.tar.gz
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 06:15 queuedata.json
[2025-11-26 04:09:28] -rwx------ 1 boincer umatlas     36292 Nov 24 06:20 runpilot2-wrapper.sh
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas       100 Nov 25 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:09:28] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 05:22 run_atlas
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas       105 Nov 25 05:22 job.xml
[2025-11-26 04:09:28] -rw-r--r-- 3 boincer umatlas 410217411 Nov 25 05:22 EVNT.47483658._001323.pool.root.1
[2025-11-26 04:09:28] -rw-r--r-- 3 boincer umatlas 410217411 Nov 25 05:22 ATLAS.root_0
[2025-11-26 04:09:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 05:22 start_atlas.sh
[2025-11-26 04:09:28] drwxrwx--x 2 boincer umatlas      4096 Nov 25 05:22 shared
[2025-11-26 04:09:28] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 05:22 input.tar.gz
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas         0 Nov 25 05:22 boinc_lockfile
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 15:48 pandaJob.out
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas        57 Nov 25 15:48 setup.sh.local
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas    991893 Nov 25 15:49 agis_schedconf.cvmfs.json
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas       533 Nov 26 03:57 boinc_task_state.xml
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas      5913 Nov 26 04:03 init_data.xml
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas 923757413 Nov 26 04:07 HITS.47556149._003098.pool.root.1
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas        96 Nov 26 04:08 pilot_heartbeat.json
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas      1062 Nov 26 04:08 memory_monitor_summary.json
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas   1516240 Nov 26 04:08 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas   1970381 Nov 26 04:08 log.47556149._003098.job.log.tgz.1
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas      8658 Nov 26 04:08 heartbeat.json
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 04:09 boinc_mmap_file
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas        29 Nov 26 04:09 wrapper_checkpoint.txt
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas      5004 Nov 26 04:09 pilotlog.txt
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas   6107714 Nov 26 04:09 log.47556149._003098.job.log.1
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas       353 Nov 26 04:09 output.list
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas       620 Nov 26 04:09 runtime_log
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas   8099840 Nov 26 04:09 result.tar.gz
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas      9428 Nov 26 04:09 runtime_log.err
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas       793 Nov 26 04:09 H0UMDmwnjh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmK2IKDmXnnVyn.diag
[2025-11-26 04:09:28] -rw-r--r-- 1 boincer umatlas     23415 Nov 26 04:09 stderr.txt
[2025-11-26 04:09:28] HITS file was successfully produced:
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas 923757413 Nov 26 04:07 shared/HITS.pool.root.1
[2025-11-26 04:09:28]  *** Contents of shared directory: ***
[2025-11-26 04:09:28] total 1311228
[2025-11-26 04:09:28] -rw-r--r-- 3 boincer umatlas 410217411 Nov 25 05:22 ATLAS.root_0
[2025-11-26 04:09:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 05:22 start_atlas.sh
[2025-11-26 04:09:28] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 05:22 input.tar.gz
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas 923757413 Nov 26 04:07 HITS.pool.root.1
[2025-11-26 04:09:28] -rw------- 1 boincer umatlas   8099840 Nov 26 04:09 result.tar.gz
04:09:29 (13534): run_atlas exited; CPU time 341801.769080
04:09:29 (13534): called boinc_finish(0)

</stderr_txt>
]]>

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