Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:35:07 (29106): wrapper (7.7.26015): starting
05:35:07 (29106): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 05:35:07] Arguments: --nthreads 12
[2025-11-25 05:35:07] Threads: 12
[2025-11-25 05:35:07] Checking for CVMFS
[2025-11-25 05:35:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:35:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:35:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:35:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:35:07] 2.11.2.0 14820 141473 93036 153279 2 81 15664365 20275200 1 130560 0 68873903 99.962 5686880 35974 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 05:35:07] CVMFS is ok
[2025-11-25 05:35:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:35:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:35:07] Further information can be found at the LHC@home message board.
[2025-11-25 05:35:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:35:07] Checking for apptainer binary...
[2025-11-25 05:35:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:35:07] Running /usr/bin/apptainer --version
[2025-11-25 05:35:07] apptainer version 1.3.2-1.el7
[2025-11-25 05:35:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:35:08] c-205-27.aglt2.org
[2025-11-25 05:35:08] apptainer works
[2025-11-25 05:35:08] Set ATHENA_PROC_NUMBER=12
[2025-11-25 05:35:08] Set ATHENA_CORE_NUMBER=12
[2025-11-25 05:35:08] Starting ATLAS job with PandaID=6895366382
[2025-11-25 05:35:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:47:27]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:47:27] 2025-11-25 17:46:54,197 | INFO     | time since job start (25891s) is within the limit (172800.0s)
[2025-11-25 12:47:27] 2025-11-25 17:46:55,315 | INFO     | PID=756 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 12:47:27] 2025-11-25 17:46:55,383 | INFO     | monitor loop #1941: job 0:6895366382 is in state 'finished'
[2025-11-25 12:47:27] 2025-11-25 17:46:55,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,116 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 12:47:27] 2025-11-25 17:46:56,119 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-11-25 12:47:27] 2025-11-25 17:46:56,122 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895366382/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,122 | INFO     | extracted standard info from prmon json
[2025-11-25 12:47:27] 2025-11-25 17:46:56,123 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:47:27] 2025-11-25 17:46:56,123 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:47:27] 2025-11-25 17:46:56,131 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:47:27] 2025-11-25 17:46:56,131 | INFO     | sum of square deviations: 23636006594.771122
[2025-11-25 12:47:27] 2025-11-25 17:46:56,135 | INFO     | sum of deviations: 396903344471.63416
[2025-11-25 12:47:27] 2025-11-25 17:46:56,135 | INFO     | mean x: 1764079853.662736
[2025-11-25 12:47:27] 2025-11-25 17:46:56,135 | INFO     | mean y: 3433261.7806603773
[2025-11-25 12:47:27] 2025-11-25 17:46:56,136 | INFO     | intersect: -29619557027.47852
[2025-11-25 12:47:27] 2025-11-25 17:46:56,136 | INFO     | chi2: 4.992683643898715
[2025-11-25 12:47:27] 2025-11-25 17:46:56,137 | INFO     | sum of square deviations: 22809667959.63727
[2025-11-25 12:47:27] 2025-11-25 17:46:56,140 | INFO     | sum of deviations: 540427082338.95496
[2025-11-25 12:47:27] 2025-11-25 17:46:56,140 | INFO     | mean x: 1764079701.1646779
[2025-11-25 12:47:27] 2025-11-25 17:46:56,141 | INFO     | mean y: 3459708.1455847253
[2025-11-25 12:47:27] 2025-11-25 17:46:56,141 | INFO     | intersect: -41792696535.81243
[2025-11-25 12:47:27] 2025-11-25 17:46:56,141 | INFO     | chi2: 2.5185445606589574
[2025-11-25 12:47:27] 2025-11-25 17:46:56,141 | INFO     | current chi2=2.5185445606589574 (change=49.5552945010499 %)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,142 | INFO     | sum of square deviations: 22002818061.999943
[2025-11-25 12:47:27] 2025-11-25 17:46:56,146 | INFO     | sum of deviations: 555871466409.6666
[2025-11-25 12:47:27] 2025-11-25 17:46:56,147 | INFO     | mean x: 1764079548.6666667
[2025-11-25 12:47:27] 2025-11-25 17:46:56,147 | INFO     | mean y: 3462590.961352657
[2025-11-25 12:47:27] 2025-11-25 17:46:56,147 | INFO     | intersect: -44563623443.994995
[2025-11-25 12:47:27] 2025-11-25 17:46:56,147 | INFO     | chi2: 2.3453686785386316
[2025-11-25 12:47:27] 2025-11-25 17:46:56,147 | INFO     | current chi2=2.3453686785386316 (change=6.8760301018861325 %)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,148 | INFO     | right removable region: 413
[2025-11-25 12:47:27] 2025-11-25 17:46:56,148 | INFO     | sum of square deviations: 22809625869.637283
[2025-11-25 12:47:27] 2025-11-25 17:46:56,153 | INFO     | sum of deviations: 265500195860.84286
[2025-11-25 12:47:27] 2025-11-25 17:46:56,153 | INFO     | mean x: 1764080006.1646779
[2025-11-25 12:47:27] 2025-11-25 17:46:56,153 | INFO     | mean y: 3457424.6109785205
[2025-11-25 12:47:27] 2025-11-25 17:46:56,153 | INFO     | intersect: -20530136148.020763
[2025-11-25 12:47:27] 2025-11-25 17:46:56,154 | INFO     | chi2: 2.790361481554627
[2025-11-25 12:47:27] 2025-11-25 17:46:56,154 | INFO     | current chi2=2.790361481554627 (change=44.11098958844358 %)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,154 | INFO     | sum of square deviations: 22002733881.99995
[2025-11-25 12:47:27] 2025-11-25 17:46:56,159 | INFO     | sum of deviations: 231943079794.6667
[2025-11-25 12:47:27] 2025-11-25 17:46:56,159 | INFO     | mean x: 1764080158.6666667
[2025-11-25 12:47:27] 2025-11-25 17:46:56,159 | INFO     | mean y: 3463759.61352657
[2025-11-25 12:47:27] 2025-11-25 17:46:56,159 | INFO     | intersect: -18592688300.405827
[2025-11-25 12:47:27] 2025-11-25 17:46:56,160 | INFO     | chi2: 2.7329625482017357
[2025-11-25 12:47:27] 2025-11-25 17:46:56,160 | INFO     | current chi2=2.7329625482017357 (change=2.0570429219411435 %)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,160 | INFO     | left removable region: 20
[2025-11-25 12:47:27] 2025-11-25 17:46:56,161 | INFO     | sum of square deviations: 18821448674.885532
[2025-11-25 12:47:27] 2025-11-25 17:46:56,164 | INFO     | sum of deviations: 348380106972.8474
[2025-11-25 12:47:27] 2025-11-25 17:46:56,164 | INFO     | mean x: 1764080128.1755726
[2025-11-25 12:47:27] 2025-11-25 17:46:56,164 | INFO     | mean y: 3502485.5674300254
[2025-11-25 12:47:27] 2025-11-25 17:46:56,164 | INFO     | intersect: -32649160674.33772
[2025-11-25 12:47:27] 2025-11-25 17:46:56,165 | INFO     | chi2: 0.04401179402700875
[2025-11-25 12:47:27] 2025-11-25 17:46:56,165 | INFO     | current memory leak: 18.51 B/s (using 393 data points, chi2=0.04)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,165 | INFO     | could have reported an average CPU frequency of 2427 MHz (18 samples)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,165 | INFO     | ..............................
[2025-11-25 12:47:27] 2025-11-25 17:46:56,165 | INFO     | . Timing measurements:
[2025-11-25 12:47:27] 2025-11-25 17:46:56,166 | INFO     | . get job = 0 s
[2025-11-25 12:47:27] 2025-11-25 17:46:56,166 | INFO     | . initial setup = 2 s
[2025-11-25 12:47:27] 2025-11-25 17:46:56,166 | INFO     | . payload setup = 7 s
[2025-11-25 12:47:27] 2025-11-25 17:46:56,166 | INFO     | . stage-in = 0 s
[2025-11-25 12:47:27] 2025-11-25 17:46:56,166 | INFO     | . payload execution = 25854 s
[2025-11-25 12:47:27] 2025-11-25 17:46:56,166 | INFO     | . stage-out = 3 s
[2025-11-25 12:47:27] 2025-11-25 17:46:56,166 | INFO     | . log creation = 0 s
[2025-11-25 12:47:27] 2025-11-25 17:46:56,166 | INFO     | ..............................
[2025-11-25 12:47:27] 2025-11-25 17:46:56,247 | INFO     | 
[2025-11-25 12:47:27] 2025-11-25 17:46:56,247 | INFO     | job summary report
[2025-11-25 12:47:27] 2025-11-25 17:46:56,248 | INFO     | --------------------------------------------------
[2025-11-25 12:47:27] 2025-11-25 17:46:56,248 | INFO     | PanDA job id: 6895366382
[2025-11-25 12:47:27] 2025-11-25 17:46:56,248 | INFO     | task id: 47556137
[2025-11-25 12:47:27] 2025-11-25 17:46:56,248 | INFO     | errors: (none)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,248 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:47:27] 2025-11-25 17:46:56,248 | INFO     | pilot state: finished 
[2025-11-25 12:47:27] 2025-11-25 17:46:56,249 | INFO     | transexitcode: 0
[2025-11-25 12:47:27] 2025-11-25 17:46:56,249 | INFO     | exeerrorcode: 0
[2025-11-25 12:47:27] 2025-11-25 17:46:56,249 | INFO     | exeerrordiag: 
[2025-11-25 12:47:27] 2025-11-25 17:46:56,249 | INFO     | exitcode: 0
[2025-11-25 12:47:27] 2025-11-25 17:46:56,249 | INFO     | exitmsg: OK
[2025-11-25 12:47:27] 2025-11-25 17:46:56,249 | INFO     | cpuconsumptiontime: 296757 s
[2025-11-25 12:47:27] 2025-11-25 17:46:56,250 | INFO     | nevents: 1000
[2025-11-25 12:47:27] 2025-11-25 17:46:56,250 | INFO     | neventsw: 0
[2025-11-25 12:47:27] 2025-11-25 17:46:56,250 | INFO     | pid: 8167
[2025-11-25 12:47:27] 2025-11-25 17:46:56,250 | INFO     | pgrp: 8167
[2025-11-25 12:47:27] 2025-11-25 17:46:56,250 | INFO     | corecount: 12
[2025-11-25 12:47:27] 2025-11-25 17:46:56,250 | INFO     | event service: False
[2025-11-25 12:47:27] 2025-11-25 17:46:56,251 | INFO     | sizes: {0: 2284314, 5: 2284576, 11: 2284632, 25864: 2321897, 25865: 2321896, 25869: 2330974, 25871: 2331158, 25876: 2331404}
[2025-11-25 12:47:27] 2025-11-25 17:46:56,251 | INFO     | --------------------------------------------------
[2025-11-25 12:47:27] 2025-11-25 17:46:56,251 | INFO     | 
[2025-11-25 12:47:27] 2025-11-25 17:46:56,251 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 12:47:27] 2025-11-25 17:46:56,275 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,275 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,275 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,276 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,276 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,276 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,276 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,276 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,276 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,277 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,277 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,277 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,277 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,277 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,278 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,278 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,278 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,278 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:47:27] 2025-11-25 17:46:56,278 | INFO     | job 6895366382 has completed (purged errors)
[2025-11-25 12:47:27] 2025-11-25 17:46:56,278 | INFO     | overall cleanup function is called
[2025-11-25 12:47:27] 2025-11-25 17:46:57,293 | INFO     | --- collectZombieJob: --- 10, [8167]
[2025-11-25 12:47:27] 2025-11-25 17:46:57,293 | INFO     | zombie collector waiting for pid 8167
[2025-11-25 12:47:27] 2025-11-25 17:46:57,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:47:27] 2025-11-25 17:46:57,294 | INFO     | collected zombie processes
[2025-11-25 12:47:27] 2025-11-25 17:46:57,294 | INFO     | will attempt to kill all subprocesses of pid=8167
[2025-11-25 12:47:27] 2025-11-25 17:46:57,382 | INFO     | process IDs to be killed: [8167] (in reverse order)
[2025-11-25 12:47:27] 2025-11-25 17:46:57,435 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:47:27] 2025-11-25 17:46:57,435 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:47:27] 2025-11-25 17:46:57,439 | INFO     | did not find any defunct processes belonging to 8167
[2025-11-25 12:47:27] 2025-11-25 17:46:57,441 | INFO     | did not find any defunct processes belonging to 8167
[2025-11-25 12:47:27] 2025-11-25 17:46:57,443 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:47:27] 2025-11-25 17:46:57,443 | INFO     | ready for new job
[2025-11-25 12:47:27] 2025-11-25 17:46:57,443 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:47:27] 2025-11-25 17:46:57,445 | INFO     | ***************************************
[2025-11-25 12:47:27] 2025-11-25 17:46:57,445 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:47:27] 2025-11-25 17:46:57,445 | INFO     | ***************************************
[2025-11-25 12:47:27] 2025-11-25 17:46:57,445 | INFO     | 
[2025-11-25 12:47:27] 2025-11-25 17:46:57,446 | INFO     | architecture information:
[2025-11-25 12:47:27] 2025-11-25 17:46:57,447 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:47:27] 2025-11-25 17:46:57,463 | INFO     | cat /etc/os-release:
[2025-11-25 12:47:27] NAME="CentOS Linux"
[2025-11-25 12:47:27] VERSION="7 (Core)"
[2025-11-25 12:47:27] ID="centos"
[2025-11-25 12:47:27] ID_LIKE="rhel fedora"
[2025-11-25 12:47:27] VERSION_ID="7"
[2025-11-25 12:47:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:47:27] ANSI_COLOR="0;31"
[2025-11-25 12:47:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:47:27] HOME_URL="https://www.centos.org/"
[2025-11-25 12:47:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:47:27] 
[2025-11-25 12:47:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:47:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:47:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:47:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:47:27] 
[2025-11-25 12:47:27] 2025-11-25 17:46:57,463 | INFO     | ***************************************
[2025-11-25 12:47:27] 2025-11-25 17:46:57,966 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 12:47:27] 2025-11-25 17:46:57,982 | INFO     | sufficient remaining disk space (28247588864 B)
[2025-11-25 12:47:27] 2025-11-25 17:46:57,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:47:27] 2025-11-25 17:46:57,983 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:47:27] 2025-11-25 17:46:57,983 | INFO     | update_server=False
[2025-11-25 12:47:27] 2025-11-25 17:46:57,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:47:27] 2025-11-25 17:46:57,983 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:47:27] 2025-11-25 17:46:58,647 | INFO     | all data control threads have been joined
[2025-11-25 12:47:27] 2025-11-25 17:46:58,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:47:27] 2025-11-25 17:46:58,892 | INFO     | aborting loop
[2025-11-25 12:47:27] 2025-11-25 17:46:58,989 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:46:58,989 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:46:59,053 | INFO     | all payload control threads have been joined
[2025-11-25 12:47:27] 2025-11-25 17:46:59,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:47:27] 2025-11-25 17:46:59,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:46:59,640 | INFO     | all job control threads have been joined
[2025-11-25 12:47:27] 2025-11-25 17:46:59,652 | INFO     | [data] control thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:46:59,815 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:46:59,897 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:46:59,937 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:46:59,951 | INFO     | [job] validate thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:46:59,960 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:47:00,059 | INFO     | [payload] control thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:47:00,219 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:47:00,227 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:47:00,355 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:47:00,645 | INFO     | [job] control thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:47:01,109 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:47:01,165 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:47:27] 2025-11-25 17:47:05,171 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:47:27] 2025-11-25 17:47:05,724 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:47:27] 2025-11-25 17:47:07,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139709873080128)>', '<ExcThread(monitor, started 139708701075200)>']
[2025-11-25 12:47:27] 2025-11-25 17:47:12,843 | INFO     | all workflow threads have been joined
[2025-11-25 12:47:27] 2025-11-25 17:47:12,843 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:47:27] 2025-11-25 17:47:12,843 | INFO     | traces error code: 0
[2025-11-25 12:47:27] 2025-11-25 17:47:12,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:47:27] 2025-11-25 17:47:27,515 | INFO     | PID=756 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-25 12:47:27] 2025-11-25 17:47:27,516 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:47:27] 2025-11-25 17:47:27,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:47:27] 2025-11-25 17:47:27,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:47:27] 2025-11-25 17:47:27,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:47:27] 2025-11-25 17:47:27,516 | INFO     | [monitor] control thread has ended
[2025-11-25 12:47:27] 2025-11-25 17:47:27,612 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:47:27] 2025-11-25 17:47:27,617 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:47:27] 2025-11-25 17:47:27,620 [wrapper] pilotpid: 756
[2025-11-25 12:47:27] 2025-11-25 17:47:27,624 [wrapper] Pilot exit status: 0
[2025-11-25 12:47:27] 2025-11-25 17:47:27,638 [wrapper] pandaids: 6895366382
[2025-11-25 12:47:27] 2025-11-25 17:47:27,677 [wrapper] cleanup supervisor_pilot  7671 757
[2025-11-25 12:47:27] 2025-11-25 17:47:27,680 [wrapper] Test setup, not cleaning
[2025-11-25 12:47:27] 2025-11-25 17:47:27,684 [wrapper] apfmon messages muted
[2025-11-25 12:47:27] 2025-11-25 17:47:27,688 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:47:27] 2025-11-25 17:47:27,692 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:47:27]  *** Error codes and diagnostics ***
[2025-11-25 12:47:27]     "exeErrorCode": 0,
[2025-11-25 12:47:27]     "exeErrorDiag": "",
[2025-11-25 12:47:27]     "pilotErrorCode": 0,
[2025-11-25 12:47:27]     "pilotErrorDiag": "",
[2025-11-25 12:47:27]  *** Listing of results directory ***
[2025-11-25 12:47:27] total 1312616
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 13:32 queuedata.json
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 13:33 pilot3.tar.gz
[2025-11-25 12:47:27] -rwx------ 1 boincer umatlas     36292 Nov 23 13:35 runpilot2-wrapper.sh
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas       100 Nov 25 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:47:27] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 05:35 run_atlas
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas       105 Nov 25 05:35 job.xml
[2025-11-25 12:47:27] -rw-r--r-- 2 boincer umatlas 410162112 Nov 25 05:35 EVNT.47483658._000844.pool.root.1
[2025-11-25 12:47:27] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 05:35 input.tar.gz
[2025-11-25 12:47:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 05:35 start_atlas.sh
[2025-11-25 12:47:27] drwxrwx--x 2 boincer umatlas      4096 Nov 25 05:35 shared
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas         0 Nov 25 05:35 boinc_lockfile
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 05:35 pandaJob.out
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas        57 Nov 25 05:35 setup.sh.local
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas    991894 Nov 25 05:35 agis_schedconf.cvmfs.json
[2025-11-25 12:47:27] drwx------ 5 boincer umatlas      4096 Nov 25 05:35 pilot3
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas       533 Nov 25 12:38 boinc_task_state.xml
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas      5956 Nov 25 12:45 init_data.xml
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas 918421019 Nov 25 12:46 HITS.47556137._008307.pool.root.1
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas      1062 Nov 25 12:46 memory_monitor_summary.json
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas   1516240 Nov 25 12:46 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas   2187871 Nov 25 12:46 log.47556137._008307.job.log.tgz.1
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas      8662 Nov 25 12:46 heartbeat.json
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 12:47 boinc_mmap_file
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas        29 Nov 25 12:47 wrapper_checkpoint.txt
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas       743 Nov 25 12:47 pilotlog.txt
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas        95 Nov 25 12:47 pilot_heartbeat.json
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas   3619747 Nov 25 12:47 log.47556137._008307.job.log.1
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas       353 Nov 25 12:47 output.list
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas       620 Nov 25 12:47 runtime_log
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas   5826560 Nov 25 12:47 result.tar.gz
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas      9345 Nov 25 12:47 runtime_log.err
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas       670 Nov 25 12:47 K1jKDmp6Th8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUgIKDmYbweQm.diag
[2025-11-25 12:47:27] -rw-r--r-- 1 boincer umatlas     21433 Nov 25 12:47 stderr.txt
[2025-11-25 12:47:27] HITS file was successfully produced:
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas 918421019 Nov 25 12:46 shared/HITS.pool.root.1
[2025-11-25 12:47:27]  *** Contents of shared directory: ***
[2025-11-25 12:47:27] total 1303744
[2025-11-25 12:47:27] -rw-r--r-- 2 boincer umatlas 410162112 Nov 25 05:35 ATLAS.root_0
[2025-11-25 12:47:27] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 05:35 input.tar.gz
[2025-11-25 12:47:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 05:35 start_atlas.sh
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas 918421019 Nov 25 12:46 HITS.pool.root.1
[2025-11-25 12:47:27] -rw------- 1 boincer umatlas   5826560 Nov 25 12:47 result.tar.gz
12:47:29 (29106): run_atlas exited; CPU time 288926.906148
12:47:29 (29106): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN