Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:45:11 (31920): wrapper (7.7.26015): starting
05:45:11 (31920): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 05:45:11] Arguments: --nthreads 8
[2025-11-25 05:45:11] Threads: 8
[2025-11-25 05:45:11] Checking for CVMFS
[2025-11-25 05:45:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:45:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:45:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:45:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:45:11] 2.11.2.0 11495 116157 132000 153279 1 81 10911952 18432000 1813 130560 0 82470724 99.974 4931522 25148 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 05:45:11] CVMFS is ok
[2025-11-25 05:45:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:45:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:45:11] Further information can be found at the LHC@home message board.
[2025-11-25 05:45:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:45:11] Checking for apptainer binary...
[2025-11-25 05:45:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:45:11] Running /usr/bin/apptainer --version
[2025-11-25 05:45:11] apptainer version 1.3.2-1.el7
[2025-11-25 05:45:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:45:12] c-206-31.aglt2.org
[2025-11-25 05:45:12] apptainer works
[2025-11-25 05:45:12] Set ATHENA_PROC_NUMBER=8
[2025-11-25 05:45:12] Set ATHENA_CORE_NUMBER=8
[2025-11-25 05:45:12] Starting ATLAS job with PandaID=6895559868
[2025-11-25 05:45:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:46:58 (13872): wrapper (7.7.26015): starting
15:46:58 (13872): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 15:46:58] Arguments: --nthreads 8
[2025-11-25 15:46:58] Threads: 8
[2025-11-25 15:46:58] This job has been restarted, cleaning up previous attempt
[2025-11-25 15:46:58] Checking for CVMFS
[2025-11-25 15:46:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:46:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:46:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:46:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:46:59] 2.11.2.0 11495 116759 129484 153297 3 49 11018733 18432000 1 130560 0 83103049 99.974 4957689 25179 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 15:46:59] CVMFS is ok
[2025-11-25 15:46:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:46:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:46:59] Further information can be found at the LHC@home message board.
[2025-11-25 15:46:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:46:59] Checking for apptainer binary...
[2025-11-25 15:46:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:46:59] Running /usr/bin/apptainer --version
[2025-11-25 15:46:59] apptainer version 1.3.2-1.el7
[2025-11-25 15:46:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:47:00] c-206-31.aglt2.org
[2025-11-25 15:47:00] apptainer works
[2025-11-25 15:47:00] Set ATHENA_PROC_NUMBER=8
[2025-11-25 15:47:00] Set ATHENA_CORE_NUMBER=8
[2025-11-25 15:47:00] Starting ATLAS job with PandaID=6895559868
[2025-11-25 15:47:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:11:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:11:18] 2025-11-26 16:10:36,015 | INFO     | monitor loop #4983: job 0:6895559868 is in state 'finished'
[2025-11-26 11:11:18] 2025-11-26 16:10:36,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,384 | INFO     | time since job start (69802s) is within the limit (172800.0s)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,545 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 11:11:18] 2025-11-26 16:10:37,549 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2117.2916666666665
[2025-11-26 11:11:18] 2025-11-26 16:10:37,552 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895559868/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,553 | INFO     | extracted standard info from prmon json
[2025-11-26 11:11:18] 2025-11-26 16:10:37,553 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:11:18] 2025-11-26 16:10:37,553 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:11:18] 2025-11-26 16:10:37,569 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:11:18] 2025-11-26 16:10:37,570 | INFO     | sum of square deviations: 464254481129.05963
[2025-11-26 11:11:18] 2025-11-26 16:10:37,597 | INFO     | sum of deviations: 2422670065969.7104
[2025-11-26 11:11:18] 2025-11-26 16:10:37,598 | INFO     | mean x: 1764138525.1416085
[2025-11-26 11:11:18] 2025-11-26 16:10:37,598 | INFO     | mean y: 2865591.896853147
[2025-11-26 11:11:18] 2025-11-26 16:10:37,598 | INFO     | intersect: -9203131917.6811
[2025-11-26 11:11:18] 2025-11-26 16:10:37,600 | INFO     | chi2: 4.706884934394578
[2025-11-26 11:11:18] 2025-11-26 16:10:37,601 | INFO     | sum of square deviations: 458194014616.99243
[2025-11-26 11:11:18] 2025-11-26 16:10:37,624 | INFO     | sum of deviations: 2716581058098.434
[2025-11-26 11:11:18] 2025-11-26 16:10:37,625 | INFO     | mean x: 1764138372.644425
[2025-11-26 11:11:18] 2025-11-26 16:10:37,625 | INFO     | mean y: 2872982.4776119404
[2025-11-26 11:11:18] 2025-11-26 16:10:37,625 | INFO     | intersect: -10456506088.627153
[2025-11-26 11:11:18] 2025-11-26 16:10:37,626 | INFO     | chi2: 2.5940035373372097
[2025-11-26 11:11:18] 2025-11-26 16:10:37,626 | INFO     | current chi2=2.5940035373372097 (change=44.88916611532033 %)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,627 | INFO     | sum of square deviations: 452186525842.406
[2025-11-26 11:11:18] 2025-11-26 16:10:37,653 | INFO     | sum of deviations: 2793505034022.053
[2025-11-26 11:11:18] 2025-11-26 16:10:37,653 | INFO     | mean x: 1764138220.1472664
[2025-11-26 11:11:18] 2025-11-26 16:10:37,653 | INFO     | mean y: 2874933.7601410933
[2025-11-26 11:11:18] 2025-11-26 16:10:37,653 | INFO     | intersect: -10895567892.485466
[2025-11-26 11:11:18] 2025-11-26 16:10:37,654 | INFO     | chi2: 2.361329838457432
[2025-11-26 11:11:18] 2025-11-26 16:10:37,654 | INFO     | current chi2=2.361329838457432 (change=8.969675466156895 %)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,654 | INFO     | right removable region: 1133
[2025-11-26 11:11:18] 2025-11-26 16:10:37,655 | INFO     | sum of square deviations: 458193636539.2739
[2025-11-26 11:11:18] 2025-11-26 16:10:37,681 | INFO     | sum of deviations: 2142859188626.5588
[2025-11-26 11:11:18] 2025-11-26 16:10:37,681 | INFO     | mean x: 1764138677.643547
[2025-11-26 11:11:18] 2025-11-26 16:10:37,681 | INFO     | mean y: 2872622.920105356
[2025-11-26 11:11:18] 2025-11-26 16:10:37,681 | INFO     | intersect: -8247571019.101
[2025-11-26 11:11:18] 2025-11-26 16:10:37,682 | INFO     | chi2: 2.7483291776996146
[2025-11-26 11:11:18] 2025-11-26 16:10:37,682 | INFO     | current chi2=2.7483291776996146 (change=41.61044478447363 %)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,684 | INFO     | sum of square deviations: 452185908645.5706
[2025-11-26 11:11:18] 2025-11-26 16:10:37,708 | INFO     | sum of deviations: 2051253361701.0615
[2025-11-26 11:11:18] 2025-11-26 16:10:37,708 | INFO     | mean x: 1764138830.143739
[2025-11-26 11:11:18] 2025-11-26 16:10:37,708 | INFO     | mean y: 2874947.938271605
[2025-11-26 11:11:18] 2025-11-26 16:10:37,708 | INFO     | intersect: -7999797485.350897
[2025-11-26 11:11:18] 2025-11-26 16:10:37,709 | INFO     | chi2: 2.661875273418659
[2025-11-26 11:11:18] 2025-11-26 16:10:37,709 | INFO     | current chi2=2.661875273418659 (change=3.1456895695921894 %)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,709 | INFO     | left removable region: 20
[2025-11-26 11:11:18] 2025-11-26 16:10:37,710 | INFO     | sum of square deviations: 427527308929.3425
[2025-11-26 11:11:18] 2025-11-26 16:10:37,734 | INFO     | sum of deviations: 2293166279341.4556
[2025-11-26 11:11:18] 2025-11-26 16:10:37,734 | INFO     | mean x: 1764138799.6495957
[2025-11-26 11:11:18] 2025-11-26 16:10:37,735 | INFO     | mean y: 2887948.7960467204
[2025-11-26 11:11:18] 2025-11-26 16:10:37,735 | INFO     | intersect: -9459580349.581026
[2025-11-26 11:11:18] 2025-11-26 16:10:37,736 | INFO     | chi2: 0.24970587883151926
[2025-11-26 11:11:18] 2025-11-26 16:10:37,736 | INFO     | current memory leak: 5.36 B/s (using 1113 data points, chi2=0.25)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,737 | INFO     | could have reported an average CPU frequency of 2575 MHz (41 samples)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,738 | INFO     | ..............................
[2025-11-26 11:11:18] 2025-11-26 16:10:37,738 | INFO     | . Timing measurements:
[2025-11-26 11:11:18] 2025-11-26 16:10:37,738 | INFO     | . get job = 0 s
[2025-11-26 11:11:18] 2025-11-26 16:10:37,738 | INFO     | . initial setup = 2 s
[2025-11-26 11:11:18] 2025-11-26 16:10:37,738 | INFO     | . payload setup = 7 s
[2025-11-26 11:11:18] 2025-11-26 16:10:37,738 | INFO     | . stage-in = 0 s
[2025-11-26 11:11:18] 2025-11-26 16:10:37,738 | INFO     | . payload execution = 69766 s
[2025-11-26 11:11:18] 2025-11-26 16:10:37,738 | INFO     | . stage-out = 3 s
[2025-11-26 11:11:18] 2025-11-26 16:10:37,738 | INFO     | . log creation = 0 s
[2025-11-26 11:11:18] 2025-11-26 16:10:37,739 | INFO     | ..............................
[2025-11-26 11:11:18] 2025-11-26 16:10:37,827 | INFO     | 
[2025-11-26 11:11:18] 2025-11-26 16:10:37,827 | INFO     | job summary report
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | --------------------------------------------------
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | PanDA job id: 6895559868
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | task id: 47556149
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | errors: (none)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | pilot state: finished 
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | transexitcode: 0
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | exeerrorcode: 0
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | exeerrordiag: 
[2025-11-26 11:11:18] 2025-11-26 16:10:37,828 | INFO     | exitcode: 0
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | exitmsg: OK
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | cpuconsumptiontime: 540374 s
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | nevents: 1000
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | neventsw: 0
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | pid: 12644
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | pgrp: 12644
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | corecount: 8
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | event service: False
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | sizes: {0: 2284264, 5: 2284526, 11: 2284582, 69777: 2340864, 69780: 2349858, 69782: 2349914, 69787: 2350384}
[2025-11-26 11:11:18] 2025-11-26 16:10:37,829 | INFO     | --------------------------------------------------
[2025-11-26 11:11:18] 2025-11-26 16:10:37,830 | INFO     | 
[2025-11-26 11:11:18] 2025-11-26 16:10:37,830 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 11:11:18] 2025-11-26 16:10:37,847 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,847 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,847 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,847 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,848 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,848 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,848 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,848 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,848 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,849 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,849 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,849 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,849 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,849 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,849 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:11:18] 2025-11-26 16:10:37,849 | INFO     | job 6895559868 has completed (purged errors)
[2025-11-26 11:11:18] 2025-11-26 16:10:37,849 | INFO     | overall cleanup function is called
[2025-11-26 11:11:18] 2025-11-26 16:10:38,858 | INFO     | --- collectZombieJob: --- 10, [12644]
[2025-11-26 11:11:18] 2025-11-26 16:10:38,858 | INFO     | zombie collector waiting for pid 12644
[2025-11-26 11:11:18] 2025-11-26 16:10:38,858 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:11:18] 2025-11-26 16:10:38,858 | INFO     | collected zombie processes
[2025-11-26 11:11:18] 2025-11-26 16:10:38,858 | INFO     | will attempt to kill all subprocesses of pid=12644
[2025-11-26 11:11:18] 2025-11-26 16:10:38,964 | INFO     | process IDs to be killed: [12644] (in reverse order)
[2025-11-26 11:11:18] 2025-11-26 16:10:39,000 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:11:18] 2025-11-26 16:10:39,001 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:11:18] 2025-11-26 16:10:39,003 | INFO     | did not find any defunct processes belonging to 12644
[2025-11-26 11:11:18] 2025-11-26 16:10:39,005 | INFO     | did not find any defunct processes belonging to 12644
[2025-11-26 11:11:18] 2025-11-26 16:10:39,007 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:11:18] 2025-11-26 16:10:39,007 | INFO     | ready for new job
[2025-11-26 11:11:18] 2025-11-26 16:10:39,007 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:11:18] 2025-11-26 16:10:39,012 | INFO     | ***************************************
[2025-11-26 11:11:18] 2025-11-26 16:10:39,012 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:11:18] 2025-11-26 16:10:39,012 | INFO     | ***************************************
[2025-11-26 11:11:18] 2025-11-26 16:10:39,012 | INFO     | 
[2025-11-26 11:11:18] 2025-11-26 16:10:39,013 | INFO     | architecture information:
[2025-11-26 11:11:18] 2025-11-26 16:10:39,013 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:11:18] 2025-11-26 16:10:39,026 | INFO     | cat /etc/os-release:
[2025-11-26 11:11:18] NAME="CentOS Linux"
[2025-11-26 11:11:18] VERSION="7 (Core)"
[2025-11-26 11:11:18] ID="centos"
[2025-11-26 11:11:18] ID_LIKE="rhel fedora"
[2025-11-26 11:11:18] VERSION_ID="7"
[2025-11-26 11:11:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:11:18] ANSI_COLOR="0;31"
[2025-11-26 11:11:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:11:18] HOME_URL="https://www.centos.org/"
[2025-11-26 11:11:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:11:18] 
[2025-11-26 11:11:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:11:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:11:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:11:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:11:18] 
[2025-11-26 11:11:18] 2025-11-26 16:10:39,027 | INFO     | ***************************************
[2025-11-26 11:11:18] 2025-11-26 16:10:39,529 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 11:11:18] 2025-11-26 16:10:39,736 | INFO     | sufficient remaining disk space (24696061952 B)
[2025-11-26 11:11:18] 2025-11-26 16:10:39,736 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:11:18] 2025-11-26 16:10:39,737 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:11:18] 2025-11-26 16:10:39,737 | INFO     | update_server=False
[2025-11-26 11:11:18] 2025-11-26 16:10:39,737 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:11:18] 2025-11-26 16:10:39,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:11:18] 2025-11-26 16:10:39,737 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:11:18] 2025-11-26 16:10:39,738 | INFO     | aborting loop
[2025-11-26 11:11:18] 2025-11-26 16:10:39,738 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:11:18] 2025-11-26 16:10:39,843 | INFO     | all data control threads have been joined
[2025-11-26 11:11:18] 2025-11-26 16:10:40,046 | INFO     | all job control threads have been joined
[2025-11-26 11:11:18] 2025-11-26 16:10:40,742 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:40,742 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:40,745 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:40,826 | INFO     | all payload control threads have been joined
[2025-11-26 11:11:18] 2025-11-26 16:10:40,846 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:40,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:40,867 | INFO     | [data] control thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:40,892 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:41,052 | INFO     | [job] control thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:41,077 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:41,160 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:41,460 | INFO     | [job] validate thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:41,743 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:41,750 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:41,832 | INFO     | [payload] control thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:41,928 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:10:43,037 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:11:18] 2025-11-26 16:10:47,043 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:11:18] 2025-11-26 16:11:10,593 | INFO     | PID=25366 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 11:11:18] 2025-11-26 16:11:10,593 | INFO     | .. there are 2 such processes running
[2025-11-26 11:11:18] 2025-11-26 16:11:10,593 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:11:18] 2025-11-26 16:11:10,593 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:11:18] 2025-11-26 16:11:10,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:11:18] 2025-11-26 16:11:11,325 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:11:18] 2025-11-26 16:11:13,181 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465693316928)>', '<ExcThread(monitor, started 140465403840256)>']
[2025-11-26 11:11:18] 2025-11-26 16:11:13,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:11:18] 2025-11-26 16:11:13,606 | INFO     | [monitor] control thread has ended
[2025-11-26 11:11:18] 2025-11-26 16:11:18,186 | INFO     | all workflow threads have been joined
[2025-11-26 11:11:18] 2025-11-26 16:11:18,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:11:18] 2025-11-26 16:11:18,186 | INFO     | traces error code: 0
[2025-11-26 11:11:18] 2025-11-26 16:11:18,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:11:18] 2025-11-26 16:11:18,285 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:11:18] 2025-11-26 16:11:18,288 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:11:18] 2025-11-26 16:11:18,291 [wrapper] pilotpid: 25366
[2025-11-26 11:11:18] 2025-11-26 16:11:18,293 [wrapper] Pilot exit status: 0
[2025-11-26 11:11:18] 2025-11-26 16:11:18,303 [wrapper] pandaids: 6895559868 6895559868
[2025-11-26 11:11:18] 2025-11-26 16:11:18,341 [wrapper] cleanup supervisor_pilot 20495 25367
[2025-11-26 11:11:18] 2025-11-26 16:11:18,345 [wrapper] Test setup, not cleaning
[2025-11-26 11:11:18] 2025-11-26 16:11:18,349 [wrapper] apfmon messages muted
[2025-11-26 11:11:18] 2025-11-26 16:11:18,352 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:11:18] 2025-11-26 16:11:18,355 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:11:18]  *** Error codes and diagnostics ***
[2025-11-26 11:11:18]     "exeErrorCode": 0,
[2025-11-26 11:11:18]     "exeErrorDiag": "",
[2025-11-26 11:11:18]     "pilotErrorCode": 0,
[2025-11-26 11:11:18]     "pilotErrorDiag": "",
[2025-11-26 11:11:18]  *** Listing of results directory ***
[2025-11-26 11:11:18] total 1727248
[2025-11-26 11:11:18] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 05:13 pilot3.tar.gz
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 06:06 queuedata.json
[2025-11-26 11:11:18] -rwx------ 1 boincer umatlas     36292 Nov 24 06:09 runpilot2-wrapper.sh
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas       100 Nov 25 05:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:11:18] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 05:45 run_atlas
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas       105 Nov 25 05:45 job.xml
[2025-11-26 11:11:18] -rw-r--r-- 3 boincer umatlas 409849524 Nov 25 05:45 EVNT.47483658._001318.pool.root.1
[2025-11-26 11:11:18] -rw-r--r-- 3 boincer umatlas 409849524 Nov 25 05:45 ATLAS.root_0
[2025-11-26 11:11:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 05:45 start_atlas.sh
[2025-11-26 11:11:18] drwxrwx--x 2 boincer umatlas      4096 Nov 25 05:45 shared
[2025-11-26 11:11:18] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 05:45 input.tar.gz
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas         0 Nov 25 05:45 boinc_lockfile
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 15:47 pandaJob.out
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas        57 Nov 25 15:47 setup.sh.local
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas    991893 Nov 25 15:47 agis_schedconf.cvmfs.json
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas       534 Nov 26 10:59 boinc_task_state.xml
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas      5955 Nov 26 11:00 init_data.xml
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas 921176121 Nov 26 11:09 HITS.47556149._003043.pool.root.1
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas      1063 Nov 26 11:10 memory_monitor_summary.json
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas   1516240 Nov 26 11:10 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas   2298861 Nov 26 11:10 log.47556149._003043.job.log.tgz.1
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas      8651 Nov 26 11:10 heartbeat.json
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas        96 Nov 26 11:10 pilot_heartbeat.json
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 11:11 boinc_mmap_file
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas        30 Nov 26 11:11 wrapper_checkpoint.txt
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas      4821 Nov 26 11:11 pilotlog.txt
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas   9649768 Nov 26 11:11 log.47556149._003043.job.log.1
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas       353 Nov 26 11:11 output.list
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas       620 Nov 26 11:11 runtime_log
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas  11970560 Nov 26 11:11 result.tar.gz
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas       793 Nov 26 11:11 VJhNDmscjh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm01IKDmHJAdfn.diag
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas      9428 Nov 26 11:11 runtime_log.err
[2025-11-26 11:11:18] -rw-r--r-- 1 boincer umatlas     23446 Nov 26 11:11 stderr.txt
[2025-11-26 11:11:18] HITS file was successfully produced:
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas 921176121 Nov 26 11:09 shared/HITS.pool.root.1
[2025-11-26 11:11:18]  *** Contents of shared directory: ***
[2025-11-26 11:11:18] total 1312128
[2025-11-26 11:11:18] -rw-r--r-- 3 boincer umatlas 409849524 Nov 25 05:45 ATLAS.root_0
[2025-11-26 11:11:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 05:45 start_atlas.sh
[2025-11-26 11:11:18] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 05:45 input.tar.gz
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas 921176121 Nov 26 11:09 HITS.pool.root.1
[2025-11-26 11:11:18] -rw------- 1 boincer umatlas  11970560 Nov 26 11:11 result.tar.gz
11:11:20 (13872): run_atlas exited; CPU time 539278.270430
11:11:20 (13872): called boinc_finish(0)

</stderr_txt>
]]>

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