Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:09:10 (8862): wrapper (7.7.26015): starting
17:09:10 (8862): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 17:09:10] Arguments: --nthreads 8
[2025-11-27 17:09:10] Threads: 8
[2025-11-27 17:09:10] Checking for CVMFS
[2025-11-27 17:09:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:09:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:09:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:09:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:09:14] 2.11.2.0 4250 84538 90192 153372 3 85 22045922 25165824 1338 130560 19 23032521 99.893 13520507 1667 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 17:09:14] CVMFS is ok
[2025-11-27 17:09:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:09:14] Checking for apptainer binary...
[2025-11-27 17:09:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 17:09:14] Running /usr/bin/apptainer --version
[2025-11-27 17:09:14] apptainer version 1.3.2-1.el7
[2025-11-27 17:09:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:09:36] cg-vwn215.simple-grid.lan
[2025-11-27 17:09:36] apptainer works
[2025-11-27 17:09:36] Set ATHENA_PROC_NUMBER=8
[2025-11-27 17:09:36] Set ATHENA_CORE_NUMBER=8
[2025-11-27 17:09:36] Starting ATLAS job with PandaID=6895617860
[2025-11-27 17:09:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 16:21:05]  *** The last 200 lines of the pilot log: ***
[2025-11-28 16:21:05] 2025-11-28 15:20:05,165 | INFO     | time since job start (83196s) is within the limit (172800.0s)
[2025-11-28 16:21:05] 2025-11-28 15:20:06,704 | INFO     | monitor loop #5623: job 0:6895617860 is in state 'finished'
[2025-11-28 16:21:05] 2025-11-28 15:20:06,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:21:05] 2025-11-28 15:20:07,173 | INFO     | time since job start (83198s) is within the limit (172800.0s)
[2025-11-28 16:21:05] 2025-11-28 15:20:09,180 | INFO     | time since job start (83200s) is within the limit (172800.0s)
[2025-11-28 16:21:05] 2025-11-28 15:20:09,214 | INFO     | monitor loop #5624: job 0:6895617860 is in state 'finished'
[2025-11-28 16:21:05] 2025-11-28 15:20:09,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:21:05] 2025-11-28 15:20:11,192 | INFO     | time since job start (83202s) is within the limit (172800.0s)
[2025-11-28 16:21:05] 2025-11-28 15:20:11,721 | INFO     | monitor loop #5625: job 0:6895617860 is in state 'finished'
[2025-11-28 16:21:05] 2025-11-28 15:20:11,721 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:21:05] 2025-11-28 15:20:13,199 | INFO     | time since job start (83204s) is within the limit (172800.0s)
[2025-11-28 16:21:05] 2025-11-28 15:20:14,232 | INFO     | monitor loop #5626: job 0:6895617860 is in state 'finished'
[2025-11-28 16:21:05] 2025-11-28 15:20:14,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:21:05] 2025-11-28 15:20:15,205 | INFO     | time since job start (83206s) is within the limit (172800.0s)
[2025-11-28 16:21:05] 2025-11-28 15:20:16,310 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 16:21:05] 2025-11-28 15:20:16,321 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 16:21:05] 2025-11-28 15:20:16,322 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6895617860/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 16:21:05] 2025-11-28 15:20:16,323 | INFO     | extracted standard info from prmon json
[2025-11-28 16:21:05] 2025-11-28 15:20:16,323 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 16:21:05] 2025-11-28 15:20:16,323 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 16:21:05] 2025-11-28 15:20:16,361 | INFO     | fitting pss+swap vs Time
[2025-11-28 16:21:05] 2025-11-28 15:20:16,363 | INFO     | sum of square deviations: 769723474367.2294
[2025-11-28 16:21:05] 2025-11-28 15:20:16,453 | INFO     | sum of deviations: 3262324718486.668
[2025-11-28 16:21:05] 2025-11-28 15:20:16,453 | INFO     | mean x: 1764301786.582718
[2025-11-28 16:21:05] 2025-11-28 15:20:16,453 | INFO     | mean y: 2827802.7038404727
[2025-11-28 16:21:05] 2025-11-28 15:20:16,453 | INFO     | intersect: -7474825563.617916
[2025-11-28 16:21:05] 2025-11-28 15:20:16,455 | INFO     | chi2: 24.367770323891783
[2025-11-28 16:21:05] 2025-11-28 15:20:16,457 | INFO     | sum of square deviations: 761228162198.8435
[2025-11-28 16:21:05] 2025-11-28 15:20:16,554 | INFO     | PID=12664 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 16:21:05] 2025-11-28 15:20:16,554 | INFO     | .. there are 9 such processes running
[2025-11-28 16:21:05] 2025-11-28 15:20:16,565 | INFO     | sum of deviations: 3713321628634.3525
[2025-11-28 16:21:05] 2025-11-28 15:20:16,565 | INFO     | mean x: 1764301634.086731
[2025-11-28 16:21:05] 2025-11-28 15:20:16,565 | INFO     | mean y: 2835898.0140845072
[2025-11-28 16:21:05] 2025-11-28 15:20:16,565 | INFO     | intersect: -8603544872.719757
[2025-11-28 16:21:05] 2025-11-28 15:20:16,567 | INFO     | chi2: 21.08026046447927
[2025-11-28 16:21:05] 2025-11-28 15:20:16,567 | INFO     | current chi2=21.08026046447927 (change=13.491221460624239 %)
[2025-11-28 16:21:05] 2025-11-28 15:20:16,567 | INFO     | right removable region: 1348
[2025-11-28 16:21:05] 2025-11-28 15:20:16,569 | INFO     | sum of square deviations: 761227267938.8435
[2025-11-28 16:21:05] 2025-11-28 15:20:16,617 | INFO     | sum of deviations: 2697135504845.013
[2025-11-28 16:21:05] 2025-11-28 15:20:16,617 | INFO     | mean x: 1764301939.086731
[2025-11-28 16:21:05] 2025-11-28 15:20:16,617 | INFO     | mean y: 2837946.90585619
[2025-11-28 16:21:05] 2025-11-28 15:20:16,617 | INFO     | intersect: -6248332500.603685
[2025-11-28 16:21:05] 2025-11-28 15:20:16,619 | INFO     | chi2: 19.630454295539803
[2025-11-28 16:21:05] 2025-11-28 15:20:16,619 | INFO     | current chi2=19.630454295539803 (change=19.44090889475924 %)
[2025-11-28 16:21:05] 2025-11-28 15:20:16,619 | INFO     | left removable region: 10
[2025-11-28 16:21:05] 2025-11-28 15:20:16,621 | INFO     | sum of square deviations: 742757223136.2557
[2025-11-28 16:21:05] 2025-11-28 15:20:16,668 | INFO     | sum of deviations: 2776204766555.653
[2025-11-28 16:21:05] 2025-11-28 15:20:16,668 | INFO     | mean x: 1764301908.5956652
[2025-11-28 16:21:05] 2025-11-28 15:20:16,668 | INFO     | mean y: 2856828.9402092677
[2025-11-28 16:21:05] 2025-11-28 15:20:16,668 | INFO     | intersect: -6591577012.584333
[2025-11-28 16:21:05] 2025-11-28 15:20:16,670 | INFO     | chi2: 12.080187311074834
[2025-11-28 16:21:05] 2025-11-28 15:20:16,670 | INFO     | current memory leak: 3.74 B/s (using 1338 data points, chi2=12.08)
[2025-11-28 16:21:05] 2025-11-28 15:20:16,671 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | ..............................
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | . Timing measurements:
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | . get job = 0 s
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | . initial setup = 8 s
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | . payload setup = 167 s
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | . stage-in = 0 s
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | . payload execution = 82744 s
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | . stage-out = 4 s
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | . log creation = 1 s
[2025-11-28 16:21:05] 2025-11-28 15:20:16,672 | INFO     | ..............................
[2025-11-28 16:21:05] 2025-11-28 15:20:16,785 | INFO     | 
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | job summary report
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | --------------------------------------------------
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | PanDA job id: 6895617860
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | task id: 47556161
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | errors: (none)
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | pilot state: finished 
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | transexitcode: 0
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | exeerrorcode: 0
[2025-11-28 16:21:05] 2025-11-28 15:20:16,786 | INFO     | exeerrordiag: 
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | exitcode: 0
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | exitmsg: OK
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | cpuconsumptiontime: 310602 s
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | nevents: 1000
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | neventsw: 0
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | pid: 19258
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | pgrp: 19258
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | corecount: 8
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | event service: False
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | sizes: {0: 2284142, 1: 2284341, 12: 2284341, 22: 2284369, 33: 2284397, 44: 2284453, 55: 2284609, 65: 2284637, 76: 2284665, 87: 2284721, 92: 2285011, 98: 2285319, 8
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | --------------------------------------------------
[2025-11-28 16:21:05] 2025-11-28 15:20:16,787 | INFO     | 
[2025-11-28 16:21:05] 2025-11-28 15:20:16,788 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-11-28 16:21:05] 2025-11-28 15:20:17,217 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,217 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,217 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,218 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,219 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 16:21:05] 2025-11-28 15:20:17,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,219 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 16:21:05] 2025-11-28 15:20:17,219 | INFO     | job 6895617860 has completed (purged errors)
[2025-11-28 16:21:05] 2025-11-28 15:20:17,219 | INFO     | overall cleanup function is called
[2025-11-28 16:21:05] 2025-11-28 15:20:18,235 | INFO     | --- collectZombieJob: --- 10, [19258]
[2025-11-28 16:21:05] 2025-11-28 15:20:18,235 | INFO     | zombie collector waiting for pid 19258
[2025-11-28 16:21:05] 2025-11-28 15:20:18,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 16:21:05] 2025-11-28 15:20:18,235 | INFO     | collected zombie processes
[2025-11-28 16:21:05] 2025-11-28 15:20:18,235 | INFO     | will attempt to kill all subprocesses of pid=19258
[2025-11-28 16:21:05] 2025-11-28 15:20:18,354 | INFO     | process IDs to be killed: [19258] (in reverse order)
[2025-11-28 16:21:05] 2025-11-28 15:20:19,312 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 16:21:05] 2025-11-28 15:20:19,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 16:21:05] 2025-11-28 15:20:19,316 | INFO     | did not find any defunct processes belonging to 19258
[2025-11-28 16:21:05] 2025-11-28 15:20:19,330 | INFO     | did not find any defunct processes belonging to 19258
[2025-11-28 16:21:05] 2025-11-28 15:20:19,382 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 16:21:05] 2025-11-28 15:20:19,382 | INFO     | ready for new job
[2025-11-28 16:21:05] 2025-11-28 15:20:19,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 16:21:05] 2025-11-28 15:20:19,388 | INFO     | ***************************************
[2025-11-28 16:21:05] 2025-11-28 15:20:19,388 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 16:21:05] 2025-11-28 15:20:19,388 | INFO     | ***************************************
[2025-11-28 16:21:05] 2025-11-28 15:20:19,388 | INFO     | 
[2025-11-28 16:21:05] 2025-11-28 15:20:19,389 | INFO     | pilot is running in a VM
[2025-11-28 16:21:05] 2025-11-28 15:20:19,389 | INFO     | architecture information:
[2025-11-28 16:21:05] 2025-11-28 15:20:19,394 | INFO     | executing command: cat /etc/os-release
[2025-11-28 16:21:05] 2025-11-28 15:20:19,563 | INFO     | cat /etc/os-release:
[2025-11-28 16:21:05] NAME="CentOS Linux"
[2025-11-28 16:21:05] VERSION="7 (Core)"
[2025-11-28 16:21:05] ID="centos"
[2025-11-28 16:21:05] ID_LIKE="rhel fedora"
[2025-11-28 16:21:05] VERSION_ID="7"
[2025-11-28 16:21:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 16:21:05] ANSI_COLOR="0;31"
[2025-11-28 16:21:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 16:21:05] HOME_URL="https://www.centos.org/"
[2025-11-28 16:21:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 16:21:05] 
[2025-11-28 16:21:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 16:21:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 16:21:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 16:21:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 16:21:05] 
[2025-11-28 16:21:05] 2025-11-28 15:20:19,563 | INFO     | ***************************************
[2025-11-28 16:21:05] 2025-11-28 15:20:20,067 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-11-28 16:21:05] 2025-11-28 15:20:20,319 | INFO     | sufficient remaining disk space (495617835008 B)
[2025-11-28 16:21:05] 2025-11-28 15:20:20,320 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 16:21:05] 2025-11-28 15:20:20,320 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 16:21:05] 2025-11-28 15:20:20,320 | INFO     | update_server=False
[2025-11-28 16:21:05] 2025-11-28 15:20:20,320 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 16:21:05] 2025-11-28 15:20:20,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:21:05] 2025-11-28 15:20:20,321 | INFO     | aborting loop
[2025-11-28 16:21:05] 2025-11-28 15:20:20,584 | INFO     | all data control threads have been joined
[2025-11-28 16:21:05] 2025-11-28 15:20:20,640 | INFO     | all payload control threads have been joined
[2025-11-28 16:21:05] 2025-11-28 15:20:21,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 16:21:05] 2025-11-28 15:20:21,327 | INFO     | [job] job monitor thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:21,329 | INFO     | [job] retrieve thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:21,501 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:21,508 | INFO     | all job control threads have been joined
[2025-11-28 16:21:05] 2025-11-28 15:20:21,590 | INFO     | [data] control thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:21,646 | INFO     | [payload] control thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:21,649 | INFO     | [payload] validate_post thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:21,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:21:05] 2025-11-28 15:20:22,032 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:22,332 | INFO     | [job] validate thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:22,454 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:22,515 | INFO     | [job] control thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:22,517 | INFO     | [data] copytool_in thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:22,624 | INFO     | [payload] failed_post thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:22,713 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:22,806 | INFO     | [job] queue monitor thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:23,313 | INFO     | [data] copytool_out thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:23,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 16:21:05] 2025-11-28 15:20:27,735 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 16:21:05] 2025-11-28 15:20:48,721 | INFO     | PID=12664 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 16:21:05] 2025-11-28 15:20:48,721 | INFO     | .. there are 9 such processes running
[2025-11-28 16:21:05] 2025-11-28 15:20:48,723 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 16:21:05] 2025-11-28 15:20:48,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 16:21:05] 2025-11-28 15:20:48,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 16:21:05] 2025-11-28 15:20:54,182 | INFO     | [monitor] cgroup control has ended
[2025-11-28 16:21:05] 2025-11-28 15:20:55,962 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139950279440192)>', '<ExcThread(monitor, started 139949579933440)>']
[2025-11-28 16:21:05] 2025-11-28 15:20:56,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 16:21:05] 2025-11-28 15:20:56,771 | INFO     | [monitor] control thread has ended
[2025-11-28 16:21:05] 2025-11-28 15:21:00,988 | INFO     | all workflow threads have been joined
[2025-11-28 16:21:05] 2025-11-28 15:21:00,988 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 16:21:05] 2025-11-28 15:21:00,988 | INFO     | traces error code: 0
[2025-11-28 16:21:05] 2025-11-28 15:21:00,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 16:21:05] 2025-11-28 15:21:01,289 [wrapper] ==== pilot stdout END ====
[2025-11-28 16:21:05] 2025-11-28 15:21:01,418 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 16:21:05] 2025-11-28 15:21:01,483 [wrapper] pilotpid: 12664
[2025-11-28 16:21:05] 2025-11-28 15:21:01,599 [wrapper] Pilot exit status: 0
[2025-11-28 16:21:05] 2025-11-28 15:21:01,995 [wrapper] pandaids: 6895617860
[2025-11-28 16:21:05] 2025-11-28 15:21:02,717 [wrapper] cleanup supervisor_pilot 32309 12665
[2025-11-28 16:21:05] 2025-11-28 15:21:02,731 [wrapper] Test setup, not cleaning
[2025-11-28 16:21:05] 2025-11-28 15:21:02,736 [wrapper] apfmon messages muted
[2025-11-28 16:21:05] 2025-11-28 15:21:02,743 [wrapper] ==== wrapper stdout END ====
[2025-11-28 16:21:05] 2025-11-28 15:21:02,751 [wrapper] ==== wrapper stderr END ====
[2025-11-28 16:21:05]  *** Error codes and diagnostics ***
[2025-11-28 16:21:05]     "exeErrorCode": 0,
[2025-11-28 16:21:05]     "exeErrorDiag": "",
[2025-11-28 16:21:05]     "pilotErrorCode": 0,
[2025-11-28 16:21:05]     "pilotErrorDiag": "",
[2025-11-28 16:21:05]  *** Listing of results directory ***
[2025-11-28 16:21:05] total 1324844
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc    576529 Nov 24 12:12 pilot3.tar.gz
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc      5112 Nov 24 12:21 queuedata.json
[2025-11-28 16:21:05] -rwx------. 1 boinc boinc     36292 Nov 24 12:22 runpilot2-wrapper.sh
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc       100 Nov 27 17:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 16:21:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 17:09 run_atlas
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc       105 Nov 27 17:09 job.xml
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc      6394 Nov 27 17:09 init_data.xml
[2025-11-28 16:21:05] -rw-r--r--. 2 boinc boinc 412684672 Nov 27 17:09 EVNT.47483658._002037.pool.root.1
[2025-11-28 16:21:05] -rw-r--r--. 2 boinc boinc     15847 Nov 27 17:09 start_atlas.sh
[2025-11-28 16:21:05] drwxrwx--x. 2 boinc boinc        68 Nov 27 17:09 shared
[2025-11-28 16:21:05] -rw-r--r--. 2 boinc boinc    590104 Nov 27 17:09 input.tar.gz
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc         0 Nov 27 17:09 boinc_lockfile
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc      2784 Nov 27 17:09 pandaJob.out
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc    991572 Nov 27 17:13 agis_schedconf.cvmfs.json
[2025-11-28 16:21:05] drwx------. 5 boinc boinc      4096 Nov 27 17:13 pilot3
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc       533 Nov 28 15:53 boinc_task_state.xml
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc 912925458 Nov 28 16:17 HITS.47556161._000202.pool.root.1
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc      1032 Nov 28 16:18 memory_monitor_summary.json
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc   1516240 Nov 28 16:18 agis_ddmendpoints.agis.ALL.json
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc   2449933 Nov 28 16:18 log.47556161._000202.job.log.tgz.1
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc      7944 Nov 28 16:20 heartbeat.json
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc        29 Nov 28 16:20 wrapper_checkpoint.txt
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc      8192 Nov 28 16:20 boinc_mmap_file
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc        95 Nov 28 16:20 pilot_heartbeat.json
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc      4885 Nov 28 16:21 pilotlog.txt
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc  11113284 Nov 28 16:21 log.47556161._000202.job.log.1
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc       353 Nov 28 16:21 output.list
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc       620 Nov 28 16:21 runtime_log
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc  13578240 Nov 28 16:21 result.tar.gz
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc      8833 Nov 28 16:21 runtime_log.err
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc       662 Nov 28 16:21 Ez2KDmvpjh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmN2IKDm5kTVDm.diag
[2025-11-28 16:21:05] -rw-r--r--. 1 boinc boinc     21499 Nov 28 16:21 stderr.txt
[2025-11-28 16:21:05] HITS file was successfully produced:
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc 912925458 Nov 28 16:17 shared/HITS.pool.root.1
[2025-11-28 16:21:05]  *** Contents of shared directory: ***
[2025-11-28 16:21:05] total 1308404
[2025-11-28 16:21:05] -rw-r--r--. 2 boinc boinc 412684672 Nov 27 17:09 ATLAS.root_0
[2025-11-28 16:21:05] -rw-r--r--. 2 boinc boinc     15847 Nov 27 17:09 start_atlas.sh
[2025-11-28 16:21:05] -rw-r--r--. 2 boinc boinc    590104 Nov 27 17:09 input.tar.gz
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc 912925458 Nov 28 16:17 HITS.pool.root.1
[2025-11-28 16:21:05] -rw-------. 1 boinc boinc  13578240 Nov 28 16:21 result.tar.gz
16:21:06 (8862): run_atlas exited; CPU time 311150.423066
16:21:06 (8862): called boinc_finish(0)

</stderr_txt>
]]>

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