Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:04:13 (1060963): wrapper (7.7.26015): starting
02:04:13 (1060963): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 02:04:13] Arguments: --nthreads 12
[2025-11-25 02:04:13] Threads: 12
[2025-11-25 02:04:13] Checking for CVMFS
[2025-11-25 02:04:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:04:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:04:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:04:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:04:14] 2.11.5.0 538441 26474 291788 153277 3 204 44653814 45568001 13024 130560 0 217948016 99.793 132424598 25956 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 02:04:14] CVMFS is ok
[2025-11-25 02:04:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:04:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:04:14] Further information can be found at the LHC@home message board.
[2025-11-25 02:04:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:04:14] Checking for apptainer binary...
[2025-11-25 02:04:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:04:14] Running /usr/bin/apptainer --version
[2025-11-25 02:04:14] apptainer version 1.4.1-1.el9
[2025-11-25 02:04:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:04:14] wns0030.triumf.lcg
[2025-11-25 02:04:14] apptainer works
[2025-11-25 02:04:14] Set ATHENA_PROC_NUMBER=12
[2025-11-25 02:04:14] Set ATHENA_CORE_NUMBER=12
[2025-11-25 02:04:14] Starting ATLAS job with PandaID=6896255102
[2025-11-25 02:04:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:09:42]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 02:09:42] 2025-11-25 10:08:55,019 | WARNING  | wrong length of table data, x=[1764065126.0, 1764065187.0], y=[1453.0, 398004.0] (must be same and length>=4)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | could have reported an average CPU frequency of 2072 MHz (4 samples)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | ..............................
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . Timing measurements:
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . get job = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . initial setup = 3 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . payload setup = 14 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . stage-in = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . payload execution = 91 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . stage-out = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . log creation = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | ..............................
[2025-11-25 02:09:42] 2025-11-25 10:08:55,025 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 02:09:42] 2025-11-25 10:08:55,025 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896255102/pilotlog.txt
[2025-11-25 02:09:42] 2025-11-25 10:08:55,190 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 02:09:42] - Log from pilotlog.txt -
[2025-11-25 02:09:42] 2025-11-25 10:08:55,017 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896255102/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | INFO     | extracted standard info from prmon json
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 02:09:42] 2025-11-25 10:08:55,019 | WARNING  | wrong length of table data, x=[1764065126.0, 1764065187.0], y=[1453.0, 398004.0] (must be same and length>=4)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | could have reported an average CPU frequency of 2072 MHz (4 samples)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | ..............................
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . Timing measurements:
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . get job = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . initial setup = 3 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . payload setup = 14 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . stage-in = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . payload execution = 91 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . stage-out = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . log creation = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | ..............................
[2025-11-25 02:09:42] 2025-11-25 10:08:55,025 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 02:09:42] 2025-11-25 10:08:55,025 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896255102/pilotlog.txt
[2025-11-25 02:09:42] 2025-11-25 10:08:55,190 | WARNING  | 
[2025-11-25 02:09:42] [begin log extracts]
[2025-11-25 02:09:42] - Log from pilotlog.txt -
[2025-11-25 02:09:42] 2025-11-25 10:08:55,017 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896255102/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | INFO     | extracted standard info from prmon json
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 02:09:42] 2025-11-25 10:08:55,018 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 02:09:42] 2025-11-25 10:08:55,019 | WARNING  | wrong length of table data, x=[1764065126.0, 1764065187.0], y=[1453.0, 398004.0] (must be same and length>=4)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | could have reported an average CPU frequency of 2072 MHz (4 samples)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | ..............................
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . Timing measurements:
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . get job = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . initial setup = 3 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . payload setup = 14 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . stage-in = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . payload execution = 91 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . stage-out = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | . log creation = 0 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,024 | INFO     | ..............................
[2025-11-25 02:09:42] 2025-11-25 10:08:55,025 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 02:09:42] 2025-11-25 10:08:55,025 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896255102/pilotlog.txt
[2025-11-25 02:09:42] [end log extracts]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,190 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,191 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | 
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | job summary report
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | --------------------------------------------------
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | PanDA job id: 6896255102
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | task id: 47556161
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 02:06:38,649 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | pilot state: failed 
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | transexitcode: 65
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | exeerrorcode: 65
[2025-11-25 02:09:42] 2025-11-25 10:08:55,657 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | exitcode: 65
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | cpuconsumptiontime: 51 s
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | nevents: 0
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | neventsw: 0
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | pid: 1071467
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | pgrp: 1071467
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | corecount: 12
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | event service: False
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | sizes: {0: 2284310, 1: 2284338, 10: 2284600, 12: 2284628, 109: 2310048, 110: 2310052, 111: 2314526, 238: 2314664}
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | --------------------------------------------------
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | 
[2025-11-25 02:09:42] 2025-11-25 10:08:55,658 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 02:09:42] 2025-11-25 10:08:55,838 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,838 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,838 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,838 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,838 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,839 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:09:42] 2025-11-25 10:08:55,840 | INFO     | job 6896255102 has completed (purged errors)
[2025-11-25 02:09:42] 2025-11-25 10:08:55,840 | INFO     | overall cleanup function is called
[2025-11-25 02:09:42] 2025-11-25 10:08:56,875 | INFO     | --- collectZombieJob: --- 10, [1071467]
[2025-11-25 02:09:42] 2025-11-25 10:08:56,875 | INFO     | zombie collector waiting for pid 1071467
[2025-11-25 02:09:42] 2025-11-25 10:08:56,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:09:42] 2025-11-25 10:08:56,875 | INFO     | collected zombie processes
[2025-11-25 02:09:42] 2025-11-25 10:08:56,875 | INFO     | will attempt to kill all subprocesses of pid=1071467
[2025-11-25 02:09:42] 2025-11-25 10:08:57,220 | INFO     | process IDs to be killed: [1071467] (in reverse order)
[2025-11-25 02:09:42] 2025-11-25 10:08:57,304 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:09:42] 2025-11-25 10:08:57,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:09:42] 2025-11-25 10:08:57,311 | INFO     | did not find any defunct processes belonging to 1071467
[2025-11-25 02:09:42] 2025-11-25 10:08:57,317 | INFO     | did not find any defunct processes belonging to 1071467
[2025-11-25 02:09:42] 2025-11-25 10:08:57,318 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:09:42] 2025-11-25 10:08:57,318 | INFO     | ready for new job
[2025-11-25 02:09:42] 2025-11-25 10:08:57,318 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:09:42] 2025-11-25 10:08:57,320 | INFO     | ***************************************
[2025-11-25 02:09:42] 2025-11-25 10:08:57,320 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:09:42] 2025-11-25 10:08:57,320 | INFO     | ***************************************
[2025-11-25 02:09:42] 2025-11-25 10:08:57,320 | INFO     | 
[2025-11-25 02:09:42] 2025-11-25 10:08:57,322 | INFO     | architecture information:
[2025-11-25 02:09:42] 2025-11-25 10:08:57,323 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:09:42] 2025-11-25 10:08:57,337 | INFO     | cat /etc/os-release:
[2025-11-25 02:09:42] NAME="CentOS Linux"
[2025-11-25 02:09:42] VERSION="7 (Core)"
[2025-11-25 02:09:42] ID="centos"
[2025-11-25 02:09:42] ID_LIKE="rhel fedora"
[2025-11-25 02:09:42] VERSION_ID="7"
[2025-11-25 02:09:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:09:42] ANSI_COLOR="0;31"
[2025-11-25 02:09:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:09:42] HOME_URL="https://www.centos.org/"
[2025-11-25 02:09:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:09:42] 
[2025-11-25 02:09:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:09:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:09:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:09:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:09:42] 
[2025-11-25 02:09:42] 2025-11-25 10:08:57,337 | INFO     | ***************************************
[2025-11-25 02:09:42] 2025-11-25 10:08:57,840 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 02:09:42] 2025-11-25 10:08:57,860 | INFO     | sufficient remaining disk space (1811785187328 B)
[2025-11-25 02:09:42] 2025-11-25 10:08:57,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:09:42] 2025-11-25 10:08:57,860 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:09:42] 2025-11-25 10:08:57,860 | INFO     | update_server=False
[2025-11-25 02:09:42] 2025-11-25 10:08:57,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:09:42] 2025-11-25 10:08:57,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:09:42] 2025-11-25 10:08:57,861 | INFO     | aborting loop
[2025-11-25 02:09:42] 2025-11-25 10:08:58,467 | INFO     | all payload control threads have been joined
[2025-11-25 02:09:42] 2025-11-25 10:08:58,527 | INFO     | all data control threads have been joined
[2025-11-25 02:09:42] 2025-11-25 10:08:58,867 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:58,867 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:58,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:58,970 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:58,977 | INFO     | [job] validate thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:58,998 | INFO     | all job control threads have been joined
[2025-11-25 02:09:42] 2025-11-25 10:08:59,041 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:59,142 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:59,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:09:42] 2025-11-25 10:08:59,470 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:59,473 | INFO     | [payload] control thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:59,533 | INFO     | [data] control thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:08:59,838 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:09:00,004 | INFO     | [job] control thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:09:00,480 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:09:00,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:09:42] 2025-11-25 10:09:00,989 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:09:42] 2025-11-25 10:09:01,340 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:09:01,671 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:09:04,997 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:09:42] 2025-11-25 10:09:27,444 | INFO     | PID=1064899 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 02:09:42] 2025-11-25 10:09:27,444 | INFO     | .. there are 14 such processes running
[2025-11-25 02:09:42] 2025-11-25 10:09:27,445 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:09:42] 2025-11-25 10:09:27,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:09:42] 2025-11-25 10:09:27,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:09:42] 2025-11-25 10:09:35,547 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:09:42] 2025-11-25 10:09:36,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140222560229184)>', '<ExcThread(monitor, started 140221840594688)>']
[2025-11-25 02:09:42] 2025-11-25 10:09:37,510 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:09:42] 2025-11-25 10:09:37,510 | INFO     | [monitor] control thread has ended
[2025-11-25 02:09:42] 2025-11-25 10:09:41,691 | INFO     | all workflow threads have been joined
[2025-11-25 02:09:42] 2025-11-25 10:09:41,691 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:09:42] 2025-11-25 10:09:41,691 | INFO     | traces error code: 0
[2025-11-25 02:09:42] 2025-11-25 10:09:41,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:09:42] 2025-11-25 10:09:41,856 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:09:42] 2025-11-25 10:09:41,889 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:09:42] 2025-11-25 10:09:41,918 [wrapper] pilotpid: 1064899
[2025-11-25 02:09:42] 2025-11-25 10:09:41,955 [wrapper] Pilot exit status: 0
[2025-11-25 02:09:42] 2025-11-25 10:09:42,071 [wrapper] pandaids: 6896255102
[2025-11-25 02:09:42] 2025-11-25 10:09:42,143 [wrapper] cleanup supervisor_pilot 1064905 1064900
[2025-11-25 02:09:42] 2025-11-25 10:09:42,180 [wrapper] Test setup, not cleaning
[2025-11-25 02:09:42] 2025-11-25 10:09:42,211 [wrapper] apfmon messages muted
[2025-11-25 02:09:42] 2025-11-25 10:09:42,230 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:09:42] 2025-11-25 10:09:42,241 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:09:42]  *** Error codes and diagnostics ***
[2025-11-25 02:09:42]     "exeErrorCode": 65,
[2025-11-25 02:09:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 02:09:42]     "pilotErrorCode": 1305,
[2025-11-25 02:09:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 02:09:42]  *** Listing of results directory ***
[2025-11-25 02:09:42] total 402832
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc    576529 Nov 24 14:04 pilot3.tar.gz
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc      5112 Nov 24 14:51 queuedata.json
[2025-11-25 02:09:42] -rwx------. 1 boinc boinc     36292 Nov 24 14:54 runpilot2-wrapper.sh
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc       100 Nov 25 02:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:09:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 02:04 run_atlas
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc       105 Nov 25 02:04 job.xml
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc      6590 Nov 25 02:04 init_data.xml
[2025-11-25 02:09:42] -rw-r--r--. 2 boinc boinc 408277854 Nov 25 02:04 EVNT.47483658._002067.pool.root.1
[2025-11-25 02:09:42] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:04 start_atlas.sh
[2025-11-25 02:09:42] drwxrwx--x. 2 boinc boinc      4096 Nov 25 02:04 shared
[2025-11-25 02:09:42] -rw-r--r--. 2 boinc boinc    590102 Nov 25 02:04 input.tar.gz
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc         0 Nov 25 02:04 boinc_lockfile
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc      2785 Nov 25 02:04 pandaJob.out
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc    991894 Nov 25 02:04 agis_schedconf.cvmfs.json
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc   1516240 Nov 25 02:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:09:42] drwx------. 5 boinc boinc      4096 Nov 25 02:04 pilot3
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc       524 Nov 25 02:06 boinc_task_state.xml
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc       993 Nov 25 02:06 memory_monitor_summary.json
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc     49396 Nov 25 02:06 log.47556161._000505.job.log.tgz.1
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc        95 Nov 25 02:08 pilot_heartbeat.json
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc     10334 Nov 25 02:08 heartbeat.json
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc      4823 Nov 25 02:09 pilotlog.txt
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc     99565 Nov 25 02:09 log.47556161._000505.job.log.1
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc      8192 Nov 25 02:09 boinc_mmap_file
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc       186 Nov 25 02:09 output.list
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc       620 Nov 25 02:09 runtime_log
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc    174080 Nov 25 02:09 result.tar.gz
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc       645 Nov 25 02:09 SqYMDmocuh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjyLKDm5bAAvm.diag
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc      8636 Nov 25 02:09 runtime_log.err
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc        23 Nov 25 02:09 wrapper_checkpoint.txt
[2025-11-25 02:09:42] -rw-r--r--. 1 boinc boinc     22484 Nov 25 02:09 stderr.txt
[2025-11-25 02:09:42] No HITS result produced
[2025-11-25 02:09:42]  *** Contents of shared directory: ***
[2025-11-25 02:09:42] total 399484
[2025-11-25 02:09:42] -rw-r--r--. 2 boinc boinc 408277854 Nov 25 02:04 ATLAS.root_0
[2025-11-25 02:09:42] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:04 start_atlas.sh
[2025-11-25 02:09:42] -rw-r--r--. 2 boinc boinc    590102 Nov 25 02:04 input.tar.gz
[2025-11-25 02:09:42] -rw-------. 1 boinc boinc    174080 Nov 25 02:09 result.tar.gz
02:09:44 (1060963): run_atlas exited; CPU time 52.658704
02:09:44 (1060963): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN