Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 13:34:09 (8420): vboxwrapper version 26210
2025-11-26 13:34:09 (8420): BOINC client version: 8.2.4
2025-11-26 13:34:09 (8420): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-11-26 13:34:10 (8420): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 13:34:10 (8420): Create VM. (boinc_37481feb417ec442, slot#9)
2025-11-26 13:34:10 (8420): Setting Memory Size for VM. (4400MB)
2025-11-26 13:34:11 (8420): Setting CPU Count for VM. (4)
2025-11-26 13:34:11 (8420): Setting Chipset Options for VM.
2025-11-26 13:34:11 (8420): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 13:34:11 (8420): Setting Boot Options for VM.
2025-11-26 13:34:12 (8420): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 13:34:12 (8420): Enabling VM Network Access.
2025-11-26 13:34:12 (8420): Disabling USB Support for VM.
2025-11-26 13:34:13 (8420): Disabling COM Port Support for VM.
2025-11-26 13:34:13 (8420): Disabling LPT Port Support for VM.
2025-11-26 13:34:13 (8420): Disabling Audio Support for VM.
2025-11-26 13:34:13 (8420): Disabling Clipboard Support for VM.
2025-11-26 13:34:14 (8420): Disabling Drag and Drop Support for VM.
2025-11-26 13:34:14 (8420): Adding storage controller(s) to VM.
2025-11-26 13:34:14 (8420): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 13:34:15 (8420): Adding VirtualBox Guest Additions to VM.
2025-11-26 13:34:15 (8420): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 13:34:15 (8420): forwarding host port 56524 to guest port 80
2025-11-26 13:34:15 (8420): Enabling remote desktop for VM.
2025-11-26 13:34:16 (8420): Required extension pack not installed, remote desktop not enabled.
2025-11-26 13:34:16 (8420): Enabling shared directory for VM.
2025-11-26 13:34:16 (8420): Starting VM using VBoxManage interface. (boinc_37481feb417ec442, slot#9)
2025-11-26 13:34:21 (8420): Successfully started VM. (PID = '23316')
2025-11-26 13:34:21 (8420): Reporting VM Process ID to BOINC.
2025-11-26 13:34:21 (8420): Guest Log: BIOS: VirtualBox 7.1.8
2025-11-26 13:34:21 (8420): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 13:34:21 (8420): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 13:34:21 (8420): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 13:34:21 (8420): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 13:34:21 (8420): Detected: Web Application Enabled (http://localhost:56524)
2025-11-26 13:34:21 (8420): Preference change detected
2025-11-26 13:34:21 (8420): Setting CPU throttle for VM. (100%)
2025-11-26 13:34:21 (8420): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 13:34:23 (8420): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 13:34:23 (8420): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 13:34:26 (8420): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 13:34:26 (8420): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 13:34:26 (8420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 13:35:04 (8420): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 13:35:04 (8420): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 13:35:08 (8420): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 13:35:08 (8420): Guest Log: 00:00:00.000095 main     Log opened 2025-11-26T13:35:06.540890000Z
2025-11-26 13:35:08 (8420): Guest Log: 00:00:00.000181 main     OS Product: Linux
2025-11-26 13:35:08 (8420): Guest Log: 00:00:00.000234 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 13:35:08 (8420): Guest Log: 00:00:00.000262 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 13:35:08 (8420): Guest Log: 00:00:00.000304 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 13:35:08 (8420): Guest Log: 00:00:00.000305 main     Process ID: 1315
2025-11-26 13:35:08 (8420): Guest Log: 00:00:00.000305 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 13:35:08 (8420): Guest Log: 00:00:00.000906 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 13:35:08 (8420): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 13:35:08 (8420): Guest Log: [INFO] Mounting shared directory
2025-11-26 13:35:08 (8420): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 13:35:13 (8420): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 13:35:13 (8420): Guest Log: [INFO] Detected branch: prod
2025-11-26 13:35:13 (8420): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 13:35:13 (8420): Guest Log: Copying input files
2025-11-26 13:35:14 (8420): Guest Log: Copied input files into RunAtlas.
2025-11-26 13:35:14 (8420): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 13:35:14 (8420): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 13:35:14 (8420): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 13:35:14 (8420): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 13:35:18 (8420): Guest Log: 00:00:10.002436 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 575 511 561 000ns (GuestNow=1 764 185 682 054 372 000 ns GuestLast=1 764 164 106 542 811 000 ns fSetTimeLastLoop=true )
2025-11-26 13:35:23 (8420): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 13:35:23 (8420): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 13:35:23 (8420): Guest Log: 2.6.3.0 1595 0 30024 153333 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 13:35:23 (8420): Guest Log: copied the webapp to /var/www
2025-11-26 13:35:23 (8420): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-26 13:35:23 (8420): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-26 13:35:23 (8420): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 13:35:24 (8420): Guest Log:  *** Starting ATLAS job. (PandaID=6895617825 taskID=47556149) ***
2025-11-26 15:14:24 (8420): Status Report: Elapsed Time: '6000.000000'
2025-11-26 15:14:24 (8420): Status Report: CPU Time: '21940.859375'
2025-11-26 16:54:27 (8420): Status Report: Elapsed Time: '12000.000000'
2025-11-26 16:54:27 (8420): Status Report: CPU Time: '45822.328125'
2025-11-26 18:34:30 (8420): Status Report: Elapsed Time: '18000.000000'
2025-11-26 18:34:30 (8420): Status Report: CPU Time: '69707.906250'
2025-11-26 20:14:32 (8420): Status Report: Elapsed Time: '24000.000000'
2025-11-26 20:14:32 (8420): Status Report: CPU Time: '93593.546875'
2025-11-26 21:54:35 (8420): Status Report: Elapsed Time: '30000.000000'
2025-11-26 21:54:35 (8420): Status Report: CPU Time: '117483.359375'
2025-11-26 23:34:39 (8420): Status Report: Elapsed Time: '36000.485142'
2025-11-26 23:34:39 (8420): Status Report: CPU Time: '141352.140625'
2025-11-27 01:14:42 (8420): Status Report: Elapsed Time: '42000.485142'
2025-11-27 01:14:42 (8420): Status Report: CPU Time: '165244.843750'
2025-11-27 02:54:45 (8420): Status Report: Elapsed Time: '48000.485142'
2025-11-27 02:54:45 (8420): Status Report: CPU Time: '189137.234375'
2025-11-27 04:34:47 (8420): Status Report: Elapsed Time: '54000.485142'
2025-11-27 04:34:47 (8420): Status Report: CPU Time: '213016.031250'
2025-11-27 06:14:50 (8420): Status Report: Elapsed Time: '60000.485142'
2025-11-27 06:14:50 (8420): Status Report: CPU Time: '236907.156250'
2025-11-27 07:54:53 (8420): Status Report: Elapsed Time: '66000.485142'
2025-11-27 07:54:53 (8420): Status Report: CPU Time: '260511.140625'
2025-11-27 08:02:40 (8420): Guest Log:  *** Job finished ***
2025-11-27 08:02:40 (8420): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:04,718 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:04,719 | INFO     | traces error code: 0
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:04,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,232 | INFO     | PID=5996 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,233 | INFO     | found 0 job(s) in 20 queues
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,233 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,233 | CRITICAL | thread 'MainThread' is not alive
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,233 | INFO     | [monitor] control thread has ended
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,324 [wrapper] ==== pilot stdout END ====
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,327 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,330 [wrapper] pilotpid: 5996
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,333 [wrapper] Pilot exit status: 0
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,346 [wrapper] pandaids: 6895617825
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,369 [wrapper] cleanup supervisor_pilot  1718 5997
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,375 [wrapper] Test setup, not cleaning
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,379 [wrapper] apfmon messages muted
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,383 [wrapper] ==== wrapper stdout END ====
2025-11-27 08:02:40 (8420): Guest Log: 2025-11-27 14:02:08,387 [wrapper] ==== wrapper stderr END ====
2025-11-27 08:02:40 (8420): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 08:02:40 (8420): Guest Log:     "exeErrorCode": 0,
2025-11-27 08:02:40 (8420): Guest Log:     "exeErrorDiag": "",
2025-11-27 08:02:40 (8420): Guest Log:     "pilotErrorCode": 0,
2025-11-27 08:02:40 (8420): Guest Log:     "pilotErrorDiag": "",
2025-11-27 08:02:40 (8420): Guest Log:  *** Listing of results directory ***
2025-11-27 08:02:40 (8420): Guest Log: total 932048
2025-11-27 08:02:40 (8420): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 24 11:12 queuedata.json
2025-11-27 08:02:40 (8420): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 24 11:12 pilot3.tar.gz
2025-11-27 08:02:40 (8420): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 24 11:15 runpilot2-wrapper.sh
2025-11-27 08:02:40 (8420): Guest Log: -rwxr-xr-x. 1 atlas atlas      8721 Nov 26 19:34 init_data.xml
2025-11-27 08:02:40 (8420): Guest Log: -rwxr-xr-x. 1 atlas atlas    590102 Nov 26 19:34 input.tar.gz
2025-11-27 08:02:40 (8420): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 19:34 start_atlas.sh
2025-11-27 08:02:41 (8420): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 19:34 EVNT.47483658._001321.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 08:02:41 (8420): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 26 19:34 pandaJob.out
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas    991522 Nov 26 19:35 agis_schedconf.cvmfs.json
2025-11-27 08:02:41 (8420): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 19:35 pilot3
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas 929479611 Nov 27 14:00 HITS.47556149._003073.pool.root.1
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 27 14:01 memory_monitor_summary.json
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 14:01 agis_ddmendpoints.agis.ALL.json
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas   1761100 Nov 27 14:01 log.47556149._003073.job.log.tgz.1
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas      8602 Nov 27 14:01 heartbeat.json
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 14:02 pilot_heartbeat.json
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas       814 Nov 27 14:02 pilotlog.txt
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas   8787402 Nov 27 14:02 log.47556149._003073.job.log.1
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 14:02 output.list
2025-11-27 08:02:41 (8420): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 14:02 runtime_log
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas  10567680 Nov 27 14:02 result.tar.gz
2025-11-27 08:02:41 (8420): Guest Log: -rw-r--r--. 1 atlas atlas      8746 Nov 27 14:02 runtime_log.err
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas       665 Nov 27 14:02 H3vLDmnijh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLdLKDmFJK8Em.diag
2025-11-27 08:02:41 (8420): Guest Log: Looking for outputfile HITS.47556149._003073.pool.root.1
2025-11-27 08:02:41 (8420): Guest Log: HITS file was successfully produced
2025-11-27 08:02:41 (8420): Guest Log: -rw-------. 1 atlas atlas 929479611 Nov 27 14:00 /home/atlas/RunAtlas/HITS.47556149._003073.pool.root.1
2025-11-27 08:02:44 (8420): Guest Log: Successfully finished the ATLAS job!
2025-11-27 08:02:44 (8420): Guest Log: Copying the results back to the shared directory!
2025-11-27 08:02:44 (8420): Guest Log:  *** Contents of shared directory: ***
2025-11-27 08:02:44 (8420): Guest Log: total 1318688
2025-11-27 08:02:44 (8420): Guest Log: -rwxrwxrwx. 1 root root 409663901 Nov 26 19:34 ATLAS.root_0
2025-11-27 08:02:44 (8420): Guest Log: -rwxrwxrwx. 1 root root 929479611 Nov 27  2025 HITS.pool.root.1
2025-11-27 08:02:44 (8420): Guest Log: -rwxrwxrwx. 1 root root      8721 Nov 26 19:34 init_data.xml
2025-11-27 08:02:44 (8420): Guest Log: -rwxrwxrwx. 1 root root    590102 Nov 25 10:33 input.tar.gz
2025-11-27 08:02:44 (8420): Guest Log: -rwxrwxrwx. 1 root root  10567680 Nov 27  2025 result.tar.gz
2025-11-27 08:02:44 (8420): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 25 10:33 start_atlas.sh
2025-11-27 08:02:44 (8420): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 08:02:44 (8420): VM Completion File Detected.
2025-11-27 08:02:44 (8420): Powering off VM.
2025-11-27 08:02:45 (8420): Successfully stopped VM.
2025-11-27 08:02:45 (8420): Deregistering VM. (boinc_37481feb417ec442, slot#9)
2025-11-27 08:02:45 (8420): Removing network bandwidth throttle group from VM.
2025-11-27 08:02:45 (8420): Removing VM from VirtualBox.
2025-11-27 08:02:51 (8420): called boinc_finish(0)

</stderr_txt>
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