Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:02:19 (3665462): wrapper (7.7.26015): starting
10:02:19 (3665462): wrapper: running run_atlas (--nthreads 4)
[2025-11-28 10:02:19] Arguments: --nthreads 4
[2025-11-28 10:02:19] Threads: 4
[2025-11-28 10:02:19] Checking for CVMFS
[2025-11-28 10:02:19] No cvmfs_config command found, will try listing directly
[2025-11-28 10:02:19] CVMFS is ok
[2025-11-28 10:02:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 10:02:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 10:02:19] Further information can be found at the LHC@home message board.
[2025-11-28 10:02:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 10:02:19] Checking for apptainer binary...
[2025-11-28 10:02:19] which: no apptainer in ((null))
[2025-11-28 10:02:19] apptainer is not installed, using version from CVMFS
[2025-11-28 10:02:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 10:02:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-28 10:02:19] apptainer works
[2025-11-28 10:02:19] Set ATHENA_PROC_NUMBER=4
[2025-11-28 10:02:19] Set ATHENA_CORE_NUMBER=4
[2025-11-28 10:02:19] Starting ATLAS job with PandaID=6895559861
[2025-11-28 10:02:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:02:31 (366498): wrapper (7.7.26015): starting
20:02:31 (366498): wrapper: running run_atlas (--nthreads 4)
[2025-11-28 20:02:31] Arguments: --nthreads 4
[2025-11-28 20:02:31] Threads: 4
[2025-11-28 20:02:31] This job has been restarted, cleaning up previous attempt
[2025-11-28 20:02:31] Checking for CVMFS
[2025-11-28 20:02:31] No cvmfs_config command found, will try listing directly
[2025-11-28 20:02:31] CVMFS is ok
[2025-11-28 20:02:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 20:02:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 20:02:31] Further information can be found at the LHC@home message board.
[2025-11-28 20:02:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 20:02:31] Checking for apptainer binary...
[2025-11-28 20:02:31] which: no apptainer in ((null))
[2025-11-28 20:02:31] apptainer is not installed, using version from CVMFS
[2025-11-28 20:02:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 20:02:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-28 20:02:31] apptainer works
[2025-11-28 20:02:31] Set ATHENA_PROC_NUMBER=4
[2025-11-28 20:02:31] Set ATHENA_CORE_NUMBER=4
[2025-11-28 20:02:31] Starting ATLAS job with PandaID=6895559861
[2025-11-28 20:02:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 11:33:43]  *** The last 200 lines of the pilot log: ***
[2025-11-29 11:33:43] 2025-11-29 10:32:28,711 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 11:33:43] 2025-11-29 10:32:28,769 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2690.589429687499
[2025-11-29 11:33:43] 2025-11-29 10:32:28,801 | INFO     | using path: /scratch/boinc/var/slot120/slots/0/PanDA_Pilot-6895559861/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 11:33:43] 2025-11-29 10:32:28,801 | INFO     | extracted standard info from prmon json
[2025-11-29 11:33:43] 2025-11-29 10:32:28,802 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 11:33:43] 2025-11-29 10:32:28,802 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 11:33:43] 2025-11-29 10:32:28,816 | INFO     | fitting pss+swap vs Time
[2025-11-29 11:33:43] 2025-11-29 10:32:28,817 | INFO     | sum of square deviations: 236764448552.5
[2025-11-29 11:33:43] 2025-11-29 10:32:28,838 | INFO     | sum of deviations: 786293507286.5001
[2025-11-29 11:33:43] 2025-11-29 10:32:28,838 | INFO     | mean x: 1764384446.5
[2025-11-29 11:33:43] 2025-11-29 10:32:28,838 | INFO     | mean y: 2281143.6684901533
[2025-11-29 11:33:43] 2025-11-29 10:32:28,838 | INFO     | intersect: -5857230464.268758
[2025-11-29 11:33:43] 2025-11-29 10:32:28,839 | INFO     | chi2: 4.1776963900161315
[2025-11-29 11:33:43] 2025-11-29 10:32:28,840 | INFO     | sum of square deviations: 232900031910.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,861 | INFO     | sum of deviations: 972285759959.0001
[2025-11-29 11:33:43] 2025-11-29 10:32:28,862 | INFO     | mean x: 1764384294.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,862 | INFO     | mean y: 2288479.704070407
[2025-11-29 11:33:43] 2025-11-29 10:32:28,862 | INFO     | intersect: -7363471456.363402
[2025-11-29 11:33:43] 2025-11-29 10:32:28,863 | INFO     | chi2: 2.05874924017307
[2025-11-29 11:33:43] 2025-11-29 10:32:28,863 | INFO     | current chi2=2.05874924017307 (change=50.72046774167042 %)
[2025-11-29 11:33:43] 2025-11-29 10:32:28,864 | INFO     | sum of square deviations: 229077895130.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,884 | INFO     | sum of deviations: 955097544800.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,884 | INFO     | mean x: 1764384141.5
[2025-11-29 11:33:43] 2025-11-29 10:32:28,884 | INFO     | mean y: 2287793.9159292034
[2025-11-29 11:33:43] 2025-11-29 10:32:28,884 | INFO     | intersect: -7353982703.830659
[2025-11-29 11:33:43] 2025-11-29 10:32:28,885 | INFO     | chi2: 2.0585457272733763
[2025-11-29 11:33:43] 2025-11-29 10:32:28,885 | INFO     | current chi2=2.0585457272733763 (change=0.009885268964406384 %)
[2025-11-29 11:33:43] 2025-11-29 10:32:28,885 | INFO     | right removable region: 903
[2025-11-29 11:33:43] 2025-11-29 10:32:28,886 | INFO     | sum of square deviations: 232900031910.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,906 | INFO     | sum of deviations: 614474103133.0002
[2025-11-29 11:33:43] 2025-11-29 10:32:28,907 | INFO     | mean x: 1764384599.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,907 | INFO     | mean y: 2287911.4323432343
[2025-11-29 11:33:43] 2025-11-29 10:32:28,907 | INFO     | intersect: -4652793649.36006
[2025-11-29 11:33:43] 2025-11-29 10:32:28,908 | INFO     | chi2: 2.220003802695171
[2025-11-29 11:33:43] 2025-11-29 10:32:28,908 | INFO     | current chi2=2.220003802695171 (change=46.860575890566366 %)
[2025-11-29 11:33:43] 2025-11-29 10:32:28,909 | INFO     | sum of square deviations: 229077895130.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,928 | INFO     | sum of deviations: 597982761063.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,929 | INFO     | mean x: 1764384751.5
[2025-11-29 11:33:43] 2025-11-29 10:32:28,929 | INFO     | mean y: 2288568.6681415928
[2025-11-29 11:33:43] 2025-11-29 10:32:28,929 | INFO     | intersect: -4603444623.880532
[2025-11-29 11:33:43] 2025-11-29 10:32:28,930 | INFO     | chi2: 2.216756843240837
[2025-11-29 11:33:43] 2025-11-29 10:32:28,930 | INFO     | current chi2=2.216756843240837 (change=0.14625918434878935 %)
[2025-11-29 11:33:43] 2025-11-29 10:32:28,930 | INFO     | left removable region: 20
[2025-11-29 11:33:43] 2025-11-29 10:32:28,931 | INFO     | sum of square deviations: 213481368282.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,948 | INFO     | sum of deviations: 723758140793.9996
[2025-11-29 11:33:43] 2025-11-29 10:32:28,948 | INFO     | mean x: 1764384721.0
[2025-11-29 11:33:43] 2025-11-29 10:32:28,948 | INFO     | mean y: 2296913.0226500565
[2025-11-29 11:33:43] 2025-11-29 10:32:28,948 | INFO     | intersect: -5979432619.596103
[2025-11-29 11:33:43] 2025-11-29 10:32:28,949 | INFO     | chi2: 0.06957482217712638
[2025-11-29 11:33:43] 2025-11-29 10:32:28,949 | INFO     | current memory leak: 3.39 B/s (using 883 data points, chi2=0.07)
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | could have reported an average CPU frequency of 2693 MHz (34 samples)
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | ..............................
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | . Timing measurements:
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | . get job = 0 s
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | . initial setup = 1 s
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | . payload setup = 9 s
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | . stage-in = 0 s
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | . payload execution = 55736 s
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | . stage-out = 2 s
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | . log creation = 0 s
[2025-11-29 11:33:43] 2025-11-29 10:32:28,951 | INFO     | ..............................
[2025-11-29 11:33:43] 2025-11-29 10:32:29,044 | INFO     | 
[2025-11-29 11:33:43] 2025-11-29 10:32:29,044 | INFO     | job summary report
[2025-11-29 11:33:43] 2025-11-29 10:32:29,044 | INFO     | --------------------------------------------------
[2025-11-29 11:33:43] 2025-11-29 10:32:29,044 | INFO     | PanDA job id: 6895559861
[2025-11-29 11:33:43] 2025-11-29 10:32:29,044 | INFO     | task id: 47556149
[2025-11-29 11:33:43] 2025-11-29 10:32:29,044 | INFO     | errors: (none)
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | pilot state: finished 
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | transexitcode: 0
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | exeerrorcode: 0
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | exeerrordiag: 
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | exitcode: 0
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | exitmsg: OK
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | cpuconsumptiontime: 220953 s
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | nevents: 1000
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | neventsw: 0
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | pid: 379551
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | pgrp: 379551
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | corecount: 4
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | event service: False
[2025-11-29 11:33:43] 2025-11-29 10:32:29,045 | INFO     | sizes: {0: 2284105, 1: 2284304, 7: 2284566, 11: 2284594, 55749: 2337525, 55753: 2346543, 55755: 2346727, 55765: 2346973}
[2025-11-29 11:33:43] 2025-11-29 10:32:29,046 | INFO     | --------------------------------------------------
[2025-11-29 11:33:43] 2025-11-29 10:32:29,046 | INFO     | 
[2025-11-29 11:33:43] 2025-11-29 10:32:29,046 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/0
[2025-11-29 11:33:43] 2025-11-29 10:32:29,071 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,072 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,072 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,072 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,072 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,072 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,072 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,072 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,073 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,073 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,073 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,073 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,073 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,073 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,073 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,073 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,073 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,074 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 11:33:43] 2025-11-29 10:32:29,074 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,074 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 11:33:43] 2025-11-29 10:32:29,074 | INFO     | job 6895559861 has completed (purged errors)
[2025-11-29 11:33:43] 2025-11-29 10:32:29,074 | INFO     | overall cleanup function is called
[2025-11-29 11:33:43] 2025-11-29 10:32:29,554 | INFO     | PID=372198 has CPU usage=21.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 11:33:43] 2025-11-29 10:32:29,554 | INFO     | .. there are 6 such processes running
[2025-11-29 11:33:43] 2025-11-29 10:32:30,095 | INFO     | --- collectZombieJob: --- 10, [379551]
[2025-11-29 11:33:43] 2025-11-29 10:32:30,095 | INFO     | zombie collector waiting for pid 379551
[2025-11-29 11:33:43] 2025-11-29 10:32:30,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 11:33:43] 2025-11-29 10:32:30,095 | INFO     | collected zombie processes
[2025-11-29 11:33:43] 2025-11-29 10:32:30,095 | INFO     | will attempt to kill all subprocesses of pid=379551
[2025-11-29 11:33:43] 2025-11-29 10:32:30,894 | INFO     | process IDs to be killed: [379551] (in reverse order)
[2025-11-29 11:33:43] 2025-11-29 10:32:31,146 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 11:33:43] 2025-11-29 10:32:31,146 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 11:33:43] 2025-11-29 10:32:31,179 | INFO     | did not find any defunct processes belonging to 379551
[2025-11-29 11:33:43] 2025-11-29 10:32:31,211 | INFO     | did not find any defunct processes belonging to 379551
[2025-11-29 11:33:43] 2025-11-29 10:32:31,212 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 11:33:43] 2025-11-29 10:32:31,212 | INFO     | ready for new job
[2025-11-29 11:33:43] 2025-11-29 10:32:31,212 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 11:33:43] 2025-11-29 10:32:31,219 | INFO     | ***************************************
[2025-11-29 11:33:43] 2025-11-29 10:32:31,221 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 11:33:43] 2025-11-29 10:32:31,221 | INFO     | ***************************************
[2025-11-29 11:33:43] 2025-11-29 10:32:31,221 | INFO     | 
[2025-11-29 11:33:43] 2025-11-29 10:32:31,230 | INFO     | architecture information:
[2025-11-29 11:33:43] 2025-11-29 10:32:31,230 | INFO     | executing command: cat /etc/os-release
[2025-11-29 11:33:43] 2025-11-29 10:32:31,251 | INFO     | cat /etc/os-release:
[2025-11-29 11:33:43] NAME="CentOS Linux"
[2025-11-29 11:33:43] VERSION="7 (Core)"
[2025-11-29 11:33:43] ID="centos"
[2025-11-29 11:33:43] ID_LIKE="rhel fedora"
[2025-11-29 11:33:43] VERSION_ID="7"
[2025-11-29 11:33:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 11:33:43] ANSI_COLOR="0;31"
[2025-11-29 11:33:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 11:33:43] HOME_URL="https://www.centos.org/"
[2025-11-29 11:33:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 11:33:43] 
[2025-11-29 11:33:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 11:33:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 11:33:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 11:33:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 11:33:43] 
[2025-11-29 11:33:43] 2025-11-29 10:32:31,251 | INFO     | ***************************************
[2025-11-29 11:33:43] 2025-11-29 10:32:31,755 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/0
[2025-11-29 11:33:43] 2025-11-29 10:32:31,776 | INFO     | sufficient remaining disk space (3265555070976 B)
[2025-11-29 11:33:43] 2025-11-29 10:32:31,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 11:33:43] 2025-11-29 10:32:31,777 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 11:33:43] 2025-11-29 10:32:31,777 | INFO     | update_server=False
[2025-11-29 11:33:43] 2025-11-29 10:32:31,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 11:33:43] 2025-11-29 10:32:31,953 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 11:33:43] 2025-11-29 10:32:32,291 | INFO     | all data control threads have been joined
[2025-11-29 11:33:43] 2025-11-29 10:32:32,599 | INFO     | all job control threads have been joined
[2025-11-29 11:33:43] 2025-11-29 10:32:32,640 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 11:33:43] 2025-11-29 10:32:32,640 | INFO     | aborting loop
[2025-11-29 11:33:43] 2025-11-29 10:32:32,701 | INFO     | all payload control threads have been joined
[2025-11-29 11:33:43] 2025-11-29 10:32:32,782 | INFO     | [job] retrieve thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:32,918 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,291 | INFO     | [data] control thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,353 | INFO     | [payload] failed_post thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,418 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,418 | INFO     | [job] validate thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,459 | INFO     | [payload] validate_post thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,522 | INFO     | [data] copytool_in thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,604 | INFO     | [job] control thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,645 | INFO     | [job] job monitor thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,706 | INFO     | [payload] control thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,752 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:33,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 11:33:43] 2025-11-29 10:32:33,959 | INFO     | [data] copytool_out thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:34,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 11:33:43] 2025-11-29 10:32:34,235 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:35,058 | INFO     | [job] queue monitor thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:37,962 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 11:33:43] 2025-11-29 10:32:44,743 [wrapper] supervise_pilot (15 min periods counter: 63)
[2025-11-29 11:33:43] 2025-11-29 10:33:02,470 | INFO     | PID=372198 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 11:33:43] 2025-11-29 10:33:02,473 | INFO     | .. there are 6 such processes running
[2025-11-29 11:33:43] 2025-11-29 10:33:02,474 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 11:33:43] 2025-11-29 10:33:02,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 11:33:43] 2025-11-29 10:33:02,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 11:33:43] 2025-11-29 10:33:15,709 | INFO     | [monitor] cgroup control has ended
[2025-11-29 11:33:43] 2025-11-29 10:33:16,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22929341949760)>', '<ExcThread(monitor, started 22929102305024)>']
[2025-11-29 11:33:43] 2025-11-29 10:33:16,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 11:33:43] 2025-11-29 10:33:16,539 | INFO     | [monitor] control thread has ended
[2025-11-29 11:33:43] 2025-11-29 10:33:21,261 | INFO     | all workflow threads have been joined
[2025-11-29 11:33:43] 2025-11-29 10:33:21,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 11:33:43] 2025-11-29 10:33:21,261 | INFO     | traces error code: 0
[2025-11-29 11:33:43] 2025-11-29 10:33:21,261 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 11:33:43] 2025-11-29 10:33:21,400 [wrapper] ==== pilot stdout END ====
[2025-11-29 11:33:43] 2025-11-29 10:33:21,404 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 11:33:43] 2025-11-29 10:33:21,412 [wrapper] pilotpid: 372198
[2025-11-29 11:33:43] 2025-11-29 10:33:21,415 [wrapper] Pilot exit status: 0
[2025-11-29 11:33:43] 2025-11-29 10:33:21,430 [wrapper] pandaids: 6895559861 6895559861
[2025-11-29 11:33:43] 2025-11-29 10:33:21,608 [wrapper] cleanup supervisor_pilot 1705649 372199
[2025-11-29 11:33:43] 2025-11-29 10:33:21,612 [wrapper] Test setup, not cleaning
[2025-11-29 11:33:43] 2025-11-29 10:33:21,615 [wrapper] apfmon messages muted
[2025-11-29 11:33:43] 2025-11-29 10:33:21,619 [wrapper] ==== wrapper stdout END ====
[2025-11-29 11:33:43] 2025-11-29 10:33:21,622 [wrapper] ==== wrapper stderr END ====
[2025-11-29 11:33:43]  *** Error codes and diagnostics ***
[2025-11-29 11:33:43]     "exeErrorCode": 0,
[2025-11-29 11:33:43]     "exeErrorDiag": "",
[2025-11-29 11:33:43]     "pilotErrorCode": 0,
[2025-11-29 11:33:43]     "pilotErrorDiag": "",
[2025-11-29 11:33:43]  *** Listing of results directory ***
[2025-11-29 11:33:43] total 1744704
[2025-11-29 11:33:43] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc    576529 Nov 24 11:13 pilot3.tar.gz
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc      5112 Nov 24 11:55 queuedata.json
[2025-11-29 11:33:43] -rwx------ 1 boinc boinc     36292 Nov 24 11:59 runpilot2-wrapper.sh
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc       100 Nov 28 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 11:33:43] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 10:02 run_atlas
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc       105 Nov 28 10:02 job.xml
[2025-11-29 11:33:43] -rw-r--r-- 3 boinc boinc 412801464 Nov 28 10:02 EVNT.47483658._001317.pool.root.1
[2025-11-29 11:33:43] -rw-r--r-- 3 boinc boinc 412801464 Nov 28 10:02 ATLAS.root_0
[2025-11-29 11:33:43] -rw-r--r-- 2 boinc boinc     15847 Nov 28 10:02 start_atlas.sh
[2025-11-29 11:33:43] drwxrwx--x 2 boinc boinc      4096 Nov 28 10:02 shared
[2025-11-29 11:33:43] -rw-r--r-- 2 boinc boinc    590112 Nov 28 10:02 input.tar.gz
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc         0 Nov 28 10:02 boinc_lockfile
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc      2785 Nov 28 20:02 pandaJob.out
[2025-11-29 11:33:43] -rw------- 1 boinc boinc    991818 Nov 28 20:02 agis_schedconf.cvmfs.json
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc      6695 Nov 28 20:03 init_data.xml
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc       532 Nov 29 11:26 boinc_task_state.xml
[2025-11-29 11:33:43] -rw------- 1 boinc boinc 938350658 Nov 29 11:31 HITS.47556149._003036.pool.root.1
[2025-11-29 11:33:43] -rw------- 1 boinc boinc      1044 Nov 29 11:32 memory_monitor_summary.json
[2025-11-29 11:33:43] -rw------- 1 boinc boinc   1516240 Nov 29 11:32 agis_ddmendpoints.agis.ALL.json
[2025-11-29 11:33:43] -rw------- 1 boinc boinc   1655969 Nov 29 11:32 log.47556149._003036.job.log.tgz.1
[2025-11-29 11:33:43] -rw------- 1 boinc boinc      8591 Nov 29 11:32 heartbeat.json
[2025-11-29 11:33:43] -rw------- 1 boinc boinc        97 Nov 29 11:33 pilot_heartbeat.json
[2025-11-29 11:33:43] -rw------- 1 boinc boinc      4834 Nov 29 11:33 pilotlog.txt
[2025-11-29 11:33:43] -rw------- 1 boinc boinc   7692256 Nov 29 11:33 log.47556149._003036.job.log.1
[2025-11-29 11:33:43] -rw------- 1 boinc boinc       353 Nov 29 11:33 output.list
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc       620 Nov 29 11:33 runtime_log
[2025-11-29 11:33:43] -rw------- 1 boinc boinc   9369600 Nov 29 11:33 result.tar.gz
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc      9300 Nov 29 11:33 runtime_log.err
[2025-11-29 11:33:43] -rw------- 1 boinc boinc       795 Nov 29 11:33 V5yNDmySjh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5cLKDmFsgUPo.diag
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc        28 Nov 29 11:33 wrapper_checkpoint.txt
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc      8192 Nov 29 11:33 boinc_mmap_file
[2025-11-29 11:33:43] -rw-r--r-- 1 boinc boinc     23013 Nov 29 11:33 stderr.txt
[2025-11-29 11:33:43] HITS file was successfully produced:
[2025-11-29 11:33:43] -rw------- 1 boinc boinc 938350658 Nov 29 11:31 shared/HITS.pool.root.1
[2025-11-29 11:33:43]  *** Contents of shared directory: ***
[2025-11-29 11:33:43] total 1329244
[2025-11-29 11:33:43] -rw-r--r-- 3 boinc boinc 412801464 Nov 28 10:02 ATLAS.root_0
[2025-11-29 11:33:43] -rw-r--r-- 2 boinc boinc     15847 Nov 28 10:02 start_atlas.sh
[2025-11-29 11:33:43] -rw-r--r-- 2 boinc boinc    590112 Nov 28 10:02 input.tar.gz
[2025-11-29 11:33:43] -rw------- 1 boinc boinc 938350658 Nov 29 11:31 HITS.pool.root.1
[2025-11-29 11:33:43] -rw------- 1 boinc boinc   9369600 Nov 29 11:33 result.tar.gz
11:33:44 (366498): run_atlas exited; CPU time 223756.422163
11:33:44 (366498): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN