Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:25:14 (23751): wrapper (7.7.26015): starting
04:25:14 (23751): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 04:25:14] Arguments: --nthreads 8
[2025-11-25 04:25:14] Threads: 8
[2025-11-25 04:25:14] Checking for CVMFS
[2025-11-25 04:25:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 04:25:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 04:25:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 04:25:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 04:25:14] 2.11.2.0 2954 71321 84200 153277 3 81 17381756 20275200 1 130560 0 21309960 99.943 2992765 29680 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 04:25:14] CVMFS is ok
[2025-11-25 04:25:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 04:25:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 04:25:14] Further information can be found at the LHC@home message board.
[2025-11-25 04:25:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 04:25:14] Checking for apptainer binary...
[2025-11-25 04:25:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 04:25:14] Running /usr/bin/apptainer --version
[2025-11-25 04:25:14] apptainer version 1.3.2-1.el7
[2025-11-25 04:25:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 04:25:16] c-115-12.aglt2.org
[2025-11-25 04:25:16] apptainer works
[2025-11-25 04:25:16] Set ATHENA_PROC_NUMBER=8
[2025-11-25 04:25:16] Set ATHENA_CORE_NUMBER=8
[2025-11-25 04:25:16] Starting ATLAS job with PandaID=6895617439
[2025-11-25 04:25:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:54:10]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:54:10] 2025-11-25 20:53:35,311 | INFO     | time since job start (41282s) is within the limit (172800.0s)
[2025-11-25 15:54:10] 2025-11-25 20:53:36,434 | INFO     | monitor loop #3015: job 0:6895617439 is in state 'finished'
[2025-11-25 15:54:10] 2025-11-25 20:53:36,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,278 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 15:54:10] 2025-11-25 20:53:37,281 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-25 15:54:10] 2025-11-25 20:53:37,282 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895617439/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,282 | INFO     | extracted standard info from prmon json
[2025-11-25 15:54:10] 2025-11-25 20:53:37,282 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 15:54:10] 2025-11-25 20:53:37,283 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 15:54:10] 2025-11-25 20:53:37,295 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:54:10] 2025-11-25 20:53:37,295 | INFO     | sum of square deviations: 96214907805.15218
[2025-11-25 15:54:10] 2025-11-25 20:53:37,305 | INFO     | sum of deviations: 635115629445.0974
[2025-11-25 15:54:10] 2025-11-25 20:53:37,305 | INFO     | mean x: 1764083382.633678
[2025-11-25 15:54:10] 2025-11-25 20:53:37,305 | INFO     | mean y: 3115558.153618907
[2025-11-25 15:54:10] 2025-11-25 20:53:37,305 | INFO     | intersect: -11641617607.563028
[2025-11-25 15:54:10] 2025-11-25 20:53:37,306 | INFO     | chi2: 6.025257993004001
[2025-11-25 15:54:10] 2025-11-25 20:53:37,306 | INFO     | sum of square deviations: 94098943158.12921
[2025-11-25 15:54:10] 2025-11-25 20:53:37,315 | INFO     | sum of deviations: 882570378911.0543
[2025-11-25 15:54:10] 2025-11-25 20:53:37,315 | INFO     | mean x: 1764083230.138393
[2025-11-25 15:54:10] 2025-11-25 20:53:37,315 | INFO     | mean y: 3133384.494047619
[2025-11-25 15:54:10] 2025-11-25 20:53:37,315 | INFO     | intersect: -16542510515.432953
[2025-11-25 15:54:10] 2025-11-25 20:53:37,316 | INFO     | chi2: 2.8488298345284147
[2025-11-25 15:54:10] 2025-11-25 20:53:37,316 | INFO     | current chi2=2.8488298345284147 (change=52.71854188092485 %)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,317 | INFO     | sum of square deviations: 92014234911.07649
[2025-11-25 15:54:10] 2025-11-25 20:53:37,318 | INFO     | time since job start (41284s) is within the limit (172800.0s)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,329 | INFO     | sum of deviations: 942116474707.423
[2025-11-25 15:54:10] 2025-11-25 20:53:37,329 | INFO     | mean x: 1764083077.6431785
[2025-11-25 15:54:10] 2025-11-25 20:53:37,329 | INFO     | mean y: 3137728.026986507
[2025-11-25 15:54:10] 2025-11-25 20:53:37,329 | INFO     | intersect: -18058977680.5982
[2025-11-25 15:54:10] 2025-11-25 20:53:37,330 | INFO     | chi2: 2.515216921834665
[2025-11-25 15:54:10] 2025-11-25 20:53:37,330 | INFO     | current chi2=2.515216921834665 (change=11.710524393218966 %)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,330 | INFO     | right removable region: 666
[2025-11-25 15:54:10] 2025-11-25 20:53:37,331 | INFO     | sum of square deviations: 94098681468.12921
[2025-11-25 15:54:10] 2025-11-25 20:53:37,340 | INFO     | sum of deviations: 430805287137.84314
[2025-11-25 15:54:10] 2025-11-25 20:53:37,340 | INFO     | mean x: 1764083535.138393
[2025-11-25 15:54:10] 2025-11-25 20:53:37,340 | INFO     | mean y: 3130253.9479166665
[2025-11-25 15:54:10] 2025-11-25 20:53:37,340 | INFO     | intersect: -8073247672.217152
[2025-11-25 15:54:10] 2025-11-25 20:53:37,341 | INFO     | chi2: 3.6507113022174935
[2025-11-25 15:54:10] 2025-11-25 20:53:37,341 | INFO     | current chi2=3.6507113022174935 (change=39.409875785296194 %)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,341 | INFO     | sum of square deviations: 92013793515.64319
[2025-11-25 15:54:10] 2025-11-25 20:53:37,350 | INFO     | sum of deviations: 390212021787.34656
[2025-11-25 15:54:10] 2025-11-25 20:53:37,350 | INFO     | mean x: 1764083687.6401799
[2025-11-25 15:54:10] 2025-11-25 20:53:37,350 | INFO     | mean y: 3133221.1139430283
[2025-11-25 15:54:10] 2025-11-25 20:53:37,350 | INFO     | intersect: -7477991467.426628
[2025-11-25 15:54:10] 2025-11-25 20:53:37,351 | INFO     | chi2: 3.607466236393953
[2025-11-25 15:54:10] 2025-11-25 20:53:37,351 | INFO     | current chi2=3.607466236393953 (change=1.184565478986874 %)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,351 | INFO     | left removable region: 20
[2025-11-25 15:54:10] 2025-11-25 20:53:37,352 | INFO     | sum of square deviations: 83593927367.02942
[2025-11-25 15:54:10] 2025-11-25 20:53:37,360 | INFO     | sum of deviations: 646626973905.3231
[2025-11-25 15:54:10] 2025-11-25 20:53:37,360 | INFO     | mean x: 1764083657.1470587
[2025-11-25 15:54:10] 2025-11-25 20:53:37,360 | INFO     | mean y: 3159462.1439628485
[2025-11-25 15:54:10] 2025-11-25 20:53:37,360 | INFO     | intersect: -13642617364.783148
[2025-11-25 15:54:10] 2025-11-25 20:53:37,361 | INFO     | chi2: 0.055546211466159824
[2025-11-25 15:54:10] 2025-11-25 20:53:37,361 | INFO     | current memory leak: 7.74 B/s (using 646 data points, chi2=0.06)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,362 | INFO     | could have reported an average CPU frequency of 2415 MHz (26 samples)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,362 | INFO     | ..............................
[2025-11-25 15:54:10] 2025-11-25 20:53:37,362 | INFO     | . Timing measurements:
[2025-11-25 15:54:10] 2025-11-25 20:53:37,362 | INFO     | . get job = 0 s
[2025-11-25 15:54:10] 2025-11-25 20:53:37,363 | INFO     | . initial setup = 2 s
[2025-11-25 15:54:10] 2025-11-25 20:53:37,363 | INFO     | . payload setup = 8 s
[2025-11-25 15:54:10] 2025-11-25 20:53:37,363 | INFO     | . stage-in = 0 s
[2025-11-25 15:54:10] 2025-11-25 20:53:37,363 | INFO     | . payload execution = 41243 s
[2025-11-25 15:54:10] 2025-11-25 20:53:37,363 | INFO     | . stage-out = 3 s
[2025-11-25 15:54:10] 2025-11-25 20:53:37,363 | INFO     | . log creation = 0 s
[2025-11-25 15:54:10] 2025-11-25 20:53:37,363 | INFO     | ..............................
[2025-11-25 15:54:10] 2025-11-25 20:53:37,776 | INFO     | 
[2025-11-25 15:54:10] 2025-11-25 20:53:37,776 | INFO     | job summary report
[2025-11-25 15:54:10] 2025-11-25 20:53:37,776 | INFO     | --------------------------------------------------
[2025-11-25 15:54:10] 2025-11-25 20:53:37,777 | INFO     | PanDA job id: 6895617439
[2025-11-25 15:54:10] 2025-11-25 20:53:37,777 | INFO     | task id: 47556149
[2025-11-25 15:54:10] 2025-11-25 20:53:37,777 | INFO     | errors: (none)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,777 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:54:10] 2025-11-25 20:53:37,777 | INFO     | pilot state: finished 
[2025-11-25 15:54:10] 2025-11-25 20:53:37,778 | INFO     | transexitcode: 0
[2025-11-25 15:54:10] 2025-11-25 20:53:37,778 | INFO     | exeerrorcode: 0
[2025-11-25 15:54:10] 2025-11-25 20:53:37,778 | INFO     | exeerrordiag: 
[2025-11-25 15:54:10] 2025-11-25 20:53:37,778 | INFO     | exitcode: 0
[2025-11-25 15:54:10] 2025-11-25 20:53:37,778 | INFO     | exitmsg: OK
[2025-11-25 15:54:10] 2025-11-25 20:53:37,778 | INFO     | cpuconsumptiontime: 321762 s
[2025-11-25 15:54:10] 2025-11-25 20:53:37,779 | INFO     | nevents: 1000
[2025-11-25 15:54:10] 2025-11-25 20:53:37,779 | INFO     | neventsw: 0
[2025-11-25 15:54:10] 2025-11-25 20:53:37,779 | INFO     | pid: 1366
[2025-11-25 15:54:10] 2025-11-25 20:53:37,779 | INFO     | pgrp: 1366
[2025-11-25 15:54:10] 2025-11-25 20:53:37,779 | INFO     | corecount: 8
[2025-11-25 15:54:10] 2025-11-25 20:53:37,779 | INFO     | event service: False
[2025-11-25 15:54:10] 2025-11-25 20:53:37,780 | INFO     | sizes: {0: 2284264, 6: 2284526, 11: 2284554, 41255: 2328567, 41259: 2337617, 41268: 2337807}
[2025-11-25 15:54:10] 2025-11-25 20:53:37,780 | INFO     | --------------------------------------------------
[2025-11-25 15:54:10] 2025-11-25 20:53:37,780 | INFO     | 
[2025-11-25 15:54:10] 2025-11-25 20:53:37,780 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 15:54:10] 2025-11-25 20:53:37,811 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,812 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,812 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,812 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,813 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,813 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,813 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,813 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,813 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,813 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,814 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,814 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,814 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,814 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,814 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,815 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,815 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,815 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,815 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:54:10] 2025-11-25 20:53:37,816 | INFO     | job 6895617439 has completed (purged errors)
[2025-11-25 15:54:10] 2025-11-25 20:53:37,816 | INFO     | overall cleanup function is called
[2025-11-25 15:54:10] 2025-11-25 20:53:38,831 | INFO     | --- collectZombieJob: --- 10, [1366]
[2025-11-25 15:54:10] 2025-11-25 20:53:38,831 | INFO     | zombie collector waiting for pid 1366
[2025-11-25 15:54:10] 2025-11-25 20:53:38,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:54:10] 2025-11-25 20:53:38,832 | INFO     | collected zombie processes
[2025-11-25 15:54:10] 2025-11-25 20:53:38,832 | INFO     | will attempt to kill all subprocesses of pid=1366
[2025-11-25 15:54:10] 2025-11-25 20:53:38,916 | INFO     | process IDs to be killed: [1366] (in reverse order)
[2025-11-25 15:54:10] 2025-11-25 20:53:38,974 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:54:10] 2025-11-25 20:53:38,975 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:54:10] 2025-11-25 20:53:38,979 | INFO     | did not find any defunct processes belonging to 1366
[2025-11-25 15:54:10] 2025-11-25 20:53:38,982 | INFO     | did not find any defunct processes belonging to 1366
[2025-11-25 15:54:10] 2025-11-25 20:53:38,985 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:54:10] 2025-11-25 20:53:38,985 | INFO     | ready for new job
[2025-11-25 15:54:10] 2025-11-25 20:53:38,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:54:10] 2025-11-25 20:53:38,989 | INFO     | ***************************************
[2025-11-25 15:54:10] 2025-11-25 20:53:38,989 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:54:10] 2025-11-25 20:53:38,989 | INFO     | ***************************************
[2025-11-25 15:54:10] 2025-11-25 20:53:38,989 | INFO     | 
[2025-11-25 15:54:10] 2025-11-25 20:53:38,990 | INFO     | architecture information:
[2025-11-25 15:54:10] 2025-11-25 20:53:38,990 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:54:10] 2025-11-25 20:53:39,008 | INFO     | cat /etc/os-release:
[2025-11-25 15:54:10] NAME="CentOS Linux"
[2025-11-25 15:54:10] VERSION="7 (Core)"
[2025-11-25 15:54:10] ID="centos"
[2025-11-25 15:54:10] ID_LIKE="rhel fedora"
[2025-11-25 15:54:10] VERSION_ID="7"
[2025-11-25 15:54:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:54:10] ANSI_COLOR="0;31"
[2025-11-25 15:54:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:54:10] HOME_URL="https://www.centos.org/"
[2025-11-25 15:54:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:54:10] 
[2025-11-25 15:54:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:54:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:54:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:54:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:54:10] 
[2025-11-25 15:54:10] 2025-11-25 20:53:39,009 | INFO     | ***************************************
[2025-11-25 15:54:10] 2025-11-25 20:53:39,513 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 15:54:10] 2025-11-25 20:53:39,535 | INFO     | sufficient remaining disk space (17593008128 B)
[2025-11-25 15:54:10] 2025-11-25 20:53:39,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:54:10] 2025-11-25 20:53:39,536 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:54:10] 2025-11-25 20:53:39,536 | INFO     | update_server=False
[2025-11-25 15:54:10] 2025-11-25 20:53:39,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:54:10] 2025-11-25 20:53:39,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:54:10] 2025-11-25 20:53:39,538 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:54:10] 2025-11-25 20:53:39,824 | INFO     | all job control threads have been joined
[2025-11-25 15:54:10] 2025-11-25 20:53:39,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:54:10] 2025-11-25 20:53:39,949 | INFO     | aborting loop
[2025-11-25 15:54:10] 2025-11-25 20:53:40,071 | INFO     | all payload control threads have been joined
[2025-11-25 15:54:10] 2025-11-25 20:53:40,343 | INFO     | all data control threads have been joined
[2025-11-25 15:54:10] 2025-11-25 20:53:40,542 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:40,559 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:40,563 | INFO     | [job] validate thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:40,600 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:40,600 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:40,692 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:40,695 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:40,830 | INFO     | [job] control thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:40,954 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:41,076 | INFO     | [payload] control thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:41,211 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:41,294 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:41,347 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:54:10] 2025-11-25 20:53:41,348 | INFO     | [data] control thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:41,544 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:42,464 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:54:10] 2025-11-25 20:53:43,469 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:43,544 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:54:10] 2025-11-25 20:53:44,080 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140458865944384)>', '<ExcThread(monitor, started 140457770215168)>']
[2025-11-25 15:54:10] 2025-11-25 20:53:49,107 | INFO     | all workflow threads have been joined
[2025-11-25 15:54:10] 2025-11-25 20:53:49,108 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:54:10] 2025-11-25 20:53:49,109 | INFO     | traces error code: 0
[2025-11-25 15:54:10] 2025-11-25 20:53:49,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:54:10] 2025-11-25 20:54:10,460 | INFO     | PID=27422 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 15:54:10] 2025-11-25 20:54:10,461 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:54:10] 2025-11-25 20:54:10,461 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:54:10] 2025-11-25 20:54:10,461 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:54:10] 2025-11-25 20:54:10,462 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:54:10] 2025-11-25 20:54:10,462 | INFO     | [monitor] control thread has ended
[2025-11-25 15:54:10] 2025-11-25 20:54:10,579 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:54:10] 2025-11-25 20:54:10,584 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:54:10] 2025-11-25 20:54:10,588 [wrapper] pilotpid: 27422
[2025-11-25 15:54:10] 2025-11-25 20:54:10,593 [wrapper] Pilot exit status: 0
[2025-11-25 15:54:10] 2025-11-25 20:54:10,610 [wrapper] pandaids: 6895617439
[2025-11-25 15:54:10] 2025-11-25 20:54:10,650 [wrapper] cleanup supervisor_pilot 31584 27423
[2025-11-25 15:54:10] 2025-11-25 20:54:10,656 [wrapper] Test setup, not cleaning
[2025-11-25 15:54:10] 2025-11-25 20:54:10,661 [wrapper] apfmon messages muted
[2025-11-25 15:54:10] 2025-11-25 20:54:10,666 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:54:10] 2025-11-25 20:54:10,671 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:54:10]  *** Error codes and diagnostics ***
[2025-11-25 15:54:10]     "exeErrorCode": 0,
[2025-11-25 15:54:10]     "exeErrorDiag": "",
[2025-11-25 15:54:10]     "pilotErrorCode": 0,
[2025-11-25 15:54:10]     "pilotErrorDiag": "",
[2025-11-25 15:54:10]  *** Listing of results directory ***
[2025-11-25 15:54:10] total 1328576
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 06:12 queuedata.json
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 06:12 pilot3.tar.gz
[2025-11-25 15:54:10] -rwx------ 1 boincer umatlas     36292 Nov 24 06:13 runpilot2-wrapper.sh
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas       100 Nov 25 04:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:54:10] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 04:25 run_atlas
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas       105 Nov 25 04:25 job.xml
[2025-11-25 15:54:10] -rw-r--r-- 2 boincer umatlas 411573067 Nov 25 04:25 EVNT.47483658._001320.pool.root.1
[2025-11-25 15:54:10] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 04:25 start_atlas.sh
[2025-11-25 15:54:10] drwxrwx--x 2 boincer umatlas      4096 Nov 25 04:25 shared
[2025-11-25 15:54:10] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 04:25 input.tar.gz
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas         0 Nov 25 04:25 boinc_lockfile
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 04:25 pandaJob.out
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas        57 Nov 25 04:25 setup.sh.local
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas    991894 Nov 25 04:25 agis_schedconf.cvmfs.json
[2025-11-25 15:54:10] drwx------ 5 boincer umatlas      4096 Nov 25 04:25 pilot3
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas       533 Nov 25 15:43 boinc_task_state.xml
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas      5913 Nov 25 15:48 init_data.xml
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas 929754568 Nov 25 15:52 HITS.47556149._003067.pool.root.1
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas      1061 Nov 25 15:53 memory_monitor_summary.json
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas   1516240 Nov 25 15:53 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas   1940140 Nov 25 15:53 log.47556149._003067.job.log.tgz.1
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas      8658 Nov 25 15:53 heartbeat.json
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 15:53 boinc_mmap_file
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas        29 Nov 25 15:53 wrapper_checkpoint.txt
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas        95 Nov 25 15:54 pilot_heartbeat.json
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas       745 Nov 25 15:54 pilotlog.txt
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas   5666631 Nov 25 15:54 log.47556149._003067.job.log.1
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas       353 Nov 25 15:54 output.list
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas       620 Nov 25 15:54 runtime_log
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas   7628800 Nov 25 15:54 result.tar.gz
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas       668 Nov 25 15:54 wtjMDm0gjh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJdLKDmfIw3Mo.diag
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 15:54 runtime_log.err
[2025-11-25 15:54:10] -rw-r--r-- 1 boincer umatlas     21272 Nov 25 15:54 stderr.txt
[2025-11-25 15:54:10] HITS file was successfully produced:
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas 929754568 Nov 25 15:52 shared/HITS.pool.root.1
[2025-11-25 15:54:10]  *** Contents of shared directory: ***
[2025-11-25 15:54:10] total 1317948
[2025-11-25 15:54:10] -rw-r--r-- 2 boincer umatlas 411573067 Nov 25 04:25 ATLAS.root_0
[2025-11-25 15:54:10] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 04:25 start_atlas.sh
[2025-11-25 15:54:10] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 04:25 input.tar.gz
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas 929754568 Nov 25 15:52 HITS.pool.root.1
[2025-11-25 15:54:10] -rw------- 1 boincer umatlas   7628800 Nov 25 15:54 result.tar.gz
15:54:12 (23751): run_atlas exited; CPU time 319693.382683
15:54:12 (23751): called boinc_finish(0)

</stderr_txt>
]]>

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