Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:33:01 (181209): wrapper (7.7.26015): starting
11:33:01 (181209): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 11:33:01] Arguments: --nthreads 3
[2025-11-25 11:33:01] Threads: 3
[2025-11-25 11:33:01] Checking for CVMFS
[2025-11-25 11:33:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:33:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:33:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:33:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:33:01] 2.9.2.0 4187037 47 59640 153279 0 88 35150973 36864001 0 130560 0 563479 99.997 4042 20414 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 11:33:01] CVMFS is ok
[2025-11-25 11:33:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:33:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:33:01] Further information can be found at the LHC@home message board.
[2025-11-25 11:33:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:33:01] Checking for apptainer binary...
[2025-11-25 11:33:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:33:01] Running /usr/bin/apptainer --version
[2025-11-25 11:33:01] apptainer version 1.4.1-1.1
[2025-11-25 11:33:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:33:01] thA335
[2025-11-25 11:33:01] apptainer works
[2025-11-25 11:33:01] Set ATHENA_PROC_NUMBER=3
[2025-11-25 11:33:01] Set ATHENA_CORE_NUMBER=3
[2025-11-25 11:33:01] Starting ATLAS job with PandaID=6895559472
[2025-11-25 11:33:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:37:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:37:20] 2025-11-25 10:36:31,949 | INFO     | update_server=False
[2025-11-25 11:37:20] 2025-11-25 10:36:31,949 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:37:20] 2025-11-25 10:36:31,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:37:20] 2025-11-25 10:36:31,949 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:37:20] 2025-11-25 10:36:31,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:37:20] 2025-11-25 10:36:31,954 | INFO     | all job control threads have been joined
[2025-11-25 11:37:20] 2025-11-25 10:36:32,618 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:37:20] 2025-11-25 10:36:32,618 | INFO     | aborting loop
[2025-11-25 11:37:20] 2025-11-25 10:36:32,644 | INFO     | all data control threads have been joined
[2025-11-25 11:37:20] 2025-11-25 10:36:32,667 | INFO     | all payload control threads have been joined
[2025-11-25 11:37:20] 2025-11-25 10:36:32,954 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:32,955 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:32,960 | INFO     | [job] control thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,189 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,480 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,547 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,624 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,650 | INFO     | [data] control thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,673 | INFO     | [payload] control thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,682 | INFO     | [job] validate thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,770 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,822 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,955 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:33,968 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:34,023 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:36:35,956 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:37:20] 2025-11-25 10:37:02,781 | INFO     | PID=184946 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 11:37:20] 2025-11-25 10:37:02,781 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:37:20] 2025-11-25 10:37:02,781 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:37:20] 2025-11-25 10:37:02,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:37:20] 2025-11-25 10:37:13,968 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:37:20] 2025-11-25 10:37:15,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219058919232)>', '<ExcThread(monitor, started 140218686478080)>']
[2025-11-25 11:37:20] 2025-11-25 10:37:15,850 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:37:20] 2025-11-25 10:37:15,851 | INFO     | [monitor] control thread has ended
[2025-11-25 11:37:20] 2025-11-25 10:37:20,532 | INFO     | all workflow threads have been joined
[2025-11-25 11:37:20] 2025-11-25 10:37:20,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:37:20] 2025-11-25 10:37:20,533 | INFO     | traces error code: 0
[2025-11-25 11:37:20] 2025-11-25 10:37:20,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:37:20] 2025-11-25 10:37:20,581 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:37:20] 2025-11-25 10:37:20,584 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:37:20] 2025-11-25 10:37:20,587 [wrapper] pilotpid: 184946
[2025-11-25 11:37:20] 2025-11-25 10:37:20,590 [wrapper] Pilot exit status: 0
[2025-11-25 11:37:20] 2025-11-25 10:37:20,597 [wrapper] pandaids: 6895559472
[2025-11-25 11:37:20] 2025-11-25 10:37:20,615 [wrapper] cleanup supervisor_pilot  184952 184947
[2025-11-25 11:37:20] 2025-11-25 10:37:20,617 [wrapper] Test setup, not cleaning
[2025-11-25 11:37:20] 2025-11-25 10:37:20,620 [wrapper] apfmon messages muted
[2025-11-25 11:37:20] 2025-11-25 10:37:20,623 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:37:20] 2025-11-25 10:37:20,625 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:37:20]  *** Error codes and diagnostics ***
[2025-11-25 11:37:20]     "exeErrorCode": 65,
[2025-11-25 11:37:20]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 11:37:20]     "pilotErrorCode": 1305,
[2025-11-25 11:37:20]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 11:37:20]  *** Listing of results directory ***
[2025-11-25 11:37:20] total 403380
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc    576529 Nov 24 11:13 pilot3.tar.gz
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc      5112 Nov 24 11:36 queuedata.json
[2025-11-25 11:37:20] -rwx------ 1 boinc boinc     36292 Nov 24 11:38 runpilot2-wrapper.sh
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc       100 Nov 25 11:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:37:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 11:33 run_atlas
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc       105 Nov 25 11:33 job.xml
[2025-11-25 11:37:20] -rw-r--r-- 2 boinc boinc 408858900 Nov 25 11:33 EVNT.47483658._001309.pool.root.1
[2025-11-25 11:37:20] -rw-r--r-- 2 boinc boinc    590104 Nov 25 11:33 input.tar.gz
[2025-11-25 11:37:20] -rw-r--r-- 2 boinc boinc     15847 Nov 25 11:33 start_atlas.sh
[2025-11-25 11:37:20] drwxrwx--x 2 boinc boinc      4096 Nov 25 11:33 shared
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc         0 Nov 25 11:33 boinc_setup_complete
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc      6196 Nov 25 11:33 init_data.xml
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc         0 Nov 25 11:33 boinc_lockfile
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc      2786 Nov 25 11:33 pandaJob.out
[2025-11-25 11:37:20] -rw------- 1 boinc boinc    991894 Nov 25 11:33 agis_schedconf.cvmfs.json
[2025-11-25 11:37:20] -rw------- 1 boinc boinc   1516240 Nov 25 11:33 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:37:20] drwx------ 5 boinc boinc      4096 Nov 25 11:33 pilot3
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc       522 Nov 25 11:34 boinc_task_state.xml
[2025-11-25 11:37:20] -rw------- 1 boinc boinc       946 Nov 25 11:34 memory_monitor_summary.json
[2025-11-25 11:37:20] -rw------- 1 boinc boinc     55848 Nov 25 11:34 log.47556149._002959.job.log.tgz.1
[2025-11-25 11:37:20] -rw------- 1 boinc boinc        95 Nov 25 11:36 pilot_heartbeat.json
[2025-11-25 11:37:20] -rw------- 1 boinc boinc      8410 Nov 25 11:36 heartbeat.json
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc      8192 Nov 25 11:37 boinc_mmap_file
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc        22 Nov 25 11:37 wrapper_checkpoint.txt
[2025-11-25 11:37:20] -rw------- 1 boinc boinc      4751 Nov 25 11:37 pilotlog.txt
[2025-11-25 11:37:20] -rw------- 1 boinc boinc     93847 Nov 25 11:37 log.47556149._002959.job.log.1
[2025-11-25 11:37:20] -rw------- 1 boinc boinc       186 Nov 25 11:37 output.list
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc       620 Nov 25 11:37 runtime_log
[2025-11-25 11:37:20] -rw------- 1 boinc boinc    174080 Nov 25 11:37 result.tar.gz
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc      8744 Nov 25 11:37 runtime_log.err
[2025-11-25 11:37:20] -rw------- 1 boinc boinc       649 Nov 25 11:37 2RFNDmr8ih8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3bLKDmAumQGm.diag
[2025-11-25 11:37:20] -rw-r--r-- 1 boinc boinc      7783 Nov 25 11:37 stderr.txt
[2025-11-25 11:37:20] No HITS result produced
[2025-11-25 11:37:20]  *** Contents of shared directory: ***
[2025-11-25 11:37:20] total 400052
[2025-11-25 11:37:20] -rw-r--r-- 2 boinc boinc 408858900 Nov 25 11:33 ATLAS.root_0
[2025-11-25 11:37:20] -rw-r--r-- 2 boinc boinc    590104 Nov 25 11:33 input.tar.gz
[2025-11-25 11:37:20] -rw-r--r-- 2 boinc boinc     15847 Nov 25 11:33 start_atlas.sh
[2025-11-25 11:37:20] -rw------- 1 boinc boinc    174080 Nov 25 11:37 result.tar.gz
11:37:22 (181209): run_atlas exited; CPU time 32.199563
11:37:22 (181209): called boinc_finish(0)

</stderr_txt>
]]>

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