Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:53:59 (35206): wrapper (7.7.26015): starting
10:53:59 (35206): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 10:53:59] Arguments: --nthreads 3
[2025-11-25 10:53:59] Threads: 3
[2025-11-25 10:53:59] Checking for CVMFS
[2025-11-25 10:53:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:53:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:53:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:54:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:54:00] 2.9.2.0 4187037 8 48536 153277 3 88 35140210 36864000 0 130560 0 125237 100.000 1 10 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 10:54:00] CVMFS is ok
[2025-11-25 10:54:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:54:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:54:00] Further information can be found at the LHC@home message board.
[2025-11-25 10:54:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:54:00] Checking for apptainer binary...
[2025-11-25 10:54:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:54:00] Running /usr/bin/apptainer --version
[2025-11-25 10:54:00] apptainer version 1.4.1-1.1
[2025-11-25 10:54:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:54:00] thA335
[2025-11-25 10:54:00] apptainer works
[2025-11-25 10:54:00] Set ATHENA_PROC_NUMBER=3
[2025-11-25 10:54:00] Set ATHENA_CORE_NUMBER=3
[2025-11-25 10:54:00] Starting ATLAS job with PandaID=6895559652
[2025-11-25 10:54:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:58:18]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:58:18] 2025-11-25 09:57:30,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 10:58:18] 2025-11-25 09:57:30,003 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 10:58:18] 2025-11-25 09:57:30,003 | INFO     | update_server=False
[2025-11-25 10:58:18] 2025-11-25 09:57:30,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 10:58:18] 2025-11-25 09:57:30,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:58:18] 2025-11-25 09:57:30,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:58:18] 2025-11-25 09:57:30,003 | INFO     | aborting loop
[2025-11-25 10:58:18] 2025-11-25 09:57:30,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:58:18] 2025-11-25 09:57:30,928 | INFO     | all job control threads have been joined
[2025-11-25 10:58:18] 2025-11-25 09:57:31,009 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:31,010 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:31,010 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:31,025 | INFO     | all data control threads have been joined
[2025-11-25 10:58:18] 2025-11-25 09:57:31,054 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:31,311 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:31,425 | INFO     | all payload control threads have been joined
[2025-11-25 10:58:18] 2025-11-25 09:57:31,781 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:31,934 | INFO     | [job] control thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:31,989 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:32,019 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:32,031 | INFO     | [data] control thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:32,345 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:32,421 | INFO     | [job] validate thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:32,429 | INFO     | [payload] control thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:32,495 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:32,804 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:57:33,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:58:18] 2025-11-25 09:57:37,134 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:58:18] 2025-11-25 09:58:00,016 | INFO     | PID=38929 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 10:58:18] 2025-11-25 09:58:00,017 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:58:18] 2025-11-25 09:58:00,017 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:58:18] 2025-11-25 09:58:00,017 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:58:18] 2025-11-25 09:58:11,155 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:58:18] 2025-11-25 09:58:12,943 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139728149956416)>', '<ExcThread(monitor, started 139727785137920)>']
[2025-11-25 10:58:18] 2025-11-25 09:58:13,086 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:58:18] 2025-11-25 09:58:13,087 | INFO     | [monitor] control thread has ended
[2025-11-25 10:58:18] 2025-11-25 09:58:17,951 | INFO     | all workflow threads have been joined
[2025-11-25 10:58:18] 2025-11-25 09:58:17,951 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:58:18] 2025-11-25 09:58:17,952 | INFO     | traces error code: 0
[2025-11-25 10:58:18] 2025-11-25 09:58:17,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:58:18] 2025-11-25 09:58:17,999 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:58:18] 2025-11-25 09:58:18,003 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:58:18] 2025-11-25 09:58:18,006 [wrapper] pilotpid: 38929
[2025-11-25 10:58:18] 2025-11-25 09:58:18,009 [wrapper] Pilot exit status: 0
[2025-11-25 10:58:18] 2025-11-25 09:58:18,016 [wrapper] pandaids: 6895559652
[2025-11-25 10:58:18] 2025-11-25 09:58:18,033 [wrapper] cleanup supervisor_pilot   38935 38930
[2025-11-25 10:58:18] 2025-11-25 09:58:18,036 [wrapper] Test setup, not cleaning
[2025-11-25 10:58:18] 2025-11-25 09:58:18,039 [wrapper] apfmon messages muted
[2025-11-25 10:58:18] 2025-11-25 09:58:18,041 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:58:18] 2025-11-25 09:58:18,044 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:58:18]  *** Error codes and diagnostics ***
[2025-11-25 10:58:18]     "exeErrorCode": 65,
[2025-11-25 10:58:18]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 10:58:18]     "pilotErrorCode": 1305,
[2025-11-25 10:58:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 10:58:18]  *** Listing of results directory ***
[2025-11-25 10:58:18] total 404344
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc    576529 Nov 24 11:13 pilot3.tar.gz
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc      5112 Nov 24 11:42 queuedata.json
[2025-11-25 10:58:18] -rwx------ 1 boinc boinc     36292 Nov 24 11:45 runpilot2-wrapper.sh
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc       100 Nov 25 10:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:58:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 10:53 run_atlas
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc       105 Nov 25 10:53 job.xml
[2025-11-25 10:58:18] -rw-r--r-- 2 boinc boinc 409859773 Nov 25 10:53 EVNT.47483658._001310.pool.root.1
[2025-11-25 10:58:18] -rw-r--r-- 2 boinc boinc    590107 Nov 25 10:53 input.tar.gz
[2025-11-25 10:58:18] -rw-r--r-- 2 boinc boinc     15847 Nov 25 10:53 start_atlas.sh
[2025-11-25 10:58:18] drwxrwx--x 2 boinc boinc      4096 Nov 25 10:53 shared
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc         0 Nov 25 10:53 boinc_setup_complete
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc      6196 Nov 25 10:53 init_data.xml
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc         0 Nov 25 10:53 boinc_lockfile
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc      2785 Nov 25 10:54 pandaJob.out
[2025-11-25 10:58:18] -rw------- 1 boinc boinc    991894 Nov 25 10:54 agis_schedconf.cvmfs.json
[2025-11-25 10:58:18] -rw------- 1 boinc boinc   1516240 Nov 25 10:54 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:58:18] drwx------ 5 boinc boinc      4096 Nov 25 10:54 pilot3
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc       523 Nov 25 10:55 boinc_task_state.xml
[2025-11-25 10:58:18] -rw------- 1 boinc boinc       965 Nov 25 10:55 memory_monitor_summary.json
[2025-11-25 10:58:18] -rw------- 1 boinc boinc     55673 Nov 25 10:55 log.47556149._002969.job.log.tgz.1
[2025-11-25 10:58:18] -rw------- 1 boinc boinc        95 Nov 25 10:57 pilot_heartbeat.json
[2025-11-25 10:58:18] -rw------- 1 boinc boinc      8404 Nov 25 10:57 heartbeat.json
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc      8192 Nov 25 10:58 boinc_mmap_file
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc        23 Nov 25 10:58 wrapper_checkpoint.txt
[2025-11-25 10:58:18] -rw------- 1 boinc boinc      4750 Nov 25 10:58 pilotlog.txt
[2025-11-25 10:58:18] -rw------- 1 boinc boinc     93659 Nov 25 10:58 log.47556149._002969.job.log.1
[2025-11-25 10:58:18] -rw------- 1 boinc boinc       186 Nov 25 10:58 output.list
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc       620 Nov 25 10:58 runtime_log
[2025-11-25 10:58:18] -rw------- 1 boinc boinc    163840 Nov 25 10:58 result.tar.gz
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc      8744 Nov 25 10:58 runtime_log.err
[2025-11-25 10:58:18] -rw------- 1 boinc boinc       648 Nov 25 10:58 35OKDmnFjh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmX1IKDmCWdXgn.diag
[2025-11-25 10:58:18] -rw-r--r-- 1 boinc boinc      8002 Nov 25 10:58 stderr.txt
[2025-11-25 10:58:18] No HITS result produced
[2025-11-25 10:58:18]  *** Contents of shared directory: ***
[2025-11-25 10:58:18] total 401016
[2025-11-25 10:58:18] -rw-r--r-- 2 boinc boinc 409859773 Nov 25 10:53 ATLAS.root_0
[2025-11-25 10:58:18] -rw-r--r-- 2 boinc boinc    590107 Nov 25 10:53 input.tar.gz
[2025-11-25 10:58:18] -rw-r--r-- 2 boinc boinc     15847 Nov 25 10:53 start_atlas.sh
[2025-11-25 10:58:18] -rw------- 1 boinc boinc    163840 Nov 25 10:58 result.tar.gz
10:58:19 (35206): run_atlas exited; CPU time 32.019429
10:58:19 (35206): called boinc_finish(0)

</stderr_txt>
]]>

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