Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:58:22 (56037): wrapper (7.7.26015): starting
10:58:22 (56037): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 10:58:22] Arguments: --nthreads 3
[2025-11-25 10:58:22] Threads: 3
[2025-11-25 10:58:22] Checking for CVMFS
[2025-11-25 10:58:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:58:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:58:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:58:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:58:23] 2.9.2.0 4187037 13 49936 153277 2 88 35140210 36864000 0 130560 0 187842 100.000 2 20 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 10:58:23] CVMFS is ok
[2025-11-25 10:58:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:58:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:58:23] Further information can be found at the LHC@home message board.
[2025-11-25 10:58:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:58:23] Checking for apptainer binary...
[2025-11-25 10:58:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:58:23] Running /usr/bin/apptainer --version
[2025-11-25 10:58:23] apptainer version 1.4.1-1.1
[2025-11-25 10:58:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:58:23] thA335
[2025-11-25 10:58:23] apptainer works
[2025-11-25 10:58:23] Set ATHENA_PROC_NUMBER=3
[2025-11-25 10:58:23] Set ATHENA_CORE_NUMBER=3
[2025-11-25 10:58:23] Starting ATLAS job with PandaID=6895559641
[2025-11-25 10:58:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:02:42]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:02:42] 2025-11-25 10:01:53,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:02:42] 2025-11-25 10:01:53,588 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:02:42] 2025-11-25 10:01:53,588 | INFO     | update_server=False
[2025-11-25 11:02:42] 2025-11-25 10:01:53,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:02:42] 2025-11-25 10:01:53,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:02:42] 2025-11-25 10:01:53,589 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:02:42] 2025-11-25 10:01:54,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:02:42] 2025-11-25 10:01:54,072 | INFO     | aborting loop
[2025-11-25 11:02:42] 2025-11-25 10:01:54,145 | INFO     | all data control threads have been joined
[2025-11-25 11:02:42] 2025-11-25 10:01:54,198 | INFO     | all payload control threads have been joined
[2025-11-25 11:02:42] 2025-11-25 10:01:54,594 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:54,595 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:54,877 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:54,957 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:55,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:02:42] 2025-11-25 10:01:55,079 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:55,115 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:55,143 | INFO     | [job] validate thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:55,151 | INFO     | [data] control thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:55,165 | INFO     | all job control threads have been joined
[2025-11-25 11:02:42] 2025-11-25 10:01:55,204 | INFO     | [payload] control thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:55,228 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:55,290 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:55,514 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:56,002 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:56,171 | INFO     | [job] control thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:57,045 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:01:57,595 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:02:42] 2025-11-25 10:02:24,456 | INFO     | PID=59769 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 11:02:42] 2025-11-25 10:02:24,456 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:02:42] 2025-11-25 10:02:24,456 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:02:42] 2025-11-25 10:02:24,456 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:02:42] 2025-11-25 10:02:35,420 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:02:42] 2025-11-25 10:02:37,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102598051648)>', '<ExcThread(monitor, started 140102317606656)>']
[2025-11-25 11:02:42] 2025-11-25 10:02:37,524 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:02:42] 2025-11-25 10:02:37,525 | INFO     | [monitor] control thread has ended
[2025-11-25 11:02:42] 2025-11-25 10:02:42,112 | INFO     | all workflow threads have been joined
[2025-11-25 11:02:42] 2025-11-25 10:02:42,113 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:02:42] 2025-11-25 10:02:42,113 | INFO     | traces error code: 0
[2025-11-25 11:02:42] 2025-11-25 10:02:42,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:02:42] 2025-11-25 10:02:42,161 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:02:42] 2025-11-25 10:02:42,164 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:02:42] 2025-11-25 10:02:42,167 [wrapper] pilotpid: 59769
[2025-11-25 11:02:42] 2025-11-25 10:02:42,171 [wrapper] Pilot exit status: 0
[2025-11-25 11:02:42] 2025-11-25 10:02:42,178 [wrapper] pandaids: 6895559641
[2025-11-25 11:02:42] 2025-11-25 10:02:42,195 [wrapper] cleanup supervisor_pilot   59776 59770
[2025-11-25 11:02:42] 2025-11-25 10:02:42,197 [wrapper] Test setup, not cleaning
[2025-11-25 11:02:42] 2025-11-25 10:02:42,200 [wrapper] apfmon messages muted
[2025-11-25 11:02:42] 2025-11-25 10:02:42,203 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:02:42] 2025-11-25 10:02:42,205 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:02:42]  *** Error codes and diagnostics ***
[2025-11-25 11:02:42]     "exeErrorCode": 65,
[2025-11-25 11:02:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 11:02:42]     "pilotErrorCode": 1305,
[2025-11-25 11:02:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 11:02:42]  *** Listing of results directory ***
[2025-11-25 11:02:42] total 403340
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc    576529 Nov 24 11:13 pilot3.tar.gz
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc      5112 Nov 24 11:42 queuedata.json
[2025-11-25 11:02:42] -rwx------ 1 boinc boinc     36292 Nov 24 11:44 runpilot2-wrapper.sh
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc       100 Nov 25 10:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:02:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 10:58 run_atlas
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc       105 Nov 25 10:58 job.xml
[2025-11-25 11:02:42] -rw-r--r-- 2 boinc boinc 408819109 Nov 25 10:58 EVNT.47483658._002035.pool.root.1
[2025-11-25 11:02:42] -rw-r--r-- 2 boinc boinc    590105 Nov 25 10:58 input.tar.gz
[2025-11-25 11:02:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 10:58 start_atlas.sh
[2025-11-25 11:02:42] drwxrwx--x 2 boinc boinc      4096 Nov 25 10:58 shared
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc         0 Nov 25 10:58 boinc_setup_complete
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc      6196 Nov 25 10:58 init_data.xml
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc         0 Nov 25 10:58 boinc_lockfile
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc      2784 Nov 25 10:58 pandaJob.out
[2025-11-25 11:02:42] -rw------- 1 boinc boinc    991894 Nov 25 10:58 agis_schedconf.cvmfs.json
[2025-11-25 11:02:42] -rw------- 1 boinc boinc   1516240 Nov 25 10:58 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:02:42] drwx------ 5 boinc boinc      4096 Nov 25 10:58 pilot3
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc       523 Nov 25 10:59 boinc_task_state.xml
[2025-11-25 11:02:42] -rw------- 1 boinc boinc       959 Nov 25 10:59 memory_monitor_summary.json
[2025-11-25 11:02:42] -rw------- 1 boinc boinc     56166 Nov 25 10:59 log.47556161._000189.job.log.tgz.1
[2025-11-25 11:02:42] -rw------- 1 boinc boinc        95 Nov 25 11:01 pilot_heartbeat.json
[2025-11-25 11:02:42] -rw------- 1 boinc boinc      8403 Nov 25 11:01 heartbeat.json
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc        23 Nov 25 11:02 wrapper_checkpoint.txt
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc      8192 Nov 25 11:02 boinc_mmap_file
[2025-11-25 11:02:42] -rw------- 1 boinc boinc      4750 Nov 25 11:02 pilotlog.txt
[2025-11-25 11:02:42] -rw------- 1 boinc boinc     93664 Nov 25 11:02 log.47556161._000189.job.log.1
[2025-11-25 11:02:42] -rw------- 1 boinc boinc       186 Nov 25 11:02 output.list
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc       620 Nov 25 11:02 runtime_log
[2025-11-25 11:02:42] -rw------- 1 boinc boinc    174080 Nov 25 11:02 result.tar.gz
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc      8744 Nov 25 11:02 runtime_log.err
[2025-11-25 11:02:42] -rw------- 1 boinc boinc       649 Nov 25 11:02 T9TLDm6Ejh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQ1IKDmnp1eEn.diag
[2025-11-25 11:02:42] -rw-r--r-- 1 boinc boinc      8003 Nov 25 11:02 stderr.txt
[2025-11-25 11:02:42] No HITS result produced
[2025-11-25 11:02:42]  *** Contents of shared directory: ***
[2025-11-25 11:02:42] total 400012
[2025-11-25 11:02:42] -rw-r--r-- 2 boinc boinc 408819109 Nov 25 10:58 ATLAS.root_0
[2025-11-25 11:02:42] -rw-r--r-- 2 boinc boinc    590105 Nov 25 10:58 input.tar.gz
[2025-11-25 11:02:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 10:58 start_atlas.sh
[2025-11-25 11:02:42] -rw------- 1 boinc boinc    174080 Nov 25 11:02 result.tar.gz
11:02:43 (56037): run_atlas exited; CPU time 32.004155
11:02:43 (56037): called boinc_finish(0)

</stderr_txt>
]]>

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