Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 05:05:57 (22168): vboxwrapper version 26210
2025-11-25 05:05:57 (22168): BOINC client version: 8.2.7
2025-11-25 05:05:57 (22168): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-11-25 05:05:58 (22168): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 05:05:58 (22168): Create VM. (boinc_76496e300153d638, slot#1)
2025-11-25 05:05:58 (22168): Setting Memory Size for VM. (4300MB)
2025-11-25 05:05:59 (22168): Setting CPU Count for VM. (3)
2025-11-25 05:05:59 (22168): Setting Chipset Options for VM.
2025-11-25 05:05:59 (22168): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 05:05:59 (22168): Setting Boot Options for VM.
2025-11-25 05:06:00 (22168): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 05:06:00 (22168): Enabling VM Network Access.
2025-11-25 05:06:00 (22168): Disabling USB Support for VM.
2025-11-25 05:06:01 (22168): Disabling COM Port Support for VM.
2025-11-25 05:06:01 (22168): Disabling LPT Port Support for VM.
2025-11-25 05:06:01 (22168): Disabling Audio Support for VM.
2025-11-25 05:06:02 (22168): Disabling Clipboard Support for VM.
2025-11-25 05:06:02 (22168): Disabling Drag and Drop Support for VM.
2025-11-25 05:06:02 (22168): Adding storage controller(s) to VM.
2025-11-25 05:06:02 (22168): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 05:06:03 (22168): Adding VirtualBox Guest Additions to VM.
2025-11-25 05:06:03 (22168): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 05:06:03 (22168): forwarding host port 53479 to guest port 80
2025-11-25 05:06:04 (22168): Enabling remote desktop for VM.
2025-11-25 05:06:04 (22168): Enabling shared directory for VM.
2025-11-25 05:06:05 (22168): Starting VM using VBoxManage interface. (boinc_76496e300153d638, slot#1)
2025-11-25 05:06:10 (22168): Successfully started VM. (PID = '26580')
2025-11-25 05:06:10 (22168): Reporting VM Process ID to BOINC.
2025-11-25 05:06:10 (22168): Guest Log: BIOS: VirtualBox 7.2.0
2025-11-25 05:06:10 (22168): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 05:06:10 (22168): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 05:06:10 (22168): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 05:06:10 (22168): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 05:06:10 (22168): Detected: Web Application Enabled (http://localhost:53479)
2025-11-25 05:06:10 (22168): Detected: Remote Desktop Enabled (localhost:53480)
2025-11-25 05:06:10 (22168): Preference change detected
2025-11-25 05:06:10 (22168): Setting CPU throttle for VM. (100%)
2025-11-25 05:06:10 (22168): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 05:06:12 (22168): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 05:06:12 (22168): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 05:06:14 (22168): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 05:06:14 (22168): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 05:06:14 (22168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 05:07:06 (22168): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 05:07:06 (22168): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 05:07:10 (22168): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 05:07:10 (22168): Guest Log: 00:00:00.000105 main     Log opened 2025-11-25T05:07:08.299218000Z
2025-11-25 05:07:10 (22168): Guest Log: 00:00:00.000174 main     OS Product: Linux
2025-11-25 05:07:10 (22168): Guest Log: 00:00:00.000188 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 05:07:10 (22168): Guest Log: 00:00:00.000199 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 05:07:10 (22168): Guest Log: 00:00:00.000210 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 05:07:10 (22168): Guest Log: 00:00:00.000210 main     Process ID: 1292
2025-11-25 05:07:10 (22168): Guest Log: 00:00:00.000211 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 05:07:10 (22168): Guest Log: 00:00:00.000662 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 05:07:10 (22168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 05:07:10 (22168): Guest Log: [INFO] Mounting shared directory
2025-11-25 05:07:10 (22168): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 05:07:13 (22168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 05:07:13 (22168): Guest Log: [INFO] Detected branch: prod
2025-11-25 05:07:13 (22168): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 05:07:13 (22168): Guest Log: Copying input files
2025-11-25 05:07:14 (22168): Guest Log: Copied input files into RunAtlas.
2025-11-25 05:07:14 (22168): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 05:07:14 (22168): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 05:07:14 (22168): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 05:07:14 (22168): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 05:07:20 (22168): Guest Log: 00:00:10.003290 timesync vgsvcTimeSyncWorker: Radical guest time change: 17 962 553 993 000ns (GuestNow=1 764 065 190 855 667 000 ns GuestLast=1 764 047 228 301 674 000 ns fSetTimeLastLoop=true )
2025-11-25 05:07:22 (22168): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 05:07:22 (22168): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 05:07:22 (22168): Guest Log: 2.6.3.0 1569 0 32192 153277 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 05:07:22 (22168): Guest Log: copied the webapp to /var/www
2025-11-25 05:07:22 (22168): Guest Log: ATHENA_PROC_NUMBER=3
2025-11-25 05:07:22 (22168): Guest Log: ATHENA_CORE_NUMBER=3
2025-11-25 05:07:22 (22168): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 05:07:22 (22168): Guest Log:  *** Starting ATLAS job. (PandaID=6895357748 taskID=47556149) ***
2025-11-25 06:46:12 (22168): Status Report: Elapsed Time: '6000.000000'
2025-11-25 06:46:12 (22168): Status Report: CPU Time: '16957.484375'
2025-11-25 08:26:14 (22168): Status Report: Elapsed Time: '12000.000000'
2025-11-25 08:26:14 (22168): Status Report: CPU Time: '34890.625000'
2025-11-25 10:06:17 (22168): Status Report: Elapsed Time: '18000.000000'
2025-11-25 10:06:17 (22168): Status Report: CPU Time: '52826.796875'
2025-11-25 11:46:19 (22168): Status Report: Elapsed Time: '24000.000000'
2025-11-25 11:46:19 (22168): Status Report: CPU Time: '70766.015625'
2025-11-25 13:26:21 (22168): Status Report: Elapsed Time: '30000.000000'
2025-11-25 13:26:21 (22168): Status Report: CPU Time: '88705.656250'
2025-11-25 15:06:24 (22168): Status Report: Elapsed Time: '36000.000000'
2025-11-25 15:06:24 (22168): Status Report: CPU Time: '106645.406250'
2025-11-25 16:46:26 (22168): Status Report: Elapsed Time: '42000.000000'
2025-11-25 16:46:26 (22168): Status Report: CPU Time: '124587.046875'
2025-11-25 18:26:28 (22168): Status Report: Elapsed Time: '48000.000000'
2025-11-25 18:26:28 (22168): Status Report: CPU Time: '142526.734375'
2025-11-25 20:06:31 (22168): Status Report: Elapsed Time: '54000.000000'
2025-11-25 20:06:31 (22168): Status Report: CPU Time: '160450.015625'
2025-11-25 21:46:33 (22168): Status Report: Elapsed Time: '60000.000000'
2025-11-25 21:46:33 (22168): Status Report: CPU Time: '178391.140625'
2025-11-25 23:26:35 (22168): Status Report: Elapsed Time: '66000.000000'
2025-11-25 23:26:35 (22168): Status Report: CPU Time: '196332.093750'
2025-11-26 00:38:10 (22168): Guest Log:  *** Job finished ***
2025-11-26 00:38:10 (22168): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:26,576 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:26,576 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:27,803 | INFO     | [monitor] cgroup control has ended
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:28,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140709434177344)>', '<ExcThread(monitor, started 140708547647232)>']
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:29,639 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:29,639 | INFO     | [monitor] control thread has ended
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,000 | INFO     | all workflow threads have been joined
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,000 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,000 | INFO     | traces error code: 0
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,106 [wrapper] ==== pilot stdout END ====
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,109 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,112 [wrapper] pilotpid: 5943
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,115 [wrapper] Pilot exit status: 0
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,125 [wrapper] pandaids: 6895357748
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,144 [wrapper] cleanup supervisor_pilot  8832 5944
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,149 [wrapper] Test setup, not cleaning
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,152 [wrapper] apfmon messages muted
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,155 [wrapper] ==== wrapper stdout END ====
2025-11-26 00:38:10 (22168): Guest Log: 2025-11-26 05:37:34,158 [wrapper] ==== wrapper stderr END ====
2025-11-26 00:38:10 (22168): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 00:38:10 (22168): Guest Log:     "exeErrorCode": 0,
2025-11-26 00:38:10 (22168): Guest Log:     "exeErrorDiag": "",
2025-11-26 00:38:10 (22168): Guest Log:     "pilotErrorCode": 0,
2025-11-26 00:38:10 (22168): Guest Log:     "pilotErrorDiag": "",
2025-11-26 00:38:10 (22168): Guest Log:  *** Listing of results directory ***
2025-11-26 00:38:10 (22168): Guest Log: total 924612
2025-11-26 00:38:10 (22168): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 12:14 pilot3.tar.gz
2025-11-26 00:38:10 (22168): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 12:15 runpilot2-wrapper.sh
2025-11-26 00:38:10 (22168): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 12:15 queuedata.json
2025-11-26 00:38:10 (22168): Guest Log: -rwxr-xr-x. 1 atlas atlas     10550 Nov 25 10:06 init_data.xml
2025-11-26 00:38:10 (22168): Guest Log: -rwxr-xr-x. 1 atlas atlas    590098 Nov 25 10:06 input.tar.gz
2025-11-26 00:38:10 (22168): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 25 10:06 start_atlas.sh
2025-11-26 00:38:10 (22168): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 10:06 EVNT.47483658._001160.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 00:38:10 (22168): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 25 10:06 pandaJob.out
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas    991894 Nov 25 10:07 agis_schedconf.cvmfs.json
2025-11-26 00:38:10 (22168): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 10:07 pilot3
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas 920753933 Nov 26 05:36 HITS.47556149._001466.pool.root.1
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 05:36 pilot_heartbeat.json
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas      1041 Nov 26 05:36 memory_monitor_summary.json
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 05:36 agis_ddmendpoints.agis.ALL.json
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas   1672466 Nov 26 05:36 log.47556149._001466.job.log.tgz.1
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas      8663 Nov 26 05:36 heartbeat.json
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 26 05:37 pilotlog.txt
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas   9428967 Nov 26 05:37 log.47556149._001466.job.log.1
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 05:37 output.list
2025-11-26 00:38:10 (22168): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 05:37 runtime_log
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas  11120640 Nov 26 05:37 result.tar.gz
2025-11-26 00:38:10 (22168): Guest Log: -rw-r--r--. 1 atlas atlas      8738 Nov 26 05:37 runtime_log.err
2025-11-26 00:38:10 (22168): Guest Log: -rw-------. 1 atlas atlas       658 Nov 26 05:37 Ew5LDm5AOh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGXIKDmITl73m.diag
2025-11-26 00:38:10 (22168): Guest Log: Looking for outputfile HITS.47556149._001466.pool.root.1
2025-11-26 00:38:10 (22168): Guest Log: HITS file was successfully produced
2025-11-26 00:38:11 (22168): Guest Log: -rw-------. 1 atlas atlas 920753933 Nov 26 05:36 /home/atlas/RunAtlas/HITS.47556149._001466.pool.root.1
2025-11-26 00:38:12 (22168): Guest Log: Successfully finished the ATLAS job!
2025-11-26 00:38:12 (22168): Guest Log: Copying the results back to the shared directory!
2025-11-26 00:38:12 (22168): Guest Log:  *** Contents of shared directory: ***
2025-11-26 00:38:12 (22168): Guest Log: total 1310252
2025-11-26 00:38:12 (22168): Guest Log: -rwxrwxrwx. 1 root root 409196145 Nov 25 10:05 ATLAS.root_0
2025-11-26 00:38:12 (22168): Guest Log: -rwxrwxrwx. 1 root root 920753933 Nov 26  2025 HITS.pool.root.1
2025-11-26 00:38:12 (22168): Guest Log: -rwxrwxrwx. 1 root root     10550 Nov 25 10:05 init_data.xml
2025-11-26 00:38:12 (22168): Guest Log: -rwxrwxrwx. 1 root root    590098 Nov 25 10:03 input.tar.gz
2025-11-26 00:38:12 (22168): Guest Log: -rwxrwxrwx. 1 root root  11120640 Nov 26  2025 result.tar.gz
2025-11-26 00:38:12 (22168): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 25 10:03 start_atlas.sh
2025-11-26 00:38:12 (22168): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 00:38:12 (22168): VM Completion File Detected.
2025-11-26 00:38:12 (22168): Powering off VM.
2025-11-26 00:38:13 (22168): Successfully stopped VM.
2025-11-26 00:38:13 (22168): Deregistering VM. (boinc_76496e300153d638, slot#1)
2025-11-26 00:38:13 (22168): Removing network bandwidth throttle group from VM.
2025-11-26 00:38:14 (22168): Removing VM from VirtualBox.
2025-11-26 00:38:19 (22168): called boinc_finish(0)

</stderr_txt>
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