Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:22:55 (14884): wrapper (7.7.26015): starting
04:22:55 (14884): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 04:22:55] Arguments: --nthreads 8
[2025-11-25 04:22:55] Threads: 8
[2025-11-25 04:22:55] Checking for CVMFS
[2025-11-25 04:22:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 04:22:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 04:22:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 04:22:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 04:22:57] 2.13.3.0 22787 28374 233012 153277 1 497 20647109 40960000 48713 16776704 0 415215273 99.756 240966442 48049 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 04:22:57] CVMFS is ok
[2025-11-25 04:22:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 04:22:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 04:22:57] Further information can be found at the LHC@home message board.
[2025-11-25 04:22:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 04:22:57] Checking for apptainer binary...
[2025-11-25 04:22:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 04:22:57] Running /usr/bin/apptainer --version
[2025-11-25 04:22:57] apptainer version 1.4.4-1.el9
[2025-11-25 04:22:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 04:22:57] c8-6-11.aglt2.org
[2025-11-25 04:22:57] apptainer works
[2025-11-25 04:22:57] Set ATHENA_PROC_NUMBER=8
[2025-11-25 04:22:57] Set ATHENA_CORE_NUMBER=8
[2025-11-25 04:22:58] Starting ATLAS job with PandaID=6895339962
[2025-11-25 04:22:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:27:43]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:27:43] 2025-11-25 19:26:39,802 | INFO     | time since job start (36127s) is within the limit (172800.0s)
[2025-11-25 14:27:43] 2025-11-25 19:26:40,477 | INFO     | monitor loop #2222: job 0:6895339962 is in state 'finished'
[2025-11-25 14:27:43] 2025-11-25 19:26:40,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:27:43] 2025-11-25 19:26:41,809 | INFO     | time since job start (36129s) is within the limit (172800.0s)
[2025-11-25 14:27:43] 2025-11-25 19:26:42,983 | INFO     | monitor loop #2223: job 0:6895339962 is in state 'finished'
[2025-11-25 14:27:43] 2025-11-25 19:26:42,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:27:43] 2025-11-25 19:26:43,816 | INFO     | time since job start (36131s) is within the limit (172800.0s)
[2025-11-25 14:27:43] 2025-11-25 19:26:45,491 | INFO     | monitor loop #2224: job 0:6895339962 is in state 'finished'
[2025-11-25 14:27:43] 2025-11-25 19:26:45,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:27:43] 2025-11-25 19:26:45,823 | INFO     | time since job start (36133s) is within the limit (172800.0s)
[2025-11-25 14:27:43] 2025-11-25 19:26:47,830 | INFO     | time since job start (36135s) is within the limit (172800.0s)
[2025-11-25 14:27:43] 2025-11-25 19:26:47,996 | INFO     | monitor loop #2225: job 0:6895339962 is in state 'finished'
[2025-11-25 14:27:43] 2025-11-25 19:26:47,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:27:43] 2025-11-25 19:26:50,540 | INFO     | monitor loop #2226: job 0:6895339962 is in state 'finished'
[2025-11-25 14:27:43] 2025-11-25 19:26:50,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:27:43] 2025-11-25 19:26:52,039 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 14:27:43] 2025-11-25 19:26:52,063 | INFO     | PID=50825 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 14:27:43] 2025-11-25 19:26:52,063 | INFO     | .. there are 68 such processes running
[2025-11-25 14:27:43] 2025-11-25 19:26:52,067 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1193437499987
[2025-11-25 14:27:43] 2025-11-25 19:26:52,096 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895339962/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 14:27:43] 2025-11-25 19:26:52,097 | INFO     | extracted standard info from prmon json
[2025-11-25 14:27:43] 2025-11-25 19:26:52,097 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 14:27:43] 2025-11-25 19:26:52,097 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 14:27:43] 2025-11-25 19:26:52,103 | INFO     | fitting pss+swap vs Time
[2025-11-25 14:27:43] 2025-11-25 19:26:52,103 | INFO     | sum of square deviations: 63360593759.24944
[2025-11-25 14:27:43] 2025-11-25 19:26:52,107 | INFO     | sum of deviations: 80272213342.69164
[2025-11-25 14:27:43] 2025-11-25 19:26:52,108 | INFO     | mean x: 1764080788.9202037
[2025-11-25 14:27:43] 2025-11-25 19:26:52,108 | INFO     | mean y: 2794939.908319185
[2025-11-25 14:27:43] 2025-11-25 19:26:52,108 | INFO     | intersect: -2232137863.594244
[2025-11-25 14:27:43] 2025-11-25 19:26:52,108 | INFO     | chi2: 25.516329860232492
[2025-11-25 14:27:43] 2025-11-25 19:26:52,108 | INFO     | sum of square deviations: 61760803484.979515
[2025-11-25 14:27:43] 2025-11-25 19:26:52,113 | INFO     | sum of deviations: 268720755715.8322
[2025-11-25 14:27:43] 2025-11-25 19:26:52,113 | INFO     | mean x: 1764080636.4280822
[2025-11-25 14:27:43] 2025-11-25 19:26:52,113 | INFO     | mean y: 2812898.412671233
[2025-11-25 14:27:43] 2025-11-25 19:26:52,113 | INFO     | intersect: -7672687662.066764
[2025-11-25 14:27:43] 2025-11-25 19:26:52,113 | INFO     | chi2: 22.011385523205
[2025-11-25 14:27:43] 2025-11-25 19:26:52,113 | INFO     | current chi2=22.011385523205 (change=13.736083348295283 %)
[2025-11-25 14:27:43] 2025-11-25 19:26:52,113 | INFO     | right removable region: 583
[2025-11-25 14:27:43] 2025-11-25 19:26:52,114 | INFO     | sum of square deviations: 61760472864.97951
[2025-11-25 14:27:43] 2025-11-25 19:26:52,118 | INFO     | sum of deviations: -156186830417.37036
[2025-11-25 14:27:43] 2025-11-25 19:26:52,118 | INFO     | mean x: 1764080941.4280822
[2025-11-25 14:27:43] 2025-11-25 19:26:52,118 | INFO     | mean y: 2817471.705479452
[2025-11-25 14:27:43] 2025-11-25 19:26:52,118 | INFO     | intersect: 4464023775.026653
[2025-11-25 14:27:43] 2025-11-25 19:26:52,118 | INFO     | chi2: 21.21370709744895
[2025-11-25 14:27:43] 2025-11-25 19:26:52,118 | INFO     | current chi2=21.21370709744895 (change=16.862232093531727 %)
[2025-11-25 14:27:43] 2025-11-25 19:26:52,118 | INFO     | left removable region: 10
[2025-11-25 14:27:43] 2025-11-25 19:26:52,119 | INFO     | sum of square deviations: 58335891009.32295
[2025-11-25 14:27:43] 2025-11-25 19:26:52,123 | INFO     | sum of deviations: -118349733098.00311
[2025-11-25 14:27:43] 2025-11-25 19:26:52,123 | INFO     | mean x: 1764080910.9458988
[2025-11-25 14:27:43] 2025-11-25 19:26:52,123 | INFO     | mean y: 2858815.8708551484
[2025-11-25 14:27:43] 2025-11-25 19:26:52,123 | INFO     | intersect: 3581761980.9971642
[2025-11-25 14:27:43] 2025-11-25 19:26:52,123 | INFO     | chi2: 14.05661116928001
[2025-11-25 14:27:43] 2025-11-25 19:26:52,123 | INFO     | current memory leak: -2.03 B/s (using 573 data points, chi2=14.06)
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | could have reported an average CPU frequency of 3799 MHz (23 samples)
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | ..............................
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | . Timing measurements:
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | . get job = 0 s
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | . initial setup = 5 s
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | . payload setup = 55 s
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | . stage-in = 0 s
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | . payload execution = 35941 s
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | . stage-out = 8 s
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | . log creation = 4 s
[2025-11-25 14:27:43] 2025-11-25 19:26:52,124 | INFO     | ..............................
[2025-11-25 14:27:43] 2025-11-25 19:26:52,185 | INFO     | 
[2025-11-25 14:27:43] 2025-11-25 19:26:52,185 | INFO     | job summary report
[2025-11-25 14:27:43] 2025-11-25 19:26:52,185 | INFO     | --------------------------------------------------
[2025-11-25 14:27:43] 2025-11-25 19:26:52,185 | INFO     | PanDA job id: 6895339962
[2025-11-25 14:27:43] 2025-11-25 19:26:52,185 | INFO     | task id: 47556137
[2025-11-25 14:27:43] 2025-11-25 19:26:52,185 | INFO     | errors: (none)
[2025-11-25 14:27:43] 2025-11-25 19:26:52,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 14:27:43] 2025-11-25 19:26:52,185 | INFO     | pilot state: finished 
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | transexitcode: 0
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | exeerrorcode: 0
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | exeerrordiag: 
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | exitcode: 0
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | exitmsg: OK
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | cpuconsumptiontime: 140709 s
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | nevents: 1000
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | neventsw: 0
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | pid: 102049
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | pgrp: 102049
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | corecount: 8
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | event service: False
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | sizes: {0: 2284264, 1: 2284264, 11: 2284292, 22: 2284320, 33: 2284348, 36: 2284666, 44: 2284822, 36002: 2324887, 36012: 2333937, 36051: 2334127}
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | --------------------------------------------------
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | 
[2025-11-25 14:27:43] 2025-11-25 19:26:52,186 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-25 14:27:43] 2025-11-25 19:26:52,408 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | job 6895339962 has completed (purged errors)
[2025-11-25 14:27:43] 2025-11-25 19:26:52,409 | INFO     | overall cleanup function is called
[2025-11-25 14:27:43] 2025-11-25 19:26:53,470 | INFO     | --- collectZombieJob: --- 10, [102049]
[2025-11-25 14:27:43] 2025-11-25 19:26:53,470 | INFO     | zombie collector waiting for pid 102049
[2025-11-25 14:27:43] 2025-11-25 19:26:53,470 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 14:27:43] 2025-11-25 19:26:53,470 | INFO     | collected zombie processes
[2025-11-25 14:27:43] 2025-11-25 19:26:53,470 | INFO     | will attempt to kill all subprocesses of pid=102049
[2025-11-25 14:27:43] 2025-11-25 19:26:55,224 | INFO     | process IDs to be killed: [102049] (in reverse order)
[2025-11-25 14:27:43] 2025-11-25 19:26:55,900 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 14:27:43] 2025-11-25 19:26:55,900 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 14:27:43] 2025-11-25 19:26:55,967 | INFO     | did not find any defunct processes belonging to 102049
[2025-11-25 14:27:43] 2025-11-25 19:26:56,033 | INFO     | did not find any defunct processes belonging to 102049
[2025-11-25 14:27:43] 2025-11-25 19:26:56,034 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 14:27:43] 2025-11-25 19:26:56,034 | INFO     | ready for new job
[2025-11-25 14:27:43] 2025-11-25 19:26:56,035 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 14:27:43] 2025-11-25 19:26:56,038 | INFO     | ***************************************
[2025-11-25 14:27:43] 2025-11-25 19:26:56,038 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 14:27:43] 2025-11-25 19:26:56,038 | INFO     | ***************************************
[2025-11-25 14:27:43] 2025-11-25 19:26:56,038 | INFO     | 
[2025-11-25 14:27:43] 2025-11-25 19:26:56,043 | INFO     | architecture information:
[2025-11-25 14:27:43] 2025-11-25 19:26:56,043 | INFO     | executing command: cat /etc/os-release
[2025-11-25 14:27:43] 2025-11-25 19:26:56,092 | INFO     | cat /etc/os-release:
[2025-11-25 14:27:43] NAME="CentOS Linux"
[2025-11-25 14:27:43] VERSION="7 (Core)"
[2025-11-25 14:27:43] ID="centos"
[2025-11-25 14:27:43] ID_LIKE="rhel fedora"
[2025-11-25 14:27:43] VERSION_ID="7"
[2025-11-25 14:27:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 14:27:43] ANSI_COLOR="0;31"
[2025-11-25 14:27:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 14:27:43] HOME_URL="https://www.centos.org/"
[2025-11-25 14:27:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 14:27:43] 
[2025-11-25 14:27:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 14:27:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 14:27:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 14:27:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 14:27:43] 
[2025-11-25 14:27:43] 2025-11-25 19:26:56,093 | INFO     | ***************************************
[2025-11-25 14:27:43] 2025-11-25 19:26:56,596 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-25 14:27:43] 2025-11-25 19:26:56,724 | INFO     | sufficient remaining disk space (157567418368 B)
[2025-11-25 14:27:43] 2025-11-25 19:26:56,724 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 14:27:43] 2025-11-25 19:26:56,724 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 14:27:43] 2025-11-25 19:26:56,724 | INFO     | update_server=False
[2025-11-25 14:27:43] 2025-11-25 19:26:56,724 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:27:43] 2025-11-25 19:26:56,728 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:27:43] 2025-11-25 19:26:56,728 | INFO     | aborting loop
[2025-11-25 14:27:43] 2025-11-25 19:26:57,006 | INFO     | all data control threads have been joined
[2025-11-25 14:27:43] 2025-11-25 19:26:57,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:27:43] 2025-11-25 19:26:57,293 | INFO     | all job control threads have been joined
[2025-11-25 14:27:43] 2025-11-25 19:26:57,732 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:57,735 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:57,784 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:57,792 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:58,015 | INFO     | [data] control thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:58,050 | INFO     | all payload control threads have been joined
[2025-11-25 14:27:43] 2025-11-25 19:26:58,186 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:27:43] 2025-11-25 19:26:58,197 | INFO     | [job] validate thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:58,199 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:58,206 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:58,299 | INFO     | [job] control thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:58,307 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:58,488 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:58,643 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:59,057 | INFO     | [payload] control thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:59,324 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:26:59,776 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:27:43] 2025-11-25 19:27:00,193 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:27:03,805 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:27:43] 2025-11-25 19:27:28,608 | INFO     | PID=50825 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 14:27:43] 2025-11-25 19:27:28,621 | INFO     | .. there are 69 such processes running
[2025-11-25 14:27:43] 2025-11-25 19:27:28,622 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:27:43] 2025-11-25 19:27:28,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:27:43] 2025-11-25 19:27:28,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:27:43] 2025-11-25 19:27:34,470 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:27:43] 2025-11-25 19:27:36,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433781249856)>', '<ExcThread(monitor, started 140432545675008)>']
[2025-11-25 14:27:43] 2025-11-25 19:27:36,669 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:27:43] 2025-11-25 19:27:36,669 | INFO     | [monitor] control thread has ended
[2025-11-25 14:27:43] 2025-11-25 19:27:41,156 | INFO     | all workflow threads have been joined
[2025-11-25 14:27:43] 2025-11-25 19:27:41,156 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:27:43] 2025-11-25 19:27:41,156 | INFO     | traces error code: 0
[2025-11-25 14:27:43] 2025-11-25 19:27:41,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:27:43] 2025-11-25 19:27:41,657 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:27:43] 2025-11-25 19:27:41,669 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:27:43] 2025-11-25 19:27:41,698 [wrapper] pilotpid: 50825
[2025-11-25 14:27:43] 2025-11-25 19:27:41,721 [wrapper] Pilot exit status: 0
[2025-11-25 14:27:43] 2025-11-25 19:27:41,951 [wrapper] pandaids: 6895339962
[2025-11-25 14:27:43] 2025-11-25 19:27:42,859 [wrapper] cleanup supervisor_pilot 2811660 50826
[2025-11-25 14:27:43] 2025-11-25 19:27:42,881 [wrapper] Test setup, not cleaning
[2025-11-25 14:27:43] 2025-11-25 19:27:42,921 [wrapper] apfmon messages muted
[2025-11-25 14:27:43] 2025-11-25 19:27:42,947 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:27:43] 2025-11-25 19:27:42,984 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:27:43]  *** Error codes and diagnostics ***
[2025-11-25 14:27:43]     "exeErrorCode": 0,
[2025-11-25 14:27:43]     "exeErrorDiag": "",
[2025-11-25 14:27:43]     "pilotErrorCode": 0,
[2025-11-25 14:27:43]     "pilotErrorDiag": "",
[2025-11-25 14:27:43]  *** Listing of results directory ***
[2025-11-25 14:27:43] total 1318900
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 07:20 pilot3.tar.gz
[2025-11-25 14:27:43] -rwx------. 1 boincer umatlas     36292 Nov 22 07:22 runpilot2-wrapper.sh
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 07:22 queuedata.json
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas       100 Nov 25 04:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:27:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 04:22 run_atlas
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas       105 Nov 25 04:22 job.xml
[2025-11-25 14:27:43] -rw-r--r--. 2 boincer umatlas 408639391 Nov 25 04:22 EVNT.47483658._000365.pool.root.1
[2025-11-25 14:27:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 04:22 start_atlas.sh
[2025-11-25 14:27:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 04:22 shared
[2025-11-25 14:27:43] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 04:22 input.tar.gz
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas         0 Nov 25 04:22 boinc_lockfile
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 04:22 pandaJob.out
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas        57 Nov 25 04:22 setup.sh.local
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas    991894 Nov 25 04:24 agis_schedconf.cvmfs.json
[2025-11-25 14:27:43] drwx------. 5 boincer umatlas      4096 Nov 25 04:24 pilot3
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas       533 Nov 25 14:01 boinc_task_state.xml
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas      7174 Nov 25 14:22 init_data.xml
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas 925133335 Nov 25 14:24 HITS.47556137._003613.pool.root.1
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas      1070 Nov 25 14:25 memory_monitor_summary.json
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas   1516240 Nov 25 14:26 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas   1818525 Nov 25 14:26 log.47556137._003613.job.log.tgz.1
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas      7917 Nov 25 14:26 heartbeat.json
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas        95 Nov 25 14:27 pilot_heartbeat.json
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas      4823 Nov 25 14:27 pilotlog.txt
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 14:27 boinc_mmap_file
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas        29 Nov 25 14:27 wrapper_checkpoint.txt
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas   4615181 Nov 25 14:27 log.47556137._003613.job.log.1
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas       353 Nov 25 14:27 output.list
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas       620 Nov 25 14:27 runtime_log
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas   6451200 Nov 25 14:27 result.tar.gz
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 14:27 runtime_log.err
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas       659 Nov 25 14:27 6JHKDmSo1g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmP6HKDm0syRYm.diag
[2025-11-25 14:27:43] -rw-r--r--. 1 boincer umatlas     21857 Nov 25 14:27 stderr.txt
[2025-11-25 14:27:43] HITS file was successfully produced:
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas 925133335 Nov 25 14:24 shared/HITS.pool.root.1
[2025-11-25 14:27:43]  *** Contents of shared directory: ***
[2025-11-25 14:27:43] total 1309420
[2025-11-25 14:27:43] -rw-r--r--. 2 boincer umatlas 408639391 Nov 25 04:22 ATLAS.root_0
[2025-11-25 14:27:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 04:22 start_atlas.sh
[2025-11-25 14:27:43] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 04:22 input.tar.gz
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas 925133335 Nov 25 14:24 HITS.pool.root.1
[2025-11-25 14:27:43] -rw-------. 1 boincer umatlas   6451200 Nov 25 14:27 result.tar.gz
14:27:45 (14884): run_atlas exited; CPU time 141470.030594
14:27:45 (14884): called boinc_finish(0)

</stderr_txt>
]]>

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