Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:36:58 (3051506): wrapper (7.7.26015): starting
08:36:58 (3051506): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 08:36:58] Arguments: --nthreads 8
[2025-11-25 08:36:58] Threads: 8
[2025-11-25 08:36:58] Checking for CVMFS
[2025-11-25 08:36:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:36:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:36:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:36:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:36:59] 2.13.2.0 6699 34466 242296 153284 1 554 33663058 40960001 25180 16776704 0 86479946 99.618 84683560 37298 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 08:36:59] CVMFS is ok
[2025-11-25 08:36:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:36:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:36:59] Further information can be found at the LHC@home message board.
[2025-11-25 08:36:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:36:59] Checking for apptainer binary...
[2025-11-25 08:36:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:36:59] Running /usr/bin/apptainer --version
[2025-11-25 08:36:59] apptainer version 1.4.4-1.el9
[2025-11-25 08:36:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:37:00] c-212-4.aglt2.org
[2025-11-25 08:37:00] apptainer works
[2025-11-25 08:37:00] Set ATHENA_PROC_NUMBER=8
[2025-11-25 08:37:00] Set ATHENA_CORE_NUMBER=8
[2025-11-25 08:37:00] Starting ATLAS job with PandaID=6895559321
[2025-11-25 08:37:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:55:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:55:42] 2025-11-26 08:54:55,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:55:42] 2025-11-26 08:54:55,696 | INFO     | time since job start (69447s) is within the limit (172800.0s)
[2025-11-26 03:55:42] 2025-11-26 08:54:57,703 | INFO     | time since job start (69449s) is within the limit (172800.0s)
[2025-11-26 03:55:42] 2025-11-26 08:54:57,931 | INFO     | monitor loop #4220: job 0:6895559321 is in state 'finished'
[2025-11-26 03:55:42] 2025-11-26 08:54:57,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:55:42] 2025-11-26 08:54:59,712 | INFO     | time since job start (69451s) is within the limit (172800.0s)
[2025-11-26 03:55:42] 2025-11-26 08:55:00,436 | INFO     | monitor loop #4221: job 0:6895559321 is in state 'finished'
[2025-11-26 03:55:42] 2025-11-26 08:55:00,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:55:42] 2025-11-26 08:55:01,719 | INFO     | time since job start (69453s) is within the limit (172800.0s)
[2025-11-26 03:55:42] 2025-11-26 08:55:02,948 | INFO     | monitor loop #4222: job 0:6895559321 is in state 'finished'
[2025-11-26 03:55:42] 2025-11-26 08:55:02,948 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:55:42] 2025-11-26 08:55:03,728 | INFO     | time since job start (69455s) is within the limit (172800.0s)
[2025-11-26 03:55:42] 2025-11-26 08:55:04,325 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 03:55:42] 2025-11-26 08:55:04,483 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3254.828177083335
[2025-11-26 03:55:42] 2025-11-26 08:55:04,580 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895559321/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:55:42] 2025-11-26 08:55:04,581 | INFO     | extracted standard info from prmon json
[2025-11-26 03:55:42] 2025-11-26 08:55:04,581 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:55:42] 2025-11-26 08:55:04,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:55:42] 2025-11-26 08:55:04,823 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:55:42] 2025-11-26 08:55:04,824 | INFO     | sum of square deviations: 455863720298.5562
[2025-11-26 03:55:42] 2025-11-26 08:55:05,033 | INFO     | sum of deviations: 1481286382567.4045
[2025-11-26 03:55:42] 2025-11-26 08:55:05,033 | INFO     | mean x: 1764112581.2524188
[2025-11-26 03:55:42] 2025-11-26 08:55:05,033 | INFO     | mean y: 2861985.761653474
[2025-11-26 03:55:42] 2025-11-26 08:55:05,033 | INFO     | intersect: -5729456309.306053
[2025-11-26 03:55:42] 2025-11-26 08:55:05,034 | INFO     | chi2: 18.892602569870427
[2025-11-26 03:55:42] 2025-11-26 08:55:05,035 | INFO     | sum of square deviations: 449877914713.077
[2025-11-26 03:55:42] 2025-11-26 08:55:05,185 | INFO     | sum of deviations: 1941472081449.1045
[2025-11-26 03:55:42] 2025-11-26 08:55:05,186 | INFO     | mean x: 1764112428.7623675
[2025-11-26 03:55:42] 2025-11-26 08:55:05,186 | INFO     | mean y: 2873709.4204947
[2025-11-26 03:55:42] 2025-11-26 08:55:05,186 | INFO     | intersect: -7610247355.132957
[2025-11-26 03:55:42] 2025-11-26 08:55:05,187 | INFO     | chi2: 14.309709280164228
[2025-11-26 03:55:42] 2025-11-26 08:55:05,187 | INFO     | current chi2=14.309709280164228 (change=24.257607033003026 %)
[2025-11-26 03:55:42] 2025-11-26 08:55:05,187 | INFO     | right removable region: 1131
[2025-11-26 03:55:42] 2025-11-26 08:55:05,210 | INFO     | sum of square deviations: 449876352503.0771
[2025-11-26 03:55:42] 2025-11-26 08:55:05,395 | INFO     | sum of deviations: 1046045791559.8168
[2025-11-26 03:55:42] 2025-11-26 08:55:05,396 | INFO     | mean x: 1764112733.7623675
[2025-11-26 03:55:42] 2025-11-26 08:55:05,396 | INFO     | mean y: 2873069.441696113
[2025-11-26 03:55:42] 2025-11-26 08:55:05,396 | INFO     | intersect: -4099015573.3417363
[2025-11-26 03:55:42] 2025-11-26 08:55:05,397 | INFO     | chi2: 15.093842474930812
[2025-11-26 03:55:42] 2025-11-26 08:55:05,397 | INFO     | current chi2=15.093842474930812 (change=20.107129660356097 %)
[2025-11-26 03:55:42] 2025-11-26 08:55:05,397 | INFO     | left removable region: 10
[2025-11-26 03:55:42] 2025-11-26 08:55:05,398 | INFO     | sum of square deviations: 436890889245.35785
[2025-11-26 03:55:42] 2025-11-26 08:55:05,530 | INFO     | monitor loop #4223: job 0:6895559321 is in state 'finished'
[2025-11-26 03:55:42] 2025-11-26 08:55:05,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:55:42] 2025-11-26 08:55:05,566 | INFO     | sum of deviations: 1237311079271.607
[2025-11-26 03:55:42] 2025-11-26 08:55:05,566 | INFO     | mean x: 1764112703.2827833
[2025-11-26 03:55:42] 2025-11-26 08:55:05,566 | INFO     | mean y: 2895458.3577163247
[2025-11-26 03:55:42] 2025-11-26 08:55:05,566 | INFO     | intersect: -4993217407.776548
[2025-11-26 03:55:42] 2025-11-26 08:55:05,567 | INFO     | chi2: 7.642881077019625
[2025-11-26 03:55:42] 2025-11-26 08:55:05,567 | INFO     | current memory leak: 2.83 B/s (using 1121 data points, chi2=7.64)
[2025-11-26 03:55:42] 2025-11-26 08:55:05,568 | INFO     | could have reported an average CPU frequency of 3122 MHz (42 samples)
[2025-11-26 03:55:42] 2025-11-26 08:55:05,569 | INFO     | ..............................
[2025-11-26 03:55:42] 2025-11-26 08:55:05,593 | INFO     | . Timing measurements:
[2025-11-26 03:55:42] 2025-11-26 08:55:05,593 | INFO     | . get job = 0 s
[2025-11-26 03:55:42] 2025-11-26 08:55:05,593 | INFO     | . initial setup = 4 s
[2025-11-26 03:55:42] 2025-11-26 08:55:05,593 | INFO     | . payload setup = 25 s
[2025-11-26 03:55:42] 2025-11-26 08:55:05,593 | INFO     | . stage-in = 0 s
[2025-11-26 03:55:42] 2025-11-26 08:55:05,593 | INFO     | . payload execution = 69321 s
[2025-11-26 03:55:42] 2025-11-26 08:55:05,594 | INFO     | . stage-out = 40 s
[2025-11-26 03:55:42] 2025-11-26 08:55:05,594 | INFO     | . log creation = 3 s
[2025-11-26 03:55:42] 2025-11-26 08:55:05,594 | INFO     | ..............................
[2025-11-26 03:55:42] 2025-11-26 08:55:05,823 | INFO     | time since job start (69457s) is within the limit (172800.0s)
[2025-11-26 03:55:42] 2025-11-26 08:55:06,538 | INFO     | 
[2025-11-26 03:55:42] 2025-11-26 08:55:06,538 | INFO     | job summary report
[2025-11-26 03:55:42] 2025-11-26 08:55:06,538 | INFO     | --------------------------------------------------
[2025-11-26 03:55:42] 2025-11-26 08:55:06,538 | INFO     | PanDA job id: 6895559321
[2025-11-26 03:55:42] 2025-11-26 08:55:06,538 | INFO     | task id: 47556149
[2025-11-26 03:55:42] 2025-11-26 08:55:06,538 | INFO     | errors: (none)
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | pilot state: finished 
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | transexitcode: 0
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | exeerrorcode: 0
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | exeerrordiag: 
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | exitcode: 0
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | exitmsg: OK
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | cpuconsumptiontime: 204828 s
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | nevents: 1000
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | neventsw: 0
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | pid: 3077122
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | pgrp: 3077122
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | corecount: 8
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | event service: False
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 19: 2284633, 23: 2284661, 69352: 2341713, 69353: 2341840, 69394: 2351288, 69420: 2351256}
[2025-11-26 03:55:42] 2025-11-26 08:55:06,539 | INFO     | --------------------------------------------------
[2025-11-26 03:55:42] 2025-11-26 08:55:06,540 | INFO     | 
[2025-11-26 03:55:42] 2025-11-26 08:55:06,540 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 03:55:42] 2025-11-26 08:55:06,761 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,762 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | job 6895559321 has completed (purged errors)
[2025-11-26 03:55:42] 2025-11-26 08:55:06,763 | INFO     | overall cleanup function is called
[2025-11-26 03:55:42] 2025-11-26 08:55:08,269 | INFO     | --- collectZombieJob: --- 10, [3077122]
[2025-11-26 03:55:42] 2025-11-26 08:55:08,269 | INFO     | zombie collector waiting for pid 3077122
[2025-11-26 03:55:42] 2025-11-26 08:55:08,269 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:55:42] 2025-11-26 08:55:08,269 | INFO     | collected zombie processes
[2025-11-26 03:55:42] 2025-11-26 08:55:08,269 | INFO     | will attempt to kill all subprocesses of pid=3077122
[2025-11-26 03:55:42] 2025-11-26 08:55:11,766 | INFO     | process IDs to be killed: [3077122] (in reverse order)
[2025-11-26 03:55:42] 2025-11-26 08:55:12,237 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:55:42] 2025-11-26 08:55:12,238 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:55:42] 2025-11-26 08:55:12,259 | INFO     | did not find any defunct processes belonging to 3077122
[2025-11-26 03:55:42] 2025-11-26 08:55:12,284 | INFO     | did not find any defunct processes belonging to 3077122
[2025-11-26 03:55:42] 2025-11-26 08:55:12,300 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:55:42] 2025-11-26 08:55:12,300 | INFO     | ready for new job
[2025-11-26 03:55:42] 2025-11-26 08:55:12,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:55:42] 2025-11-26 08:55:12,306 | INFO     | ***************************************
[2025-11-26 03:55:42] 2025-11-26 08:55:12,306 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:55:42] 2025-11-26 08:55:12,306 | INFO     | ***************************************
[2025-11-26 03:55:42] 2025-11-26 08:55:12,306 | INFO     | 
[2025-11-26 03:55:42] 2025-11-26 08:55:12,316 | INFO     | architecture information:
[2025-11-26 03:55:42] 2025-11-26 08:55:12,323 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:55:42] 2025-11-26 08:55:12,530 | INFO     | cat /etc/os-release:
[2025-11-26 03:55:42] NAME="CentOS Linux"
[2025-11-26 03:55:42] VERSION="7 (Core)"
[2025-11-26 03:55:42] ID="centos"
[2025-11-26 03:55:42] ID_LIKE="rhel fedora"
[2025-11-26 03:55:42] VERSION_ID="7"
[2025-11-26 03:55:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:55:42] ANSI_COLOR="0;31"
[2025-11-26 03:55:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:55:42] HOME_URL="https://www.centos.org/"
[2025-11-26 03:55:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:55:42] 
[2025-11-26 03:55:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:55:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:55:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:55:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:55:42] 
[2025-11-26 03:55:42] 2025-11-26 08:55:12,530 | INFO     | ***************************************
[2025-11-26 03:55:42] 2025-11-26 08:55:13,036 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 03:55:42] 2025-11-26 08:55:13,268 | INFO     | sufficient remaining disk space (118430367744 B)
[2025-11-26 03:55:42] 2025-11-26 08:55:13,268 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:55:42] 2025-11-26 08:55:13,268 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:55:42] 2025-11-26 08:55:13,268 | INFO     | update_server=False
[2025-11-26 03:55:42] 2025-11-26 08:55:13,268 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:55:42] 2025-11-26 08:55:13,269 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:55:42] 2025-11-26 08:55:13,269 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:55:42] 2025-11-26 08:55:13,271 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 03:55:42] 2025-11-26 08:55:13,271 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 03:55:42] 2025-11-26 08:55:13,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:55:42] 2025-11-26 08:55:13,271 | INFO     | will abort loop
[2025-11-26 03:55:42] 2025-11-26 08:55:13,382 | INFO     | all job control threads have been joined
[2025-11-26 03:55:42] 2025-11-26 08:55:13,915 | INFO     | all data control threads have been joined
[2025-11-26 03:55:42] 2025-11-26 08:55:14,040 | INFO     | all payload control threads have been joined
[2025-11-26 03:55:42] 2025-11-26 08:55:14,274 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:14,288 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:14,388 | INFO     | [job] control thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:14,534 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:14,594 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:14,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:14,745 | INFO     | [job] validate thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:14,921 | INFO     | [data] control thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:15,051 | INFO     | [payload] control thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:15,276 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:15,280 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:15,373 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:15,436 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:15,473 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:15,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:55:42] 2025-11-26 08:55:16,601 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:17,278 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:55:42] 2025-11-26 08:55:29,652 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:55:42] 2025-11-26 08:55:31,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140576700507968)>', '<ExcThread(monitor, started 140576208967424)>']
[2025-11-26 03:55:42] 2025-11-26 08:55:36,404 | INFO     | all workflow threads have been joined
[2025-11-26 03:55:42] 2025-11-26 08:55:36,404 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:55:42] 2025-11-26 08:55:36,404 | INFO     | traces error code: 0
[2025-11-26 03:55:42] 2025-11-26 08:55:36,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:55:42] 2025-11-26 08:55:41,178 | INFO     | PID=3055523 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 03:55:42] 2025-11-26 08:55:41,187 | INFO     | .. there are 28 such processes running
[2025-11-26 03:55:42] 2025-11-26 08:55:41,187 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:55:42] 2025-11-26 08:55:41,187 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:55:42] 2025-11-26 08:55:41,187 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:55:42] 2025-11-26 08:55:41,187 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:55:42] 2025-11-26 08:55:41,187 | INFO     | [monitor] control thread has ended
[2025-11-26 03:55:42] 2025-11-26 08:55:41,578 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:55:42] 2025-11-26 08:55:41,599 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:55:42] 2025-11-26 08:55:41,617 [wrapper] pilotpid: 3055523
[2025-11-26 03:55:42] 2025-11-26 08:55:41,634 [wrapper] Pilot exit status: 0
[2025-11-26 03:55:42] 2025-11-26 08:55:41,778 [wrapper] pandaids: 6895559321
[2025-11-26 03:55:42] 2025-11-26 08:55:42,191 [wrapper] cleanup supervisor_pilot 3187426 3055524
[2025-11-26 03:55:42] 2025-11-26 08:55:42,204 [wrapper] Test setup, not cleaning
[2025-11-26 03:55:42] 2025-11-26 08:55:42,243 [wrapper] apfmon messages muted
[2025-11-26 03:55:42] 2025-11-26 08:55:42,249 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:55:42] 2025-11-26 08:55:42,251 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:55:42]  *** Error codes and diagnostics ***
[2025-11-26 03:55:42]     "exeErrorCode": 0,
[2025-11-26 03:55:42]     "exeErrorDiag": "",
[2025-11-26 03:55:42]     "pilotErrorCode": 0,
[2025-11-26 03:55:42]     "pilotErrorDiag": "",
[2025-11-26 03:55:42]  *** Listing of results directory ***
[2025-11-26 03:55:42] total 1320816
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 05:13 pilot3.tar.gz
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 05:26 queuedata.json
[2025-11-26 03:55:42] -rwx------. 1 boincer umatlas     36292 Nov 24 05:27 runpilot2-wrapper.sh
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas       100 Nov 25 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:55:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 08:36 run_atlas
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas       105 Nov 25 08:36 job.xml
[2025-11-26 03:55:42] -rw-r--r--. 2 boincer umatlas 408430661 Nov 25 08:36 EVNT.47483658._001305.pool.root.1
[2025-11-26 03:55:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 08:36 start_atlas.sh
[2025-11-26 03:55:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 08:36 shared
[2025-11-26 03:55:42] -rw-r--r--. 2 boincer umatlas    590111 Nov 25 08:36 input.tar.gz
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas         0 Nov 25 08:36 boinc_lockfile
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 08:37 pandaJob.out
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas        57 Nov 25 08:37 setup.sh.local
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas    991909 Nov 25 08:37 agis_schedconf.cvmfs.json
[2025-11-26 03:55:42] drwx------. 5 boincer umatlas      4096 Nov 25 08:37 pilot3
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas       533 Nov 26 03:33 boinc_task_state.xml
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 03:49 init_data.xml
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas 917966484 Nov 26 03:49 HITS.47556149._002914.pool.root.1
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas      1075 Nov 26 03:53 memory_monitor_summary.json
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas   1516240 Nov 26 03:54 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas   2263960 Nov 26 03:54 log.47556149._002914.job.log.tgz.1
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas        95 Nov 26 03:55 pilot_heartbeat.json
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas      8636 Nov 26 03:55 heartbeat.json
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 03:55 boinc_mmap_file
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas        29 Nov 26 03:55 wrapper_checkpoint.txt
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas       823 Nov 26 03:55 pilotlog.txt
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas   8837147 Nov 26 03:55 log.47556149._002914.job.log.1
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas       353 Nov 26 03:55 output.list
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas       620 Nov 26 03:55 runtime_log
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas  11120640 Nov 26 03:55 result.tar.gz
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 03:55 runtime_log.err
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas       665 Nov 26 03:55 NLAODm9xih8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdbLKDmxV8CMn.diag
[2025-11-26 03:55:42] -rw-r--r--. 1 boincer umatlas     21777 Nov 26 03:55 stderr.txt
[2025-11-26 03:55:42] HITS file was successfully produced:
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas 917966484 Nov 26 03:49 shared/HITS.pool.root.1
[2025-11-26 03:55:42]  *** Contents of shared directory: ***
[2025-11-26 03:55:42] total 1306776
[2025-11-26 03:55:42] -rw-r--r--. 2 boincer umatlas 408430661 Nov 25 08:36 ATLAS.root_0
[2025-11-26 03:55:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 08:36 start_atlas.sh
[2025-11-26 03:55:42] -rw-r--r--. 2 boincer umatlas    590111 Nov 25 08:36 input.tar.gz
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas 917966484 Nov 26 03:49 HITS.pool.root.1
[2025-11-26 03:55:42] -rw-------. 1 boincer umatlas  11120640 Nov 26 03:55 result.tar.gz
03:56:04 (3051506): run_atlas exited; CPU time 204857.028659
03:56:04 (3051506): called boinc_finish(0)

</stderr_txt>
]]>

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